Wall clock time and date at job start Sat Apr 11 2020 02:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47267 * 2 1 4 4 C 1.36933 * 120.00183 * 280.10283 * 3 2 1 5 5 H 1.07996 * 120.00374 * 146.38915 * 4 3 2 6 6 C 1.38816 * 119.99715 * 326.39977 * 4 3 2 7 7 N 1.31622 * 120.00111 * 156.17954 * 6 4 3 8 8 Si 1.86800 * 119.99889 * 336.16926 * 6 4 3 9 9 H 1.48503 * 109.46678 * 95.33141 * 8 6 4 10 10 H 1.48494 * 109.47186 * 215.32871 * 8 6 4 11 11 H 1.48500 * 109.47446 * 335.33302 * 8 6 4 12 12 S 1.65607 * 120.00046 * 100.09940 * 3 2 1 13 13 O 1.42097 * 106.40012 * 336.46164 * 12 3 2 14 14 O 1.42095 * 106.40120 * 203.54281 * 12 3 2 15 15 C 1.76196 * 107.21604 * 90.00065 * 12 3 2 16 16 C 1.38167 * 120.02571 * 114.99950 * 15 12 3 17 17 C 1.38243 * 120.05688 * 180.23115 * 16 15 12 18 18 C 1.38294 * 120.11085 * 359.49168 * 17 16 15 19 19 N 1.48002 * 119.97293 * 180.23415 * 18 17 16 20 20 O 1.21801 * 119.99573 * 180.27734 * 19 18 17 21 21 O 1.21788 * 120.00143 * 0.27242 * 19 18 17 22 22 C 1.38130 * 120.05136 * 0.50728 * 18 17 16 23 23 C 1.38709 * 120.02905 * 294.97953 * 15 12 3 24 24 O 1.35900 * 120.05728 * 359.97438 * 23 15 12 25 25 C 1.42897 * 117.00124 * 180.02562 * 24 23 15 26 26 H 1.09001 * 109.47363 * 65.05086 * 1 2 3 27 27 H 1.09000 * 109.47354 * 185.04885 * 1 2 3 28 28 H 1.09000 * 109.47732 * 305.04768 * 1 2 3 29 29 H 1.08999 * 109.47465 * 239.99670 * 2 1 3 30 30 H 1.09002 * 109.46690 * 119.99500 * 2 1 3 31 31 H 0.97000 * 119.99521 * 179.97438 * 7 6 4 32 32 H 1.08006 * 119.97536 * 359.95605 * 16 15 12 33 33 H 1.07999 * 119.94904 * 179.72595 * 17 16 15 34 34 H 1.07997 * 120.02456 * 179.76676 * 22 18 17 35 35 H 1.09004 * 109.47308 * 299.99927 * 25 24 23 36 36 H 1.09006 * 109.47115 * 59.99731 * 25 24 23 37 37 H 1.08999 * 109.47119 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0504 2.0961 -1.1675 5 1 1.8719 3.1611 -1.1537 6 6 2.3124 1.4518 -2.3688 7 7 1.9007 1.9796 -3.5021 8 14 3.2493 -0.1642 -2.3770 9 1 2.2864 -1.2945 -2.3969 10 1 4.1137 -0.2291 -3.5828 11 1 4.0926 -0.2537 -1.1580 12 16 2.5315 2.0781 1.4120 13 8 1.8930 1.3686 2.4647 14 8 2.4079 3.4824 1.2344 15 6 4.2552 1.7452 1.5615 16 6 5.1657 2.7837 1.5244 17 6 6.5186 2.5228 1.6368 18 6 6.9636 1.2233 1.7972 19 7 8.4124 0.9480 1.9224 20 8 8.8051 -0.1969 2.0586 21 8 9.2118 1.8661 1.8893 22 6 6.0573 0.1815 1.8349 23 6 4.6993 0.4403 1.7169 24 8 3.8057 -0.5829 1.7546 25 6 4.3344 -1.9004 1.9175 26 1 -0.3634 0.4335 -0.9318 27 1 -0.3634 -1.0237 0.0904 28 1 -0.3634 0.5901 0.8413 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 2.0841 1.5295 -4.3416 32 1 4.8205 3.7999 1.4030 33 1 7.2291 3.3356 1.6032 34 1 6.4056 -0.8335 1.9563 35 1 5.0052 -2.1278 1.0889 36 1 4.8848 -1.9574 2.8567 37 1 3.5167 -2.6209 1.9317 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067717282.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:41 Heat of formation + Delta-G solvation = -64.051001 kcal Electronic energy + Delta-G solvation = -27760.215798 eV Core-core repulsion = 23634.811234 eV Total energy + Delta-G solvation = -4125.404564 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.081 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.22807 -40.29152 -37.71738 -36.60842 -36.54117 -35.96607 -34.63234 -32.63168 -32.09196 -30.54979 -29.70789 -27.85104 -26.45781 -24.83374 -22.71780 -22.64094 -22.50364 -19.72632 -18.79362 -18.70610 -17.81102 -17.59403 -17.06847 -16.97911 -16.49927 -16.21144 -16.00102 -15.70612 -14.61077 -14.33737 -14.02133 -13.63448 -13.46534 -13.24984 -13.13659 -12.92658 -12.63110 -12.07589 -11.98128 -11.69542 -11.59980 -11.48078 -11.26998 -11.22852 -11.19868 -11.19101 -10.92808 -10.90527 -10.73898 -10.40160 -10.22163 -10.06813 -9.69850 -9.24515 -8.70319 -8.44208 -7.02158 -4.34199 -0.30945 1.03877 1.20772 1.31228 1.46947 2.78437 2.93342 2.95523 2.98278 3.17249 3.71216 3.94241 4.34349 4.41121 4.53431 4.60979 4.72574 4.91044 4.99398 5.15904 5.25525 5.33885 5.43121 5.56337 5.62119 5.69679 5.87469 5.93806 6.04801 6.19618 6.22758 6.40810 6.48166 6.72008 6.92598 6.95613 7.10310 7.61796 7.93294 8.50549 8.62703 10.02468 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.013737 B = 0.005657 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.859910 B = 4948.699410 C = 5169.125662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.112 3.888 3 N -0.807 5.807 4 C -0.228 4.228 5 H 0.132 0.868 6 C 0.065 3.935 7 N -0.803 5.803 8 Si 0.884 3.116 9 H -0.263 1.263 10 H -0.284 1.284 11 H -0.260 1.260 12 S 2.503 3.497 13 O -0.982 6.982 14 O -0.973 6.973 15 C -0.637 4.637 16 C 0.004 3.996 17 C -0.113 4.113 18 C 0.015 3.985 19 N 0.029 4.971 20 O -0.167 6.167 21 O -0.156 6.156 22 C -0.175 4.175 23 C 0.214 3.786 24 O -0.292 6.292 25 C 0.017 3.983 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.287 0.713 32 H 0.167 0.833 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.972 -6.567 4.939 9.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.013 4.013 3 N -0.630 5.630 4 C -0.381 4.381 5 H 0.149 0.851 6 C -0.154 4.154 7 N -0.438 5.438 8 Si 0.711 3.289 9 H -0.190 1.190 10 H -0.211 1.211 11 H -0.184 1.184 12 S 2.603 3.397 13 O -0.971 6.971 14 O -0.963 6.963 15 C -0.711 4.711 16 C -0.016 4.016 17 C -0.133 4.133 18 C -0.068 4.068 19 N 0.548 4.452 20 O -0.381 6.381 21 O -0.373 6.373 22 C -0.195 4.195 23 C 0.166 3.834 24 O -0.204 6.204 25 C -0.078 4.078 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.185 0.815 33 H 0.174 0.826 34 H 0.174 0.826 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.702 -6.021 5.670 8.701 hybrid contribution 2.137 -1.357 -0.319 2.552 sum 4.840 -7.378 5.350 10.319 Atomic orbital electron populations 1.22009 0.95219 1.00934 1.03234 1.21475 0.95327 0.82970 1.01509 1.54492 1.61603 1.21963 1.24905 1.19658 1.40080 0.96756 0.81574 0.85096 1.25870 0.95146 0.99267 0.95112 1.69823 1.36181 1.39045 0.98759 0.86805 0.80630 0.82754 0.78667 1.18950 1.21131 1.18382 1.13430 0.74223 0.75476 0.76616 1.93377 1.73364 1.73433 1.56934 1.93360 1.85377 1.31399 1.86148 1.32438 1.34473 0.95371 1.08796 1.20915 0.90047 0.99836 0.90794 1.21115 0.97583 0.94447 1.00185 1.20870 0.79287 0.96270 1.10342 1.43675 1.03649 1.00434 0.97449 1.94507 1.83523 1.07186 1.52903 1.94518 1.50943 1.38339 1.53502 1.20977 0.91967 1.00135 1.06421 1.18042 0.86833 0.87759 0.90788 1.86257 1.32818 1.15027 1.86311 1.23280 1.01830 0.81190 1.01505 0.91414 0.92668 0.92107 0.93307 0.89410 0.90234 0.81533 0.82649 0.82623 0.92134 0.91922 0.86998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 10.14 37.15 0.38 -2.29 16 2 C 0.11 2.15 4.91 -4.04 -0.02 2.13 16 3 N -0.81 -17.40 2.56 -59.91 -0.15 -17.56 16 4 C -0.23 -5.33 9.53 -15.06 -0.14 -5.47 16 5 H 0.13 3.30 7.53 -52.49 -0.40 2.91 16 6 C 0.06 1.48 5.32 -17.43 -0.09 1.39 16 7 N -0.80 -19.16 13.97 55.49 0.78 -18.38 16 8 Si 0.88 17.80 24.97 -169.99 -4.24 13.55 16 9 H -0.26 -4.95 6.70 56.52 0.38 -4.57 16 10 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 11 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 12 S 2.50 54.35 5.20 -107.50 -0.56 53.79 16 13 O -0.98 -22.36 16.17 -62.49 -1.01 -23.37 16 14 O -0.97 -23.07 15.86 -57.17 -0.91 -23.98 16 15 C -0.64 -12.22 5.92 -39.43 -0.23 -12.45 16 16 C 0.00 0.06 9.54 -39.61 -0.38 -0.32 16 17 C -0.11 -1.75 9.55 -39.56 -0.38 -2.13 16 18 C 0.02 0.25 6.85 -79.97 -0.55 -0.30 16 19 N 0.03 0.47 4.45 33.95 0.15 0.63 16 20 O -0.17 -2.73 18.45 -29.46 -0.54 -3.27 16 21 O -0.16 -2.55 18.44 -29.46 -0.54 -3.09 16 22 C -0.17 -2.77 8.54 -39.43 -0.34 -3.11 16 23 C 0.21 3.79 6.63 -39.22 -0.26 3.53 16 24 O -0.29 -4.81 6.57 -29.16 -0.19 -5.00 16 25 C 0.02 0.18 9.81 101.05 0.99 1.17 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.93 2.53 -51.93 -0.13 0.80 16 30 H 0.09 1.57 4.94 -51.93 -0.26 1.31 16 31 H 0.29 6.27 8.31 -40.82 -0.34 5.93 16 32 H 0.17 2.59 7.33 -52.48 -0.38 2.21 16 33 H 0.16 1.98 7.61 -52.49 -0.40 1.58 16 34 H 0.16 2.06 5.85 -52.49 -0.31 1.76 16 35 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 36 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 37 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 326.31 15.07 4.92 4.92 Total: -1.00 -28.25 326.31 -6.85 -35.10 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -3.52 Total: 4.51 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -1.02 Total: -17.85 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.77 Total: -35.31 kcal Atomic # 8 Polarization: -55.52 SS G_CDS: -3.20 Total: -58.71 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -4.24 Total: 13.55 kcal Atomic # 16 Polarization: 54.35 SS G_CDS: -0.56 Total: 53.79 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.25 -6.85 -35.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067717282.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.952 kcal (2) G-P(sol) polarization free energy of solvation -28.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds