Wall clock time and date at job start Sat Apr 11 2020 02:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46894 * 109.47311 * 2 1 4 4 C 1.46898 * 111.00042 * 199.98558 * 3 2 1 5 5 C 1.50703 * 109.47087 * 66.04623 * 4 3 2 6 6 O 1.21291 * 120.00276 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99635 * 180.02562 * 5 4 3 8 8 C 1.37105 * 119.99659 * 179.97438 * 7 5 4 9 9 H 1.08004 * 119.99981 * 0.02562 * 8 7 5 10 10 C 1.38942 * 120.00193 * 179.97438 * 8 7 5 11 11 N 1.31405 * 120.00667 * 180.02562 * 10 8 7 12 12 Si 1.86808 * 119.99996 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47152 * 89.99308 * 12 10 8 14 14 H 1.48496 * 109.47273 * 210.00018 * 12 10 8 15 15 H 1.48506 * 109.46609 * 330.00041 * 12 10 8 16 16 C 1.46898 * 111.00103 * 76.03173 * 3 2 1 17 17 C 1.50700 * 109.47181 * 199.68884 * 16 3 2 18 18 C 1.38264 * 119.97695 * 264.49051 * 17 16 3 19 19 C 1.38210 * 120.03972 * 180.02562 * 18 17 16 20 20 C 1.38348 * 119.99450 * 359.95527 * 19 18 17 21 21 Cl 1.73600 * 120.01711 * 180.29777 * 20 19 18 22 22 C 1.38445 * 119.96712 * 0.02562 * 20 19 18 23 23 Cl 1.73594 * 120.02456 * 180.02562 * 22 20 19 24 24 C 1.38207 * 119.98174 * 84.47152 * 17 16 3 25 25 H 1.09001 * 109.46841 * 54.86873 * 1 2 3 26 26 H 1.09004 * 109.47042 * 174.86994 * 1 2 3 27 27 H 1.08995 * 109.47123 * 294.87171 * 1 2 3 28 28 H 1.08998 * 109.46669 * 239.99763 * 2 1 3 29 29 H 1.09003 * 109.46672 * 120.00629 * 2 1 3 30 30 H 1.08999 * 109.46989 * 186.04747 * 4 3 2 31 31 H 1.08999 * 109.47052 * 306.04564 * 4 3 2 32 32 H 0.96996 * 120.00402 * 0.02562 * 7 5 4 33 33 H 0.96997 * 120.00886 * 180.02562 * 11 10 8 34 34 H 1.08999 * 109.47098 * 79.68665 * 16 3 2 35 35 H 1.09001 * 109.46872 * 319.68537 * 16 3 2 36 36 H 1.07993 * 119.98513 * 0.02562 * 18 17 16 37 37 H 1.07996 * 120.00354 * 180.02562 * 19 18 17 38 38 H 1.07996 * 119.99708 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4104 1.4516 -0.4687 5 6 3.4711 1.0498 -1.9199 6 8 2.4558 0.7390 -2.5062 7 7 4.6537 1.0359 -2.5663 8 6 4.7091 0.6699 -3.8864 9 1 3.8050 0.3932 -4.4085 10 6 5.9281 0.6561 -4.5530 11 7 5.9812 0.3058 -5.8184 12 14 7.4918 1.1354 -3.6504 13 1 8.0972 -0.0721 -3.0336 14 1 8.4528 1.7361 -4.6098 15 1 7.1680 2.1234 -2.5899 16 6 1.8832 1.9916 1.3308 17 6 1.9239 3.4928 1.2052 18 6 3.1149 4.1697 1.3927 19 6 3.1536 5.5465 1.2782 20 6 2.0004 6.2480 0.9750 21 17 2.0500 7.9767 0.8235 22 6 0.8080 5.5703 0.7868 23 17 -0.6398 6.4490 0.4056 24 6 0.7710 4.1921 0.9021 25 1 -0.3633 0.5914 -0.8405 26 1 -0.3633 -1.0236 -0.0919 27 1 -0.3633 0.4322 0.9323 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5140 0.8900 30 1 3.7827 2.4700 -0.3577 31 1 4.0259 0.7733 0.1222 32 1 5.4657 1.2841 -2.0974 33 1 6.8322 0.2957 -6.2837 34 1 2.7021 1.6580 1.9680 35 1 0.9333 1.6896 1.7720 36 1 4.0154 3.6223 1.6287 37 1 4.0843 6.0745 1.4244 38 1 -0.1589 3.6627 0.7559 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066495544.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:36 Heat of formation + Delta-G solvation = -14.583824 kcal Electronic energy + Delta-G solvation = -23322.541619 eV Core-core repulsion = 19637.947572 eV Total energy + Delta-G solvation = -3684.594048 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.064 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.96664 -38.72809 -37.10697 -36.67624 -36.31005 -33.92680 -32.06474 -31.70222 -31.17478 -30.34699 -27.63529 -25.34525 -23.84479 -23.11931 -22.01521 -20.81324 -19.35359 -18.30503 -17.50070 -16.38473 -16.21910 -15.87658 -15.20505 -15.05823 -14.80638 -14.34061 -14.19403 -14.06735 -13.71602 -13.46299 -13.20936 -12.82484 -12.50604 -12.25567 -12.04641 -11.98546 -11.93300 -11.75704 -11.61075 -11.34109 -11.29060 -11.14794 -11.05801 -10.91889 -10.62963 -10.57374 -9.98202 -9.53486 -9.12760 -8.82165 -8.56772 -8.18645 -8.04876 -6.31372 -3.82769 0.73917 0.92629 1.67431 2.04276 3.01317 3.05045 3.13939 3.18820 3.73258 3.99107 4.09632 4.40508 4.47517 4.76778 4.85221 4.87943 5.03509 5.19386 5.21222 5.35024 5.39856 5.45828 5.56303 5.68472 5.71838 5.75261 5.79105 5.83239 5.92230 6.01623 6.19140 6.36940 6.39594 6.51279 7.12376 7.23373 7.57836 8.14086 8.59722 8.95015 9.42067 9.82801 10.81812 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.011459 B = 0.003553 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.894295 B = 7878.041549 C = 9187.139627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.051 3.949 3 N -0.510 5.510 4 C 0.039 3.961 5 C 0.453 3.547 6 O -0.556 6.556 7 N -0.592 5.592 8 C -0.304 4.304 9 H 0.120 0.880 10 C 0.042 3.958 11 N -0.882 5.882 12 Si 0.878 3.122 13 H -0.271 1.271 14 H -0.276 1.276 15 H -0.269 1.269 16 C 0.089 3.911 17 C -0.053 4.053 18 C -0.100 4.100 19 C -0.099 4.099 20 C -0.034 4.034 21 Cl -0.056 7.056 22 C -0.030 4.030 23 Cl -0.053 7.053 24 C -0.074 4.074 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.098 0.902 29 H 0.025 0.975 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.369 0.631 33 H 0.273 0.727 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.136 0.864 37 H 0.141 0.859 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.303 9.174 20.049 22.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.076 4.076 3 N -0.234 5.234 4 C -0.092 4.092 5 C 0.238 3.762 6 O -0.438 6.438 7 N -0.231 5.231 8 C -0.432 4.432 9 H 0.137 0.863 10 C -0.161 4.161 11 N -0.522 5.522 12 Si 0.704 3.296 13 H -0.197 1.197 14 H -0.202 1.202 15 H -0.195 1.195 16 C -0.039 4.039 17 C -0.054 4.054 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.062 4.062 21 Cl -0.027 7.027 22 C -0.057 4.057 23 Cl -0.024 7.024 24 C -0.093 4.093 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.116 0.884 29 H 0.043 0.957 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.202 0.798 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.154 0.846 37 H 0.159 0.841 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.293 9.403 19.061 22.470 hybrid contribution 1.868 0.274 0.956 2.116 sum -5.426 9.678 20.016 22.886 Atomic orbital electron populations 1.21702 0.95106 1.01303 1.01627 1.22200 0.96209 0.87711 1.01505 1.61578 1.19710 1.19561 1.22580 1.21965 0.89486 1.01878 0.95886 1.19598 0.84241 0.84497 0.87844 1.90553 1.33644 1.51578 1.67975 1.42215 1.07145 1.61851 1.11914 1.19420 0.97273 1.42204 0.84348 0.86267 1.25021 0.97814 0.97628 0.95614 1.69612 1.26554 1.47130 1.08865 0.86699 0.83876 0.79094 0.79891 1.19669 1.20165 1.19502 1.21134 1.02456 0.89394 0.90905 1.19869 0.92446 0.96004 0.97096 1.21168 0.98047 0.93392 0.99273 1.20991 0.96818 0.94161 0.99765 1.20759 0.94066 0.85641 1.05693 1.98383 1.98713 1.09359 1.96229 1.20760 0.87510 0.92680 1.04764 1.98386 1.35672 1.75803 1.92548 1.20897 0.99933 0.90550 0.97926 0.91322 0.92699 0.93825 0.88409 0.95717 0.89333 0.93286 0.79815 0.91623 0.93329 0.89196 0.84584 0.84083 0.83880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.96 37.16 0.37 -1.40 16 2 C 0.05 0.73 5.18 -3.82 -0.02 0.71 16 3 N -0.51 -7.43 4.09 -237.52 -0.97 -8.40 16 4 C 0.04 0.62 5.27 -4.98 -0.03 0.60 16 5 C 0.45 9.97 7.29 -10.98 -0.08 9.89 16 6 O -0.56 -14.38 14.12 5.55 0.08 -14.30 16 7 N -0.59 -13.82 5.09 -10.96 -0.06 -13.87 16 8 C -0.30 -8.49 10.16 -14.93 -0.15 -8.64 16 9 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 10 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 11 N -0.88 -25.63 13.96 55.49 0.77 -24.85 16 12 Si 0.88 19.15 27.74 -169.99 -4.71 14.43 16 13 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 14 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 16 C 0.09 0.95 4.94 -4.98 -0.02 0.92 16 17 C -0.05 -0.58 5.03 -104.62 -0.53 -1.11 16 18 C -0.10 -0.99 8.40 -39.58 -0.33 -1.32 16 19 C -0.10 -1.00 9.83 -39.55 -0.39 -1.38 16 20 C -0.03 -0.39 6.32 -39.46 -0.25 -0.64 16 21 Cl -0.06 -0.61 27.96 -51.86 -1.45 -2.06 16 22 C -0.03 -0.35 6.32 -39.46 -0.25 -0.60 16 23 Cl -0.05 -0.61 27.96 -51.86 -1.45 -2.06 16 24 C -0.07 -0.84 9.51 -39.55 -0.38 -1.22 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.45 6.91 -51.93 -0.36 0.09 16 28 H 0.10 1.77 5.85 -51.93 -0.30 1.47 16 29 H 0.02 0.30 8.00 -51.93 -0.42 -0.11 16 30 H 0.09 1.28 6.32 -51.93 -0.33 0.95 16 31 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 32 H 0.37 7.57 5.76 -40.82 -0.24 7.33 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.05 0.44 7.90 -51.93 -0.41 0.03 16 35 H 0.09 0.84 6.56 -51.93 -0.34 0.50 16 36 H 0.14 1.07 7.98 -52.49 -0.42 0.65 16 37 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 346.88 15.07 5.23 5.23 Total: -1.00 -31.66 346.88 -9.19 -40.86 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -4.48 Total: 8.18 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -2.15 Total: -3.14 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.25 Total: -47.13 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.08 Total: -14.30 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.43 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -2.90 Total: -4.12 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.66 -9.19 -40.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066495544.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.273 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds