Wall clock time and date at job start Sat Apr 11 2020 02:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21617 * 119.99784 * 0.02562 * 16 15 14 18 18 C 1.47378 * 120.00271 * 180.02562 * 16 15 14 19 19 C 1.36396 * 127.18833 * 359.68295 * 18 16 15 20 20 O 1.33693 * 108.41556 * 179.89240 * 19 18 16 21 21 C 1.34221 * 110.91127 * 0.39419 * 20 19 18 22 22 Br 1.89097 * 125.44844 * 179.77983 * 21 20 19 23 23 C 1.34289 * 109.10456 * 359.76222 * 21 20 19 24 24 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 25 25 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 27 27 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 28 28 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 29 29 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 30 30 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 31 31 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 32 32 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 33 33 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 34 34 H 1.07998 * 125.79317 * 0.04514 * 19 18 16 35 35 H 1.07999 * 127.03113 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 0.9607 1.4202 -4.6925 10 14 2.1263 -0.3163 -6.5109 11 1 1.5331 -1.6590 -6.7353 12 1 1.6240 0.6261 -7.5429 13 1 3.6057 -0.4071 -6.6024 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6274 -1.4462 3.7797 18 6 1.6053 0.3477 4.8663 19 6 0.9064 1.5182 4.9092 20 8 0.7594 1.8756 6.1890 21 6 1.3452 0.9856 7.0053 22 35 1.3906 1.0926 8.8927 23 6 1.8936 0.0069 6.2673 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6054 -1.7199 -1.2950 28 1 3.1263 -0.7995 -1.2055 29 1 1.1488 0.8593 -2.3518 30 1 0.7072 1.9230 -5.4823 31 1 1.6054 -1.7197 1.2953 32 1 3.1263 -0.7993 1.2057 33 1 1.1483 0.8592 2.3518 34 1 0.5329 2.0626 4.0545 35 1 2.4351 -0.8547 6.6289 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753616654.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:27:38 Heat of formation + Delta-G solvation = -33.201092 kcal Electronic energy + Delta-G solvation = -19216.709307 eV Core-core repulsion = 15876.171104 eV Total energy + Delta-G solvation = -3340.538203 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 330.037 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.74883 -40.63257 -38.20998 -35.98865 -34.44345 -34.01082 -33.15658 -31.85640 -29.97383 -27.79011 -27.16059 -25.02052 -23.75260 -22.56944 -21.55720 -20.93222 -19.53566 -18.95391 -17.55267 -17.38259 -17.17105 -16.48267 -16.46715 -15.84531 -15.55460 -15.39248 -15.01604 -14.46240 -14.21292 -14.13131 -13.81668 -13.59292 -13.53221 -12.94725 -12.76766 -12.46943 -12.20971 -12.16851 -11.98042 -11.74233 -11.72070 -11.63822 -11.22159 -11.03544 -10.92098 -10.17740 -9.79830 -8.97736 -7.94463 -5.22275 -0.27164 0.16228 0.62509 1.48707 1.51123 1.57168 1.91507 2.22109 2.27265 2.57834 3.39201 3.41076 3.72323 3.75178 3.98444 4.03498 4.13531 4.22426 4.38266 4.56473 4.67210 4.72576 4.79854 4.93358 4.96773 5.07065 5.15119 5.30087 5.40746 5.50351 5.51839 5.56776 6.28504 6.48083 7.13872 7.35510 8.11044 8.35269 9.28650 Molecular weight = 330.04amu Principal moments of inertia in cm(-1) A = 0.054383 B = 0.001793 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.744921 B =15614.170969 C =15968.207096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 H 0.083 0.917 4 C 0.155 3.845 5 N -0.741 5.741 6 C -0.247 4.247 7 H 0.073 0.927 8 C -0.074 4.074 9 N -0.967 5.967 10 Si 0.972 3.028 11 H -0.279 1.279 12 H -0.294 1.294 13 H -0.279 1.279 14 C 0.139 3.861 15 N -0.705 5.705 16 C 0.587 3.413 17 O -0.582 6.582 18 C -0.259 4.259 19 C 0.079 3.921 20 O -0.161 6.161 21 C -0.042 4.042 22 Br 0.070 6.930 23 C -0.115 4.115 24 H 0.043 0.957 25 H 0.050 0.950 26 H 0.080 0.920 27 H 0.021 0.979 28 H 0.019 0.981 29 H 0.377 0.623 30 H 0.252 0.748 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.415 0.585 34 H 0.266 0.734 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.189 2.827 30.807 31.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 H 0.101 0.899 4 C 0.028 3.972 5 N -0.384 5.384 6 C -0.379 4.379 7 H 0.091 0.909 8 C -0.267 4.267 9 N -0.617 5.617 10 Si 0.801 3.199 11 H -0.205 1.205 12 H -0.221 1.221 13 H -0.205 1.205 14 C 0.014 3.986 15 N -0.357 5.357 16 C 0.376 3.624 17 O -0.463 6.463 18 C -0.264 4.264 19 C 0.007 3.993 20 O -0.056 6.056 21 C -0.168 4.168 22 Br 0.154 6.846 23 C -0.138 4.138 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.099 0.901 27 H 0.039 0.961 28 H 0.037 0.963 29 H 0.210 0.790 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.253 0.747 34 H 0.281 0.719 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.799 2.268 31.573 31.705 hybrid contribution 0.008 0.098 -1.652 1.655 sum -1.791 2.367 29.921 30.068 Atomic orbital electron populations 1.21750 0.93736 1.01994 1.01965 1.21335 0.97252 1.00193 0.92480 0.89911 1.20736 0.96559 0.94187 0.85724 1.42490 1.66698 1.27935 1.01299 1.19585 1.27904 1.05263 0.85150 0.90938 1.25529 1.01765 0.97908 1.01457 1.69788 1.45084 1.17689 1.29182 0.85236 0.77870 0.77154 0.79639 1.20524 1.22055 1.20550 1.21177 0.99768 0.95085 0.82526 1.45659 1.57302 1.28123 1.04603 1.17402 0.78451 0.83850 0.82730 1.90789 1.42214 1.26130 1.87172 1.21379 1.11128 1.00313 0.93620 1.25475 0.94903 0.94021 0.84941 1.83876 1.60596 1.44770 1.16373 1.23797 1.07103 0.94458 0.91486 1.96908 1.97861 1.98457 0.91394 1.22804 1.00858 0.99692 0.90419 0.93832 0.93092 0.90142 0.96122 0.96273 0.78995 0.93963 0.91585 0.91902 0.74738 0.71883 0.81343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 8.94 71.98 0.64 -2.88 16 2 C -0.09 -2.57 2.46 -10.79 -0.03 -2.60 16 3 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 4 C 0.15 5.90 5.65 86.38 0.49 6.39 16 5 N -0.74 -36.38 5.33 -343.46 -1.83 -38.21 16 6 C -0.25 -13.66 9.99 84.03 0.84 -12.82 16 7 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 8 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 9 N -0.97 -57.91 13.06 21.65 0.28 -57.63 16 10 Si 0.97 45.74 29.55 68.60 2.03 47.76 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 14 C 0.14 3.41 5.06 86.38 0.44 3.85 16 15 N -0.70 -13.62 5.27 -466.43 -2.46 -16.08 16 16 C 0.59 14.01 7.81 86.65 0.68 14.69 16 17 O -0.58 -19.26 16.98 -4.08 -0.07 -19.33 16 18 C -0.26 -4.77 6.31 -18.99 -0.12 -4.89 16 19 C 0.08 0.88 11.61 67.39 0.78 1.67 16 20 O -0.16 -2.36 10.52 4.04 0.04 -2.32 16 21 C -0.04 -0.70 7.76 66.92 0.52 -0.18 16 22 Br 0.07 0.92 34.08 -20.37 -0.69 0.23 16 23 C -0.12 -2.17 10.96 23.68 0.26 -1.91 16 24 H 0.04 1.38 7.18 -2.39 -0.02 1.36 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.08 1.42 7.18 -2.39 -0.02 1.41 16 27 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.38 19.30 6.85 -92.71 -0.64 18.67 16 30 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.41 5.00 6.62 -92.71 -0.61 4.39 16 34 H 0.27 0.27 7.47 -2.91 -0.02 0.25 16 35 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -72.02 326.54 2.15 -69.88 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -0.12 Total: 18.13 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 4.97 Total: -2.43 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -4.01 Total: -111.92 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.03 Total: -21.65 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Atomic # 35 Polarization: 0.92 SS G_CDS: -0.69 Total: 0.23 kcal Total: -72.02 2.15 -69.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753616654.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.674 kcal (2) G-P(sol) polarization free energy of solvation -72.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds