Wall clock time and date at job start Sat Apr 11 2020 02:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35626 * 124.93377 * 2 1 4 4 C 1.35426 * 107.15244 * 180.02562 * 3 2 1 5 5 Br 1.89100 * 127.23678 * 179.97438 * 4 3 2 6 6 C 1.41573 * 105.52261 * 0.22363 * 4 3 2 7 7 C 1.47550 * 126.47056 * 179.77106 * 6 4 3 8 8 O 1.21500 * 119.99502 * 0.02562 * 7 6 4 9 9 O 1.34731 * 120.00336 * 180.02562 * 7 6 4 10 10 C 1.45199 * 117.00155 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47410 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46998 * 300.00219 * 11 10 9 13 13 C 1.52998 * 109.46756 * 59.99866 * 11 10 9 14 14 C 1.50694 * 109.47243 * 179.97438 * 11 10 9 15 15 H 1.07998 * 119.99982 * 0.02562 * 14 11 10 16 16 C 1.37877 * 120.00005 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00175 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 120.00035 * 180.02562 * 16 14 11 19 19 H 1.48509 * 109.47327 * 90.00177 * 18 16 14 20 20 H 1.48501 * 109.47473 * 209.99686 * 18 16 14 21 21 H 1.48505 * 109.47201 * 329.99995 * 18 16 14 22 22 N 1.28476 * 124.92726 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.46780 * 89.99787 * 1 2 3 24 24 H 1.08996 * 109.46904 * 210.00017 * 1 2 3 25 25 H 1.08996 * 109.46657 * 329.99978 * 1 2 3 26 26 H 1.08001 * 126.42002 * 0.05883 * 3 2 1 27 27 H 1.09004 * 109.46885 * 300.00088 * 10 9 7 28 28 H 1.08998 * 109.47097 * 59.99522 * 10 9 7 29 29 H 1.09001 * 109.47413 * 59.99715 * 12 11 10 30 30 H 1.08995 * 109.47137 * 179.97438 * 12 11 10 31 31 H 1.09000 * 109.47176 * 299.99893 * 12 11 10 32 32 H 1.09005 * 109.47300 * 60.00735 * 13 11 10 33 33 H 1.09009 * 109.46819 * 180.02562 * 13 11 10 34 34 H 1.09001 * 109.47669 * 300.00297 * 13 11 10 35 35 H 0.97001 * 120.00545 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2417 1.1119 0.0000 4 6 3.5313 0.6983 -0.0006 5 35 5.0806 1.7825 -0.0015 6 6 3.4755 -0.7163 -0.0062 7 6 4.6265 -1.6394 -0.0137 8 8 5.7587 -1.1985 -0.0150 9 8 4.4221 -2.9711 -0.0191 10 6 5.6008 -3.8190 -0.0257 11 6 5.1726 -5.2878 -0.0318 12 6 4.3401 -5.5815 1.2179 13 6 4.3347 -5.5695 -1.2805 14 6 6.3960 -6.1677 -0.0393 15 1 7.3805 -5.7237 -0.0393 16 6 6.2584 -7.5396 -0.0451 17 7 5.0596 -8.0803 -0.0446 18 14 7.7749 -8.6303 -0.0537 19 1 8.1801 -8.9257 1.3441 20 1 7.4671 -9.9005 -0.7586 21 1 8.8830 -7.9318 -0.7533 22 7 2.2006 -1.0533 -0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3632 0.8900 0.5138 26 1 1.8964 2.1352 0.0009 27 1 6.1937 -3.6100 -0.9163 28 1 6.1980 -3.6179 0.8637 29 1 3.4552 -4.9450 1.2229 30 1 4.0347 -6.6277 1.2133 31 1 4.9370 -5.3807 2.1075 32 1 4.9278 -5.3603 -2.1709 33 1 4.0292 -6.6159 -1.2847 34 1 3.4498 -4.9330 -1.2756 35 1 4.9628 -9.0454 -0.0484 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816021228.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:28:44 Heat of formation + Delta-G solvation = -1.589305 kcal Electronic energy + Delta-G solvation = -20304.086757 eV Core-core repulsion = 16964.919343 eV Total energy + Delta-G solvation = -3339.167413 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 330.037 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.88924 -39.57586 -36.48461 -34.74855 -33.91931 -32.05971 -31.18170 -29.75716 -27.98655 -25.68541 -25.53394 -25.06292 -23.15228 -21.57309 -20.26652 -18.75538 -17.90475 -16.79596 -16.67645 -15.74601 -15.64020 -15.51035 -14.66394 -14.11462 -13.91573 -13.45186 -13.09176 -12.97368 -12.74756 -12.72125 -11.76287 -11.40296 -11.37967 -11.27653 -11.13437 -10.91209 -10.65941 -10.57459 -10.33604 -10.12092 -9.80896 -9.79707 -9.54894 -9.32412 -9.24397 -8.95964 -8.68706 -8.31956 -5.96303 -4.07695 1.37042 1.42468 1.57235 2.28438 3.19243 3.31850 3.32545 3.38503 3.43211 4.14088 4.35096 4.43422 4.69737 4.82009 5.00721 5.03555 5.28103 5.29982 5.79067 6.15057 6.18501 6.33122 6.54765 6.80874 7.06597 7.08266 7.24298 7.24800 7.46666 7.54523 7.69950 7.75751 8.12064 8.22057 8.31793 8.45853 8.92249 9.57404 11.04874 Molecular weight = 330.04amu Principal moments of inertia in cm(-1) A = 0.020653 B = 0.003374 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.413272 B = 8297.740771 C = 9456.793561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.282 5.282 3 C 0.018 3.982 4 C -0.159 4.159 5 Br 0.013 6.987 6 C 0.033 3.967 7 C 0.537 3.463 8 O -0.490 6.490 9 O -0.331 6.331 10 C 0.084 3.916 11 C 0.071 3.929 12 C -0.129 4.129 13 C -0.129 4.129 14 C -0.510 4.510 15 H 0.057 0.943 16 C 0.068 3.932 17 N -0.882 5.882 18 Si 0.895 3.105 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 N -0.216 5.216 23 H 0.090 0.910 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.194 0.806 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.018 0.982 30 H 0.083 0.917 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.083 0.917 34 H 0.018 0.982 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.465 21.727 0.151 24.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.071 5.071 3 C -0.127 4.127 4 C -0.248 4.248 5 Br 0.097 6.903 6 C -0.127 4.127 7 C 0.378 3.622 8 O -0.377 6.377 9 O -0.246 6.246 10 C 0.011 3.989 11 C 0.070 3.930 12 C -0.187 4.187 13 C -0.187 4.187 14 C -0.549 4.549 15 H 0.075 0.925 16 C -0.133 4.133 17 N -0.520 5.520 18 Si 0.723 3.277 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 N -0.053 5.053 23 H 0.108 0.892 24 H 0.122 0.878 25 H 0.117 0.883 26 H 0.211 0.789 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.037 0.963 30 H 0.102 0.898 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.102 0.898 34 H 0.037 0.963 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.471 21.065 0.148 23.524 hybrid contribution 1.016 -0.081 -0.007 1.019 sum -9.455 20.984 0.142 23.016 Atomic orbital electron populations 1.22295 0.72106 1.05965 1.04999 1.45720 1.08274 1.02818 1.50255 1.22804 0.89052 0.94323 1.06561 1.21948 0.93667 0.93314 1.15917 1.96689 1.32171 1.63615 1.97849 1.20878 0.90484 0.90982 1.10363 1.19464 0.86119 0.82603 0.74016 1.90879 1.22754 1.78506 1.45512 1.86657 1.40732 1.15206 1.82006 1.23757 0.83559 0.90769 1.00790 1.18243 0.95336 0.85561 0.93837 1.21761 0.97086 1.03073 0.96757 1.21763 0.97075 1.03061 0.96772 1.20943 0.91625 0.90807 1.51482 0.92459 1.24850 0.95946 0.97797 0.94747 1.69837 1.21096 1.10943 1.50167 0.86549 0.83147 0.79924 0.78107 1.20673 1.21206 1.19885 1.73925 1.02260 1.12804 1.16273 0.89159 0.87841 0.88272 0.78944 0.92302 0.92302 0.96336 0.89809 0.95881 0.95874 0.89810 0.96339 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.41 11.32 59.85 0.68 1.09 16 2 N -0.28 -2.96 3.72 -67.95 -0.25 -3.21 16 3 C 0.02 0.17 11.48 -16.88 -0.19 -0.02 16 4 C -0.16 -2.18 6.68 -39.31 -0.26 -2.45 16 5 Br 0.01 0.17 32.70 -68.01 -2.22 -2.05 16 6 C 0.03 0.57 7.16 -82.79 -0.59 -0.02 16 7 C 0.54 10.84 7.96 34.53 0.28 11.11 16 8 O -0.49 -10.40 15.39 -19.27 -0.30 -10.69 16 9 O -0.33 -7.29 8.89 -40.58 -0.36 -7.65 16 10 C 0.08 1.95 4.27 37.16 0.16 2.11 16 11 C 0.07 1.79 0.58 -155.66 -0.09 1.70 16 12 C -0.13 -3.23 8.11 37.16 0.30 -2.93 16 13 C -0.13 -3.23 8.11 37.16 0.30 -2.93 16 14 C -0.51 -13.93 8.01 -34.44 -0.28 -14.21 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 16 C 0.07 1.85 5.15 -17.82 -0.09 1.76 16 17 N -0.88 -24.38 9.35 55.43 0.52 -23.86 16 18 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 N -0.22 -3.33 11.99 33.41 0.40 -2.93 16 23 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.10 0.15 8.13 -51.93 -0.42 -0.27 16 26 H 0.19 0.97 8.06 -52.49 -0.42 0.55 16 27 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.02 0.42 7.68 -51.93 -0.40 0.03 16 30 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 31 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 2.25 6.07 -51.92 -0.32 1.93 16 34 H 0.02 0.42 7.68 -51.93 -0.40 0.02 16 35 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 320.30 15.07 4.83 4.83 Total: -1.00 -32.25 320.30 -6.55 -38.81 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: -4.35 Total: -4.58 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 0.21 Total: -4.79 kcal Atomic # 7 Polarization: -30.67 SS G_CDS: 0.67 Total: -30.01 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.66 Total: -18.34 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 35 Polarization: 0.17 SS G_CDS: -2.22 Total: -2.05 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.25 -6.55 -38.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816021228.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.218 kcal (2) G-P(sol) polarization free energy of solvation -32.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds