Wall clock time and date at job start Sat Apr 11 2020 02:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42099 * 110.54576 * 2 1 4 4 O 1.42102 * 110.54173 * 223.24571 * 2 1 3 5 5 C 1.76205 * 104.44708 * 111.62192 * 2 1 3 6 6 C 1.33855 * 124.51805 * 89.98708 * 5 2 1 7 7 C 1.37413 * 115.11190 * 179.76108 * 6 5 2 8 8 C 1.36752 * 113.28666 * 0.48883 * 7 6 5 9 9 C 1.46389 * 125.46692 * 179.80064 * 8 7 6 10 10 O 1.21631 * 119.99673 * 359.72222 * 9 8 7 11 11 O 1.34896 * 120.00465 * 179.44722 * 9 8 7 12 12 C 1.45196 * 117.00165 * 175.46582 * 11 9 8 13 13 C 1.50702 * 112.85087 * 54.49417 * 12 11 9 14 14 H 1.07999 * 119.99991 * 244.94754 * 13 12 11 15 15 C 1.37875 * 119.99802 * 64.95844 * 13 12 11 16 16 N 1.31518 * 120.00028 * 354.95379 * 15 13 12 17 17 Si 1.86798 * 120.00155 * 174.95636 * 15 13 12 18 18 H 1.48505 * 109.47104 * 89.99573 * 17 15 13 19 19 H 1.48494 * 109.47540 * 209.99618 * 17 15 13 20 20 H 1.48507 * 109.46823 * 329.99906 * 17 15 13 21 21 C 1.53782 * 113.61398 * 283.19093 * 12 11 9 22 22 C 1.53780 * 87.08332 * 220.02329 * 21 12 11 23 23 C 1.53778 * 87.08113 * 25.42893 * 22 21 12 24 24 S 1.70607 * 124.51837 * 270.02267 * 5 2 1 25 25 H 1.09001 * 109.47159 * 308.37953 * 1 2 3 26 26 H 1.09003 * 109.47130 * 68.37569 * 1 2 3 27 27 H 1.09000 * 109.47585 * 188.37832 * 1 2 3 28 28 H 1.08001 * 122.44770 * 0.03188 * 6 5 2 29 29 H 1.08004 * 123.35905 * 180.31688 * 7 6 5 30 30 H 0.97005 * 120.00063 * 185.00722 * 16 15 13 31 31 H 1.09005 * 113.61001 * 334.56392 * 21 12 11 32 32 H 1.08997 * 113.61429 * 105.46720 * 21 12 11 33 33 H 1.08999 * 113.60820 * 270.88374 * 22 21 12 34 34 H 1.08993 * 113.69747 * 139.98980 * 22 21 12 35 35 H 1.09002 * 113.62059 * 220.02195 * 23 22 21 36 36 H 1.08997 * 113.69220 * 89.13389 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9117 5 6 2.2536 -0.6287 1.5863 6 6 2.4426 -1.9247 1.8628 7 6 2.7859 -2.1992 3.1647 8 6 2.8618 -1.0827 3.9507 9 6 3.2007 -1.0679 5.3747 10 8 3.4385 -2.1105 5.9541 11 8 3.2547 0.1026 6.0431 12 6 3.4970 0.0346 7.4731 13 6 4.7407 -0.7427 7.8196 14 1 4.6632 -1.6673 8.3723 15 6 5.9776 -0.2732 7.4313 16 7 6.0661 0.7986 6.6744 17 14 7.5275 -1.1596 7.9802 18 1 7.8839 -2.1986 6.9808 19 1 8.6405 -0.1837 8.0981 20 1 7.2902 -1.8014 9.2983 21 6 2.2611 -0.3816 8.2882 22 6 2.6908 0.6671 9.3276 23 6 3.4058 1.3978 8.1789 24 16 2.4943 0.3330 2.9747 25 1 -0.3633 0.6380 0.8056 26 1 -0.3633 0.3787 -0.9554 27 1 -0.3634 -1.0167 0.1497 28 1 2.3374 -2.6979 1.1160 29 1 2.9741 -3.1975 3.5314 30 1 6.9303 1.0870 6.3412 31 1 1.3159 -0.1484 7.7978 32 1 2.3063 -1.4063 8.6571 33 1 3.3693 0.2771 10.0863 34 1 1.8592 1.2293 9.7522 35 1 4.3751 1.8098 8.4597 36 1 2.7748 2.1179 7.6579 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817736183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:28:51 Heat of formation + Delta-G solvation = -90.837427 kcal Electronic energy + Delta-G solvation = -23779.640816 eV Core-core repulsion = 20063.534825 eV Total energy + Delta-G solvation = -3716.105990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.047 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -39.42826 -38.01097 -37.22653 -36.76781 -36.11304 -34.29397 -32.35255 -30.31218 -29.67283 -26.41250 -25.42771 -24.64966 -23.21993 -21.39434 -20.25777 -18.70727 -18.64343 -18.28017 -16.97933 -16.42449 -16.15627 -15.74500 -15.40558 -15.18675 -14.95349 -14.46705 -13.97427 -13.89998 -13.55868 -13.49029 -13.13467 -13.02777 -12.50526 -12.29500 -12.21473 -12.14173 -11.69882 -11.55859 -11.31194 -11.17371 -11.08677 -10.93899 -10.82870 -10.54113 -10.33451 -10.08643 -9.90547 -9.60388 -9.15710 -8.92635 -8.66220 -8.60886 -8.54858 -6.17682 -4.27922 -0.19708 0.26181 1.45870 1.86077 2.26884 2.67126 3.23883 3.31371 3.34648 3.62021 3.67126 3.79329 4.00255 4.31629 4.47037 4.72245 5.10638 5.19176 5.31614 5.33681 5.50024 5.66502 5.73714 5.75677 5.89550 6.15735 6.26331 6.33974 6.42896 6.54538 6.78535 7.02036 7.22640 7.44466 7.61876 7.79457 8.21058 8.73373 8.95367 9.40304 10.86933 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.018660 B = 0.003709 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.183950 B = 7546.605394 C = 8035.572910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 2.529 3.471 3 O -0.932 6.932 4 O -0.933 6.933 5 C -0.833 4.833 6 C -0.013 4.013 7 C -0.108 4.108 8 C -0.180 4.180 9 C 0.524 3.476 10 O -0.475 6.475 11 O -0.344 6.344 12 C 0.237 3.763 13 C -0.508 4.508 14 H 0.070 0.930 15 C 0.075 3.925 16 N -0.864 5.864 17 Si 0.895 3.105 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.270 1.270 21 C -0.162 4.162 22 C -0.129 4.129 23 C -0.106 4.106 24 S 0.363 5.637 25 H 0.134 0.866 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.156 0.844 29 H 0.160 0.840 30 H 0.265 0.735 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.746 -0.340 -10.146 16.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.799 4.799 2 S 2.705 3.295 3 O -0.929 6.929 4 O -0.930 6.930 5 C -1.036 5.036 6 C -0.050 4.050 7 C -0.140 4.140 8 C -0.302 4.302 9 C 0.365 3.635 10 O -0.364 6.364 11 O -0.260 6.260 12 C 0.204 3.796 13 C -0.545 4.545 14 H 0.088 0.912 15 C -0.131 4.131 16 N -0.501 5.501 17 Si 0.722 3.278 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.195 1.195 21 C -0.200 4.200 22 C -0.167 4.167 23 C -0.143 4.143 24 S 0.635 5.365 25 H 0.153 0.847 26 H 0.151 0.849 27 H 0.152 0.848 28 H 0.173 0.827 29 H 0.178 0.822 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.033 1.422 -10.264 15.880 hybrid contribution 0.652 -2.493 0.563 2.638 sum -11.381 -1.071 -9.701 14.993 Atomic orbital electron populations 1.30229 1.25483 1.12311 1.11899 1.04491 0.77743 0.74385 0.72859 1.93613 1.77446 1.36172 1.85662 1.93575 1.77516 1.61865 1.60048 1.35038 1.29952 1.09392 1.29212 1.19647 0.94722 0.94054 0.96566 1.20909 1.01126 0.99785 0.92157 1.25102 1.08467 0.98698 0.97976 1.19246 0.75588 0.84159 0.84553 1.90819 1.43288 1.33812 1.68481 1.86565 1.80026 1.31343 1.28084 1.21363 0.92167 0.94397 0.71671 1.20920 0.88777 1.07797 1.36979 0.91237 1.25061 0.99301 0.94324 0.94452 1.70006 1.25362 1.22793 1.31895 0.86532 0.82325 0.79463 0.79512 1.20465 1.20965 1.19466 1.23576 0.98423 0.99256 0.98707 1.22501 0.99386 0.98222 0.96575 1.22897 1.00333 0.96366 0.94740 1.83306 1.56957 1.04359 0.91899 0.84748 0.84927 0.84771 0.82676 0.82213 0.92545 0.92009 0.91874 0.90104 0.92814 0.90356 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.44 10.80 101.05 1.09 -2.35 16 2 S 2.53 26.13 5.92 -107.50 -0.64 25.50 16 3 O -0.93 -12.73 17.68 -57.54 -1.02 -13.74 16 4 O -0.93 -12.07 17.58 -57.54 -1.01 -13.08 16 5 C -0.83 -10.68 6.01 29.19 0.18 -10.51 16 6 C -0.01 -0.16 9.71 -41.42 -0.40 -0.57 16 7 C -0.11 -1.67 10.01 -40.42 -0.40 -2.08 16 8 C -0.18 -3.35 6.45 -36.84 -0.24 -3.59 16 9 C 0.52 12.12 7.58 34.01 0.26 12.38 16 10 O -0.48 -12.05 15.21 -19.37 -0.29 -12.34 16 11 O -0.34 -8.37 9.78 -41.03 -0.40 -8.77 16 12 C 0.24 5.78 0.50 -90.96 -0.05 5.74 16 13 C -0.51 -13.68 6.29 -34.44 -0.22 -13.90 16 14 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 15 C 0.07 2.02 5.24 -17.82 -0.09 1.93 16 16 N -0.86 -24.04 12.54 55.43 0.69 -23.34 16 17 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 C -0.16 -3.39 7.29 -25.92 -0.19 -3.57 16 22 C -0.13 -2.48 7.81 -25.92 -0.20 -2.68 16 23 C -0.11 -2.33 7.19 -25.92 -0.19 -2.51 16 24 S 0.36 5.62 22.60 -107.50 -2.43 3.19 16 25 H 0.13 0.56 8.14 -51.92 -0.42 0.14 16 26 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.13 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.16 1.50 7.97 -52.49 -0.42 1.08 16 29 H 0.16 2.31 8.06 -52.48 -0.42 1.89 16 30 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.35 8.09 -51.93 -0.42 0.93 16 33 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.87 7.63 -51.93 -0.40 1.47 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 341.93 15.07 5.15 5.15 Total: -1.00 -34.75 341.93 -9.58 -44.33 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -4.16 Total: -1.47 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -0.45 Total: -21.71 kcal Atomic # 7 Polarization: -24.04 SS G_CDS: 0.69 Total: -23.34 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -2.72 Total: -47.94 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 31.76 SS G_CDS: -3.07 Total: 28.69 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.75 -9.58 -44.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817736183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.506 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds