Wall clock time and date at job start Sat Apr 11 2020 02:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36935 * 120.00146 * 2 1 4 4 H 1.08002 * 119.99607 * 200.27796 * 3 2 1 5 5 C 1.38816 * 120.00096 * 20.27318 * 3 2 1 6 6 N 1.31614 * 119.99598 * 15.02425 * 5 3 2 7 7 Si 1.86795 * 119.99910 * 195.01911 * 5 3 2 8 8 H 1.48497 * 109.46989 * 85.00672 * 7 5 3 9 9 H 1.48508 * 109.46978 * 205.00449 * 7 5 3 10 10 H 1.48498 * 109.47382 * 325.00598 * 7 5 3 11 11 C 1.46504 * 119.99705 * 180.02562 * 2 1 3 12 12 C 1.50704 * 109.46757 * 269.99660 * 11 2 1 13 13 O 1.21275 * 120.00173 * 0.02562 * 12 11 2 14 14 N 1.34779 * 119.99771 * 179.97438 * 12 11 2 15 15 C 1.46498 * 119.99860 * 0.02562 * 14 12 11 16 16 C 1.46496 * 119.99856 * 179.97438 * 14 12 11 17 17 C 1.50698 * 109.46941 * 90.00598 * 16 14 12 18 18 C 1.38264 * 119.98218 * 270.02069 * 17 16 14 19 19 C 1.38203 * 120.04140 * 180.02562 * 18 17 16 20 20 C 1.38347 * 119.99831 * 359.95273 * 19 18 17 21 21 Cl 1.73604 * 120.01765 * 180.29410 * 20 19 18 22 22 C 1.38440 * 119.96140 * 0.02864 * 20 19 18 23 23 Cl 1.73603 * 120.01800 * 180.02562 * 22 20 19 24 24 C 1.38202 * 119.98331 * 89.99559 * 17 16 14 25 25 H 1.08995 * 109.46837 * 275.10063 * 1 2 3 26 26 H 1.08999 * 109.46694 * 35.10033 * 1 2 3 27 27 H 1.08997 * 109.47010 * 155.09808 * 1 2 3 28 28 H 0.96998 * 119.99617 * 179.97438 * 6 5 3 29 29 H 1.09000 * 109.47302 * 149.99833 * 11 2 1 30 30 H 1.09003 * 109.47243 * 29.99682 * 11 2 1 31 31 H 1.09004 * 109.47010 * 269.99420 * 15 14 12 32 32 H 1.09001 * 109.47342 * 29.99494 * 15 14 12 33 33 H 1.09004 * 109.47313 * 149.99306 * 15 14 12 34 34 H 1.09003 * 109.47258 * 330.00698 * 16 14 12 35 35 H 1.09000 * 109.46860 * 210.00111 * 16 14 12 36 36 H 1.07996 * 119.97905 * 0.02562 * 18 17 16 37 37 H 1.08001 * 120.00025 * 180.02562 * 19 18 17 38 38 H 1.08010 * 119.99676 * 0.02875 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1795 1.2148 -0.3242 5 6 1.5202 2.3508 0.4165 6 7 0.3866 2.2844 1.0819 7 14 2.2821 4.0126 0.0329 8 1 1.8689 4.4446 -1.3265 9 1 1.8209 5.0109 1.0310 10 1 3.7620 3.9036 0.0891 11 6 2.1975 -1.2688 -0.0006 12 6 2.4487 -1.7044 1.4201 13 8 2.0543 -1.0224 2.3422 14 7 3.1107 -2.8523 1.6659 15 6 3.5866 -3.6763 0.5521 16 6 3.3554 -3.2755 3.0469 17 6 2.2085 -4.1304 3.5210 18 6 1.1185 -3.5443 4.1375 19 6 0.0663 -4.3272 4.5732 20 6 0.1028 -5.6982 4.3917 21 17 -1.2222 -6.6814 4.9319 22 6 1.1939 -6.2851 3.7740 23 17 1.2409 -8.0053 3.5448 24 6 2.2465 -5.4998 3.3388 25 1 -0.3633 0.0914 1.0236 26 1 -0.3633 0.8408 -0.5909 27 1 -0.3633 -0.9321 -0.4327 28 1 -0.0531 3.0984 1.3733 29 1 3.1499 -1.1383 -0.5144 30 1 1.6083 -2.0282 -0.5147 31 1 2.8144 -4.3943 0.2754 32 1 3.8118 -3.0377 -0.3021 33 1 4.4877 -4.2102 0.8540 34 1 3.4421 -2.3969 3.6862 35 1 4.2802 -3.8506 3.0922 36 1 1.0894 -2.4740 4.2787 37 1 -0.7849 -3.8686 5.0544 38 1 3.0983 -5.9571 2.8571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:53 Heat of formation + Delta-G solvation = -6.548093 kcal Electronic energy + Delta-G solvation = -23547.236925 eV Core-core repulsion = 19862.991333 eV Total energy + Delta-G solvation = -3684.245592 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.064 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.08003 -40.07645 -37.76678 -37.57937 -37.07931 -36.21108 -33.42507 -32.66189 -31.96239 -29.30419 -28.02906 -27.81357 -26.32303 -24.03301 -23.64209 -22.51381 -20.07768 -18.77520 -18.41959 -17.83286 -17.22067 -16.95033 -16.82753 -16.44350 -16.15543 -15.42516 -15.09447 -15.04263 -14.90247 -14.55389 -14.39539 -13.83124 -13.56713 -13.31839 -13.23261 -13.01287 -12.93899 -12.86537 -12.77273 -12.51959 -12.45062 -12.34036 -12.18015 -12.04740 -12.01785 -11.91975 -11.86323 -10.83675 -10.48196 -10.03113 -9.74755 -9.49630 -8.79711 -7.79257 -5.26352 -0.18414 0.02485 0.75658 1.11680 1.46722 1.48624 1.56661 1.97839 2.11262 2.51581 2.61172 3.36124 3.54439 3.68499 3.71528 3.90778 4.05532 4.15432 4.22846 4.47090 4.48107 4.59376 4.64989 4.70279 4.78107 4.79758 4.80589 4.90187 5.01862 5.08134 5.29888 5.39306 5.51783 5.61902 5.74096 5.76791 6.28863 6.60337 7.14238 7.56142 7.87872 8.28238 9.24443 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.020478 B = 0.002956 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.964212 B = 9469.857188 C =10146.740723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.593 5.593 3 C -0.262 4.262 4 H 0.077 0.923 5 C -0.054 4.054 6 N -0.934 5.934 7 Si 0.970 3.030 8 H -0.279 1.279 9 H -0.301 1.301 10 H -0.268 1.268 11 C 0.130 3.870 12 C 0.472 3.528 13 O -0.564 6.564 14 N -0.620 5.620 15 C 0.073 3.927 16 C 0.152 3.848 17 C -0.083 4.083 18 C -0.093 4.093 19 C -0.105 4.105 20 C -0.038 4.038 21 Cl -0.052 7.052 22 C -0.039 4.039 23 Cl -0.045 7.045 24 C -0.075 4.075 25 H -0.007 1.007 26 H 0.022 0.978 27 H 0.032 0.968 28 H 0.244 0.756 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.146 0.854 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.783 -22.666 2.804 23.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.314 5.314 3 C -0.392 4.392 4 H 0.095 0.905 5 C -0.249 4.249 6 N -0.580 5.580 7 Si 0.798 3.202 8 H -0.206 1.206 9 H -0.228 1.228 10 H -0.193 1.193 11 C 0.000 4.000 12 C 0.259 3.741 13 O -0.440 6.440 14 N -0.356 5.356 15 C -0.068 4.068 16 C 0.029 3.971 17 C -0.085 4.085 18 C -0.113 4.113 19 C -0.124 4.124 20 C -0.066 4.066 21 Cl -0.023 7.023 22 C -0.067 4.067 23 Cl -0.015 7.015 24 C -0.094 4.094 25 H 0.011 0.989 26 H 0.041 0.959 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.084 0.916 35 H 0.144 0.856 36 H 0.135 0.865 37 H 0.164 0.836 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 5.353 -22.385 3.326 23.255 hybrid contribution -0.395 1.084 0.497 1.256 sum 4.957 -21.301 3.823 22.202 Atomic orbital electron populations 1.20513 0.82615 0.96070 0.97220 1.44063 1.02148 1.01227 1.83924 1.19535 0.97415 0.85732 1.36547 0.90492 1.25830 0.98648 1.01984 0.98487 1.70325 1.20288 1.26793 1.40544 0.85251 0.78317 0.79556 0.77085 1.20573 1.22785 1.19304 1.21255 0.98747 0.88744 0.91286 1.23334 0.76392 0.79724 0.94649 1.90672 1.50960 1.54754 1.47630 1.48361 1.57644 1.22728 1.06831 1.22064 1.00659 0.95330 0.88789 1.20395 0.95506 0.97478 0.83705 1.20439 0.97014 0.93874 0.97186 1.21300 0.93239 1.00155 0.96567 1.21142 0.99930 0.90878 1.00449 1.20862 0.90879 0.92103 1.02748 1.98378 1.45657 1.69785 1.88430 1.20835 0.95998 0.86523 1.03313 1.98383 1.98365 1.09209 1.95587 1.21113 0.97998 0.91710 0.98600 0.98867 0.95888 0.94916 0.94679 0.88703 0.88573 0.91962 0.90186 0.88239 0.91637 0.85642 0.86507 0.83600 0.81042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.35 9.02 127.77 1.15 10.50 16 2 N -0.59 -30.13 2.42 -731.29 -1.77 -31.90 16 3 C -0.26 -14.63 9.68 84.03 0.81 -13.82 16 4 H 0.08 4.07 7.86 -2.91 -0.02 4.05 16 5 C -0.05 -3.15 5.06 84.86 0.43 -2.72 16 6 N -0.93 -58.29 10.66 21.65 0.23 -58.06 16 7 Si 0.97 46.29 29.58 68.60 2.03 48.32 16 8 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 9 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 C 0.13 4.91 4.74 85.63 0.41 5.32 16 12 C 0.47 18.20 7.74 87.66 0.68 18.88 16 13 O -0.56 -28.52 15.53 -3.02 -0.05 -28.56 16 14 N -0.62 -16.15 2.86 -851.13 -2.43 -18.58 16 15 C 0.07 1.13 10.28 127.77 1.31 2.44 16 16 C 0.15 3.49 5.57 85.63 0.48 3.97 16 17 C -0.08 -1.93 5.46 -19.87 -0.11 -2.04 16 18 C -0.09 -2.63 9.70 22.27 0.22 -2.41 16 19 C -0.11 -2.65 9.83 22.29 0.22 -2.43 16 20 C -0.04 -0.88 6.32 22.34 0.14 -0.74 16 21 Cl -0.05 -1.11 27.96 -2.72 -0.08 -1.19 16 22 C -0.04 -0.81 6.32 22.34 0.14 -0.67 16 23 Cl -0.04 -0.81 27.96 -2.72 -0.08 -0.89 16 24 C -0.08 -1.38 9.48 22.29 0.21 -1.17 16 25 H -0.01 -0.42 7.40 -2.39 -0.02 -0.44 16 26 H 0.02 1.25 7.21 -2.39 -0.02 1.23 16 27 H 0.03 1.40 7.83 -2.39 -0.02 1.38 16 28 H 0.24 14.86 8.31 -92.71 -0.77 14.09 16 29 H 0.10 3.14 7.29 -2.39 -0.02 3.12 16 30 H 0.10 3.01 7.82 -2.39 -0.02 2.99 16 31 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.08 1.20 6.44 -2.39 -0.02 1.18 16 33 H 0.10 0.88 7.89 -2.38 -0.02 0.87 16 34 H 0.07 1.92 7.37 -2.39 -0.02 1.90 16 35 H 0.13 1.76 7.84 -2.39 -0.02 1.74 16 36 H 0.12 4.01 7.57 -2.91 -0.02 3.99 16 37 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 38 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -76.01 352.61 5.03 -70.98 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 1.08 Total: 4.77 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 6.09 Total: 15.11 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -3.97 Total: -108.54 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.05 Total: -28.56 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -0.15 Total: -2.07 kcal Total: -76.01 5.03 -70.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.432 kcal (2) G-P(sol) polarization free energy of solvation -76.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds