Wall clock time and date at job start Sat Apr 11 2020 02:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81007 * 1 3 3 C 1.76200 * 99.99697 * 2 1 4 4 N 1.32667 * 119.12236 * 0.02562 * 3 2 1 5 5 C 1.32053 * 120.98317 * 180.02562 * 4 3 2 6 6 C 1.39023 * 119.23176 * 0.02562 * 5 4 3 7 7 Cl 1.73600 * 120.80093 * 179.97438 * 6 5 4 8 8 C 1.39627 * 118.39229 * 359.97438 * 6 5 4 9 9 C 1.48293 * 120.51448 * 180.02562 * 8 6 5 10 10 O 1.21403 * 119.99979 * 359.97438 * 9 8 6 11 11 O 1.34652 * 119.99519 * 180.27788 * 9 8 6 12 12 C 1.45201 * 116.99655 * 179.72688 * 11 9 8 13 13 C 1.53000 * 109.47187 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47179 * 299.99556 * 13 12 11 15 15 C 1.53005 * 109.46897 * 59.99955 * 13 12 11 16 16 C 1.50701 * 109.47088 * 179.97438 * 13 12 11 17 17 H 1.07996 * 120.00388 * 359.97438 * 16 13 12 18 18 C 1.37881 * 119.99873 * 180.02562 * 16 13 12 19 19 N 1.31518 * 119.99803 * 359.97438 * 18 16 13 20 20 Si 1.86790 * 120.00073 * 179.97438 * 18 16 13 21 21 H 1.48510 * 109.47018 * 59.99704 * 20 18 16 22 22 H 1.48500 * 109.47652 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47205 * 299.99803 * 20 18 16 24 24 N 1.32275 * 119.11666 * 180.29806 * 3 2 1 25 25 H 1.08994 * 109.47377 * 59.99564 * 1 2 3 26 26 H 1.09004 * 109.46592 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46954 * 299.99707 * 1 2 3 28 28 H 1.07996 * 120.38755 * 179.97438 * 5 4 3 29 29 H 1.09003 * 109.47240 * 299.99649 * 12 11 9 30 30 H 1.09003 * 109.47484 * 59.99258 * 12 11 9 31 31 H 1.09013 * 109.46945 * 60.00029 * 14 13 12 32 32 H 1.08999 * 109.47400 * 179.97438 * 14 13 12 33 33 H 1.08997 * 109.47343 * 300.00072 * 14 13 12 34 34 H 1.08997 * 109.47610 * 60.00279 * 15 13 12 35 35 H 1.08999 * 109.47064 * 180.02562 * 15 13 12 36 36 H 1.08999 * 109.46949 * 299.99977 * 15 13 12 37 37 H 0.97005 * 119.99843 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.0867 2.5723 0.0005 5 6 1.2736 3.8795 0.0000 6 6 2.5706 4.3799 -0.0016 7 17 2.8633 6.0911 -0.0029 8 6 3.6322 3.4729 -0.0021 9 6 5.0345 3.9550 -0.0032 10 8 5.2667 5.1466 -0.0042 11 8 6.0503 3.0711 -0.0094 12 6 7.3968 3.6144 -0.0163 13 6 8.4095 2.4675 -0.0219 14 6 8.2130 1.6075 1.2281 15 6 8.1998 1.6082 -1.2704 16 6 9.8070 3.0314 -0.0297 17 1 9.9578 4.1008 -0.0310 18 6 10.8931 2.1820 -0.0363 19 7 10.7094 0.8797 -0.0353 20 14 12.6253 2.8808 -0.0467 21 1 12.8297 3.7153 1.1646 22 1 13.6082 1.7678 -0.0521 23 1 12.8151 3.7153 -1.2604 24 7 3.3657 2.1685 -0.0060 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.4287 4.5522 0.0000 29 1 7.5367 4.2274 -0.9066 30 1 7.5463 4.2263 0.8733 31 1 7.2021 1.1996 1.2334 32 1 8.9342 0.7902 1.2239 33 1 8.3624 2.2197 2.1175 34 1 8.3398 2.2208 -2.1610 35 1 8.9209 0.7908 -1.2742 36 1 7.1890 1.2004 -1.2651 37 1 11.4735 0.2821 -0.0403 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184805964.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:28:07 Heat of formation + Delta-G solvation = -34.755946 kcal Electronic energy + Delta-G solvation = -23389.328186 eV Core-core repulsion = 19705.903115 eV Total energy + Delta-G solvation = -3683.425070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.059 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.48890 -39.78809 -37.07766 -36.59528 -34.91578 -34.40860 -32.26592 -31.23969 -29.33478 -26.89358 -25.56901 -25.42946 -25.09606 -24.75543 -21.81328 -19.01632 -18.83805 -18.55294 -17.07854 -16.54858 -16.32062 -15.98419 -15.71681 -15.35607 -15.08197 -14.66302 -14.34742 -13.85124 -13.24818 -13.09397 -13.07317 -12.81271 -12.54921 -11.94239 -11.83801 -11.78523 -11.53499 -11.30591 -11.16972 -10.93975 -10.92700 -10.71971 -10.49836 -10.37483 -10.15229 -10.13378 -9.90074 -9.65224 -9.39998 -9.29713 -8.73875 -8.35011 -8.08773 -5.99523 -4.11661 -0.14003 0.30063 0.78669 1.64402 1.78525 2.35880 2.61895 3.25066 3.30873 3.35426 3.38308 3.55494 3.88997 4.19705 4.29610 4.44945 4.80580 4.84443 5.18420 5.26557 5.37404 5.46434 5.98882 6.06850 6.13362 6.45242 6.68079 6.92367 7.01971 7.18955 7.20848 7.22381 7.42446 7.66120 7.72025 7.97363 8.08678 8.21508 8.40736 8.87790 9.53621 11.01497 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.003340 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.244865 B = 8382.268219 C =10036.127343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 S 0.038 5.962 3 C 0.286 3.714 4 N -0.500 5.500 5 C 0.181 3.819 6 C -0.113 4.113 7 Cl 0.003 6.997 8 C 0.185 3.815 9 C 0.505 3.495 10 O -0.476 6.476 11 O -0.317 6.317 12 C 0.081 3.919 13 C 0.072 3.928 14 C -0.130 4.130 15 C -0.130 4.130 16 C -0.514 4.514 17 H 0.056 0.944 18 C 0.069 3.931 19 N -0.881 5.881 20 Si 0.896 3.104 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 N -0.434 5.434 25 H 0.092 0.908 26 H 0.109 0.891 27 H 0.092 0.908 28 H 0.190 0.810 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.019 0.981 32 H 0.084 0.916 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.084 0.916 36 H 0.019 0.981 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.847 1.604 0.087 22.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 S 0.272 5.728 3 C -0.088 4.088 4 N -0.218 5.218 5 C 0.009 3.991 6 C -0.150 4.150 7 Cl 0.032 6.968 8 C 0.034 3.966 9 C 0.345 3.655 10 O -0.363 6.363 11 O -0.231 6.231 12 C 0.009 3.991 13 C 0.072 3.928 14 C -0.188 4.188 15 C -0.188 4.188 16 C -0.552 4.552 17 H 0.075 0.925 18 C -0.133 4.133 19 N -0.518 5.518 20 Si 0.723 3.277 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.203 1.203 24 N -0.153 5.153 25 H 0.111 0.889 26 H 0.128 0.872 27 H 0.111 0.889 28 H 0.207 0.793 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.103 0.897 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.103 0.897 36 H 0.038 0.962 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.970 -0.111 0.080 21.971 hybrid contribution 0.339 2.723 -0.003 2.744 sum -21.631 2.612 0.076 21.788 Atomic orbital electron populations 1.23664 0.94581 1.06726 1.07295 1.86302 1.06023 0.91189 1.89280 1.25292 0.86474 1.01715 0.95351 1.68791 1.34240 1.03534 1.15249 1.23341 0.94627 0.91520 0.89658 1.22739 0.95742 0.89814 1.06662 1.98447 1.96129 1.06272 1.95926 1.20717 0.92774 0.88490 0.94660 1.20378 0.85264 0.84769 0.75046 1.90911 1.84811 1.16360 1.44192 1.86705 1.16857 1.38564 1.80941 1.23889 0.74994 0.99307 1.00920 1.18246 0.90481 0.90115 0.93979 1.21772 0.99008 1.01356 0.96625 1.21772 0.98994 1.01360 0.96641 1.20887 0.89380 0.92958 1.51993 0.92532 1.24849 0.98946 0.94812 0.94662 1.69830 1.30441 1.01787 1.49768 0.86601 0.83864 0.78535 0.78652 1.20259 1.21208 1.20257 1.68794 1.21005 1.14069 1.11422 0.88929 0.87229 0.88928 0.79306 0.92085 0.92087 0.96183 0.89714 0.95906 0.95909 0.89712 0.96184 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.61 101.05 0.97 0.00 16 2 S 0.04 0.40 22.89 -107.50 -2.46 -2.06 16 3 C 0.29 3.77 7.85 -90.99 -0.71 3.05 16 4 N -0.50 -5.49 9.10 -13.42 -0.12 -5.61 16 5 C 0.18 1.76 11.13 -17.17 -0.19 1.57 16 6 C -0.11 -1.43 6.40 -38.77 -0.25 -1.68 16 7 Cl 0.00 0.04 26.23 -51.86 -1.36 -1.32 16 8 C 0.18 2.94 6.79 -82.65 -0.56 2.38 16 9 C 0.51 9.43 7.96 34.87 0.28 9.71 16 10 O -0.48 -9.14 13.92 -19.19 -0.27 -9.40 16 11 O -0.32 -6.65 8.73 -40.36 -0.35 -7.01 16 12 C 0.08 1.81 4.27 37.16 0.16 1.97 16 13 C 0.07 1.79 0.58 -155.66 -0.09 1.70 16 14 C -0.13 -3.20 8.11 37.16 0.30 -2.90 16 15 C -0.13 -3.21 8.11 37.16 0.30 -2.90 16 16 C -0.51 -13.80 8.01 -34.44 -0.28 -14.07 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.07 1.86 5.15 -17.82 -0.09 1.77 16 19 N -0.88 -24.08 9.35 55.43 0.52 -23.56 16 20 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 N -0.43 -7.00 10.21 -10.02 -0.10 -7.10 16 25 H 0.09 0.57 8.11 -51.92 -0.42 0.15 16 26 H 0.11 0.46 8.14 -51.91 -0.42 0.03 16 27 H 0.09 0.57 8.11 -51.92 -0.42 0.15 16 28 H 0.19 1.04 8.06 -52.49 -0.42 0.61 16 29 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.02 0.46 7.68 -51.92 -0.40 0.06 16 32 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 36 H 0.02 0.46 7.68 -51.93 -0.40 0.06 16 37 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 343.78 15.07 5.18 5.18 Total: -1.00 -29.59 343.78 -8.50 -38.09 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -4.35 Total: -3.67 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -0.16 Total: 0.59 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.29 Total: -36.28 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.62 Total: -16.41 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -2.46 Total: -2.06 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -1.36 Total: -1.32 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.59 -8.50 -38.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184805964.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.331 kcal (2) G-P(sol) polarization free energy of solvation -29.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds