Wall clock time and date at job start Sat Apr 11 2020 02:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35900 * 117.00270 * 2 1 4 4 C 1.38752 * 120.05240 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94680 * 179.97438 * 4 3 2 6 6 S 1.76191 * 119.97559 * 180.02562 * 5 4 3 7 7 O 1.42104 * 106.40301 * 203.53813 * 6 5 4 8 8 O 1.42101 * 106.40587 * 336.46178 * 6 5 4 9 9 N 1.65601 * 107.21575 * 90.00217 * 6 5 4 10 10 C 1.46501 * 120.00423 * 64.99894 * 9 6 5 11 11 H 1.09005 * 109.46467 * 335.00183 * 10 9 6 12 12 C 1.52998 * 109.47226 * 94.99470 * 10 9 6 13 13 C 1.50697 * 109.47528 * 215.00023 * 10 9 6 14 14 H 1.08001 * 119.99549 * 0.02562 * 13 10 9 15 15 C 1.37880 * 120.00085 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00124 * 0.02562 * 15 13 10 17 17 Si 1.86804 * 119.99921 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.46960 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47118 * 120.00185 * 17 15 13 20 20 H 1.48503 * 109.46825 * 240.00299 * 17 15 13 21 21 C 1.38294 * 120.05036 * 359.72376 * 5 4 3 22 22 C 1.38244 * 120.11199 * 0.55704 * 21 5 4 23 23 C 1.38171 * 120.05436 * 359.44067 * 22 21 5 24 24 N 1.48003 * 120.02702 * 180.25690 * 23 22 21 25 25 O 1.21803 * 119.99945 * 0.02562 * 24 23 22 26 26 O 1.21799 * 119.99894 * 179.97438 * 24 23 22 27 27 H 1.09000 * 109.47075 * 59.99985 * 1 2 3 28 28 H 1.09000 * 109.47439 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47423 * 300.00114 * 1 2 3 30 30 H 1.08007 * 120.02913 * 359.95388 * 4 3 2 31 31 H 0.97000 * 120.00480 * 244.99661 * 9 6 5 32 32 H 1.09005 * 109.46816 * 60.00926 * 12 10 9 33 33 H 1.09000 * 109.47324 * 179.97438 * 12 10 9 34 34 H 1.09000 * 109.47713 * 300.00661 * 12 10 9 35 35 H 0.96996 * 120.00149 * 179.97438 * 16 15 13 36 36 H 1.08001 * 119.94303 * 180.29349 * 21 5 4 37 37 H 1.08002 * 119.97539 * 179.72689 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9208 3.6048 0.0011 6 16 0.9634 5.0838 0.0024 7 8 1.7942 6.1002 -0.5417 8 8 -0.3041 4.7420 -0.5416 9 7 0.6978 5.4943 1.5846 10 6 1.8239 5.8706 2.4428 11 1 2.7393 5.4201 2.0592 12 6 1.9705 7.3935 2.4532 13 6 1.5723 5.3806 3.8455 14 1 0.6645 4.8423 4.0747 15 6 2.5014 5.6187 4.8360 16 7 3.6071 6.2738 4.5568 17 14 2.1898 5.0106 6.5746 18 1 0.8827 4.3079 6.6264 19 1 3.2717 4.0748 6.9731 20 1 2.1670 6.1666 7.5066 21 6 3.3019 3.6757 0.0068 22 6 4.0560 2.5171 0.0005 23 6 3.4311 1.2848 0.0000 24 7 4.2390 0.0447 -0.0011 25 8 5.4552 0.1102 -0.0011 26 8 3.6876 -1.0413 -0.0011 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.2128 2.3203 0.0002 31 1 -0.2035 5.4856 1.9433 32 1 1.0551 7.8441 2.8367 33 1 2.8081 7.6736 3.0920 34 1 2.1525 7.7480 1.4386 35 1 4.2606 6.4416 5.2536 36 1 3.7922 4.6380 0.0120 37 1 5.1344 2.5751 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177055284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:28:03 Heat of formation + Delta-G solvation = -83.824328 kcal Electronic energy + Delta-G solvation = -26792.635823 eV Core-core repulsion = 22666.373823 eV Total energy + Delta-G solvation = -4126.261999 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.081 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.21132 -40.45270 -38.03017 -37.08929 -36.42992 -35.71560 -35.64676 -32.49739 -32.39080 -30.83960 -28.50557 -27.87135 -26.74110 -25.38320 -22.97024 -22.90148 -21.17706 -19.86718 -19.42561 -18.66409 -18.33926 -17.59448 -17.52025 -16.89692 -16.36544 -16.29579 -16.10682 -15.46291 -14.98196 -14.87112 -14.28393 -13.83833 -13.67394 -13.36995 -12.87331 -12.43225 -12.33144 -12.16739 -11.97940 -11.94453 -11.81636 -11.67743 -11.50377 -11.34726 -11.29758 -11.13792 -11.05099 -10.87357 -10.71037 -10.45763 -10.30516 -10.10214 -9.40318 -8.91896 -8.82543 -8.53196 -6.30163 -4.39537 -0.45994 0.56940 0.75949 1.13024 1.34645 2.61151 2.83048 3.13129 3.22068 3.23392 3.35226 3.88457 4.01166 4.19065 4.20860 4.56836 4.63854 4.74620 4.85372 4.92389 5.02291 5.06078 5.18764 5.24572 5.45319 5.63297 5.99232 6.04360 6.29173 6.61870 6.69020 6.85958 6.89900 7.38204 7.48835 7.57983 7.70024 7.84901 8.06566 8.63591 9.28394 10.75337 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.010483 B = 0.005008 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.366648 B = 5589.808129 C = 6702.738112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.282 6.282 3 C 0.173 3.827 4 C -0.112 4.112 5 C -0.583 4.583 6 S 2.685 3.315 7 O -0.946 6.946 8 O -0.971 6.971 9 N -1.092 6.092 10 C 0.272 3.728 11 H 0.041 0.959 12 C -0.159 4.159 13 C -0.531 4.531 14 H 0.065 0.935 15 C 0.067 3.933 16 N -0.884 5.884 17 Si 0.899 3.101 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.281 1.281 21 C -0.051 4.051 22 C -0.037 4.037 23 C -0.039 4.039 24 N 0.033 4.967 25 O -0.172 6.172 26 O -0.134 6.134 27 H 0.065 0.935 28 H 0.113 0.887 29 H 0.067 0.933 30 H 0.165 0.835 31 H 0.413 0.587 32 H 0.034 0.966 33 H 0.094 0.906 34 H 0.027 0.973 35 H 0.266 0.734 36 H 0.168 0.832 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.431 -7.013 -8.474 11.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.193 6.193 3 C 0.123 3.877 4 C -0.132 4.132 5 C -0.665 4.665 6 S 2.769 3.231 7 O -0.936 6.936 8 O -0.961 6.961 9 N -0.855 5.855 10 C 0.168 3.832 11 H 0.059 0.941 12 C -0.218 4.218 13 C -0.571 4.571 14 H 0.083 0.917 15 C -0.137 4.137 16 N -0.521 5.521 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.207 1.207 21 C -0.070 4.070 22 C -0.056 4.056 23 C -0.123 4.123 24 N 0.552 4.448 25 O -0.383 6.383 26 O -0.356 6.356 27 H 0.084 0.916 28 H 0.132 0.868 29 H 0.085 0.915 30 H 0.183 0.817 31 H 0.248 0.752 32 H 0.053 0.947 33 H 0.112 0.888 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.185 0.815 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.606 -6.133 -9.202 11.980 hybrid contribution -0.066 -1.153 1.586 1.962 sum -4.672 -7.285 -7.617 11.529 Atomic orbital electron populations 1.23397 0.76906 1.05406 1.02436 1.86391 1.22542 1.23889 1.86476 1.18627 0.89532 0.86537 0.92972 1.21020 1.01232 0.89565 1.01403 1.31779 1.08322 1.19951 1.06494 1.02362 0.73225 0.73618 0.73848 1.93613 1.69670 1.53022 1.77293 1.93549 1.39946 1.84710 1.77928 1.55584 1.17899 1.82219 1.29755 1.18644 0.82126 0.92891 0.89553 0.94091 1.22246 1.02611 0.97383 0.99605 1.21284 1.05935 1.36996 0.92862 0.91655 1.24907 0.94874 0.94694 0.99198 1.69859 1.08894 1.39571 1.33785 0.86432 0.78381 0.78688 0.83897 1.19705 1.20840 1.20668 1.20981 0.91382 0.99599 0.95081 1.21095 1.02637 0.88705 0.93196 1.20757 0.88257 0.86032 1.17279 1.43341 1.01183 1.02365 0.97889 1.94536 0.95478 1.93872 1.54376 1.94576 1.74345 1.14654 1.51976 0.91608 0.86846 0.91481 0.81736 0.75195 0.94665 0.88780 0.95413 0.92386 0.81454 0.81453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 101.05 0.99 1.10 16 2 O -0.28 -3.68 8.51 -41.55 -0.35 -4.04 16 3 C 0.17 2.47 6.67 -39.22 -0.26 2.21 16 4 C -0.11 -1.52 8.51 -39.43 -0.34 -1.86 16 5 C -0.58 -8.68 5.82 -39.60 -0.23 -8.91 16 6 S 2.69 43.18 5.65 -107.50 -0.61 42.57 16 7 O -0.95 -17.32 16.55 -57.17 -0.95 -18.26 16 8 O -0.97 -16.10 17.28 -57.17 -0.99 -17.09 16 9 N -1.09 -19.07 5.46 -5.88 -0.03 -19.10 16 10 C 0.27 5.84 2.76 -69.08 -0.19 5.65 16 11 H 0.04 0.91 7.21 -51.93 -0.37 0.54 16 12 C -0.16 -3.47 9.29 37.16 0.35 -3.13 16 13 C -0.53 -12.68 8.76 -34.44 -0.30 -12.98 16 14 H 0.07 1.52 7.81 -52.49 -0.41 1.11 16 15 C 0.07 1.66 5.30 -17.82 -0.09 1.57 16 16 N -0.88 -22.67 11.32 55.43 0.63 -22.04 16 17 Si 0.90 19.54 29.54 -169.99 -5.02 14.52 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 21 C -0.05 -0.73 8.88 -39.56 -0.35 -1.08 16 22 C -0.04 -0.51 9.55 -39.60 -0.38 -0.89 16 23 C -0.04 -0.59 6.87 -79.81 -0.55 -1.14 16 24 N 0.03 0.53 4.45 34.03 0.15 0.69 16 25 O -0.17 -2.82 18.45 -29.46 -0.54 -3.36 16 26 O -0.13 -2.26 17.24 -36.49 -0.63 -2.89 16 27 H 0.07 0.47 7.66 -51.93 -0.40 0.07 16 28 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.52 7.66 -51.93 -0.40 0.12 16 30 H 0.17 1.83 5.86 -52.48 -0.31 1.53 16 31 H 0.41 6.43 8.83 -34.48 -0.30 6.13 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 34 H 0.03 0.56 7.64 -51.93 -0.40 0.17 16 35 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 36 H 0.17 2.23 7.62 -52.49 -0.40 1.83 16 37 H 0.17 1.94 7.61 -52.49 -0.40 1.54 16 LS Contribution 336.55 15.07 5.07 5.07 Total: -1.00 -30.30 336.55 -8.31 -38.60 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -3.68 Total: 4.77 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -1.35 Total: -19.45 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.75 Total: -40.45 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -3.46 Total: -45.64 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Atomic # 16 Polarization: 43.18 SS G_CDS: -0.61 Total: 42.57 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.30 -8.31 -38.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177055284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.220 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds