Wall clock time and date at job start Sat Apr 11 2020 02:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99905 * 2 1 4 4 H 1.48500 * 109.47203 * 264.79278 * 3 2 1 5 5 H 1.48500 * 109.46958 * 24.79246 * 3 2 1 6 6 H 1.48502 * 109.47244 * 144.79270 * 3 2 1 7 7 C 1.37875 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00077 * 3.85513 * 7 2 1 9 9 C 1.50702 * 119.99905 * 183.85558 * 7 2 1 10 10 O 1.42904 * 110.90375 * 61.36267 * 9 7 2 11 11 C 1.55141 * 110.98870 * 185.22785 * 9 7 2 12 12 C 1.54318 * 103.17474 * 153.83403 * 11 9 7 13 13 N 1.47440 * 107.23380 * 337.62872 * 12 11 9 14 14 C 1.46900 * 110.99927 * 236.74111 * 13 12 11 15 15 C 1.50695 * 109.47535 * 284.50838 * 14 13 12 16 16 C 1.38166 * 120.02672 * 105.27078 * 15 14 13 17 17 C 1.38341 * 120.08364 * 179.97438 * 16 15 14 18 18 Cl 1.73602 * 119.93631 * 180.02562 * 17 16 15 19 19 C 1.38409 * 120.13064 * 0.02628 * 17 16 15 20 20 C 1.38171 * 120.04574 * 359.97438 * 19 17 16 21 21 Cl 1.73601 * 120.03790 * 180.02562 * 20 19 17 22 22 C 1.38828 * 120.02527 * 284.99803 * 15 14 13 23 23 N 1.39814 * 120.06262 * 0.02562 * 22 15 14 24 24 C 1.47847 * 108.56736 * 359.01093 * 13 12 11 25 25 H 0.96995 * 120.00461 * 0.02562 * 1 2 3 26 26 H 0.96699 * 113.99633 * 62.41066 * 10 9 7 27 27 H 1.08996 * 110.70745 * 35.36189 * 11 9 7 28 28 H 1.09006 * 110.70562 * 272.30203 * 11 9 7 29 29 H 1.09006 * 109.88755 * 97.03110 * 12 11 9 30 30 H 1.08996 * 109.89163 * 218.05621 * 12 11 9 31 31 H 1.09002 * 109.46765 * 44.51465 * 14 13 12 32 32 H 1.09006 * 109.46950 * 164.50723 * 14 13 12 33 33 H 1.08002 * 119.95421 * 359.97438 * 16 15 14 34 34 H 1.07998 * 119.97601 * 179.97438 * 19 17 16 35 35 H 0.97003 * 120.00414 * 6.07918 * 23 22 15 36 36 H 0.97001 * 120.00030 * 186.07025 * 23 22 15 37 37 H 1.09000 * 110.37677 * 142.92478 * 24 13 12 38 38 H 1.09006 * 110.37115 * 265.15885 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6066 1.9829 -1.3943 5 1 1.3958 2.6819 0.5871 6 1 3.4873 1.4745 0.8072 7 6 2.0045 -1.1940 0.0005 8 1 1.4664 -2.1283 -0.0619 9 6 3.5090 -1.1954 0.0883 10 8 3.9491 -0.5953 1.3083 11 6 4.0729 -2.6332 -0.0589 12 6 5.4930 -2.3988 -0.6154 13 7 5.4975 -1.0708 -1.2558 14 6 5.9123 -1.1658 -2.6619 15 6 7.4031 -1.3741 -2.7329 16 6 7.9129 -2.6186 -3.0496 17 6 9.2813 -2.8111 -3.1157 18 17 9.9178 -4.3762 -3.5145 19 6 10.1439 -1.7582 -2.8644 20 6 9.6399 -0.5115 -2.5472 21 17 10.7220 0.8091 -2.2327 22 6 8.2651 -0.3144 -2.4858 23 7 7.7517 0.9472 -2.1702 24 6 4.1435 -0.4882 -1.1410 25 1 -0.4850 0.8400 -0.0004 26 1 3.6600 -1.0634 2.1035 27 1 3.4740 -3.2120 -0.7621 28 1 4.1159 -3.1314 0.9097 29 1 6.2183 -2.4206 0.1980 30 1 5.7355 -3.1677 -1.3489 31 1 5.4048 -2.0069 -3.1343 32 1 5.6490 -0.2444 -3.1814 33 1 7.2423 -3.4422 -3.2458 34 1 11.2117 -1.9114 -2.9163 35 1 6.7979 1.0633 -2.0370 36 1 8.3493 1.7064 -2.0844 37 1 4.2060 0.5864 -0.9696 38 1 3.5638 -0.6952 -2.0407 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602696917.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:27:02 Heat of formation + Delta-G solvation = -24.764367 kcal Electronic energy + Delta-G solvation = -24044.670957 eV Core-core repulsion = 20359.635448 eV Total energy + Delta-G solvation = -3685.035509 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.064 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.08658 -38.53262 -36.83779 -36.50330 -35.05558 -34.38706 -32.42160 -32.01355 -29.76796 -28.59938 -28.35916 -25.84210 -24.02103 -22.61993 -21.79355 -20.33641 -19.70251 -17.53870 -17.36292 -17.23459 -16.32944 -15.63465 -15.26970 -14.79436 -14.67659 -14.55472 -14.29602 -13.97306 -13.72942 -13.15300 -12.91966 -12.67941 -12.49706 -12.38218 -12.11181 -11.92586 -11.63833 -11.54966 -11.37422 -11.31133 -11.07198 -10.94593 -10.57893 -10.49099 -10.31501 -10.22016 -10.00744 -9.05881 -8.92286 -8.73163 -8.39612 -7.90225 -7.58724 -6.23687 -4.35094 0.97903 1.20035 1.81862 2.27865 3.25314 3.36878 3.40938 3.61215 3.76114 4.37397 4.42361 4.56640 4.85987 4.96889 5.07365 5.10974 5.26253 5.30828 5.42728 5.55051 5.64904 5.69676 5.77245 5.84130 5.95997 6.12969 6.20172 6.22925 6.38254 6.43109 6.64188 6.73228 7.06294 7.25485 7.30887 7.45409 7.57147 7.67247 8.19861 8.73642 8.96289 9.40804 10.87011 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.016416 B = 0.003707 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.255776 B = 7551.118816 C = 8727.902422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.087 3.913 3 Si 0.872 3.128 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.223 1.223 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.221 3.779 10 O -0.566 6.566 11 C -0.156 4.156 12 C 0.053 3.947 13 N -0.524 5.524 14 C 0.090 3.910 15 C -0.126 4.126 16 C -0.049 4.049 17 C -0.088 4.088 18 Cl -0.075 7.075 19 C -0.054 4.054 20 C -0.113 4.113 21 Cl -0.069 7.069 22 C 0.264 3.736 23 N -0.854 5.854 24 C 0.049 3.951 25 H 0.266 0.734 26 H 0.361 0.639 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.412 0.588 36 H 0.399 0.601 37 H 0.070 0.930 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.167 -2.480 -6.854 20.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.118 4.118 3 Si 0.700 3.300 4 H -0.212 1.212 5 H -0.227 1.227 6 H -0.146 1.146 7 C -0.589 4.589 8 H 0.094 0.906 9 C 0.181 3.819 10 O -0.372 6.372 11 C -0.195 4.195 12 C -0.075 4.075 13 N -0.248 5.248 14 C -0.039 4.039 15 C -0.132 4.132 16 C -0.069 4.069 17 C -0.117 4.117 18 Cl -0.047 7.047 19 C -0.074 4.074 20 C -0.145 4.145 21 Cl -0.040 7.040 22 C 0.153 3.847 23 N -0.392 5.392 24 C -0.078 4.078 25 H 0.076 0.924 26 H 0.207 0.793 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.243 0.757 36 H 0.228 0.772 37 H 0.088 0.912 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 19.776 -1.638 -7.029 21.052 hybrid contribution -0.531 0.226 -0.055 0.580 sum 19.245 -1.413 -7.084 20.556 Atomic orbital electron populations 1.69932 1.06714 1.27593 1.48319 1.24993 0.94572 0.99719 0.92494 0.87112 0.82050 0.82145 0.78671 1.21197 1.22748 1.14629 1.21284 0.88834 0.94918 1.53913 0.90616 1.20083 0.92638 0.86846 0.82360 1.86519 1.78945 1.56102 1.15641 1.23329 0.95061 1.00209 1.00920 1.22715 0.97843 0.88831 0.98116 1.63666 1.27172 1.21978 1.11980 1.21072 0.89756 1.01685 0.91337 1.19198 0.95357 0.91855 1.06777 1.20801 0.93101 0.96622 0.96374 1.20258 0.93006 0.87012 1.11391 1.98348 1.87049 1.26478 1.92809 1.20540 1.00056 0.89520 0.97322 1.20051 0.88681 0.90323 1.15470 1.98337 1.63739 1.47230 1.94712 1.17281 0.89588 0.86901 0.90917 1.42735 1.12134 1.06712 1.77610 1.23500 0.86234 0.99288 0.98740 0.92408 0.79307 0.91359 0.91758 0.91338 0.93740 0.92985 0.90366 0.84732 0.84417 0.75667 0.77178 0.91177 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.96 55.43 0.77 -25.36 16 2 C 0.09 2.40 5.47 -17.82 -0.10 2.30 16 3 Si 0.87 20.95 23.95 -169.99 -4.07 16.88 16 4 H -0.29 -6.60 7.08 56.52 0.40 -6.20 16 5 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.22 -5.31 5.52 56.52 0.31 -5.00 16 7 C -0.55 -14.50 8.88 -34.44 -0.31 -14.80 16 8 H 0.08 2.17 8.03 -52.49 -0.42 1.75 16 9 C 0.22 4.81 0.69 -89.38 -0.06 4.74 16 10 O -0.57 -12.33 10.52 -35.23 -0.37 -12.70 16 11 C -0.16 -2.88 6.10 -24.91 -0.15 -3.03 16 12 C 0.05 0.85 6.51 -2.84 -0.02 0.84 16 13 N -0.52 -8.70 4.83 -232.38 -1.12 -9.82 16 14 C 0.09 1.23 3.92 -4.98 -0.02 1.21 16 15 C -0.13 -1.60 5.07 -104.43 -0.53 -2.13 16 16 C -0.05 -0.57 9.09 -39.57 -0.36 -0.93 16 17 C -0.09 -0.99 6.32 -39.48 -0.25 -1.24 16 18 Cl -0.08 -0.79 28.95 -51.86 -1.50 -2.29 16 19 C -0.05 -0.60 9.60 -39.54 -0.38 -0.98 16 20 C -0.11 -1.33 6.34 -39.32 -0.25 -1.57 16 21 Cl -0.07 -0.72 27.61 -51.86 -1.43 -2.15 16 22 C 0.26 3.29 6.73 -83.71 -0.56 2.73 16 23 N -0.85 -10.00 8.93 32.44 0.29 -9.71 16 24 C 0.05 0.98 4.59 -2.04 -0.01 0.97 16 25 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.36 6.87 9.11 45.56 0.41 7.28 16 27 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.04 0.64 7.03 -51.93 -0.36 0.28 16 31 H 0.05 0.69 7.59 -51.93 -0.39 0.30 16 32 H 0.08 1.03 7.33 -51.93 -0.38 0.65 16 33 H 0.13 1.43 8.00 -52.49 -0.42 1.01 16 34 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.41 5.15 7.05 -40.82 -0.29 4.87 16 36 H 0.40 4.08 7.53 -40.82 -0.31 3.77 16 37 H 0.07 1.48 4.94 -51.93 -0.26 1.22 16 38 H 0.06 1.21 7.71 -51.93 -0.40 0.81 16 LS Contribution 332.76 15.07 5.01 5.01 Total: -1.00 -28.97 332.76 -9.14 -38.12 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -3.73 Total: 13.94 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -3.00 Total: -11.90 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: -0.06 Total: -44.89 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -0.37 Total: -12.70 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.07 Total: 16.88 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -2.93 Total: -4.45 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.97 -9.14 -38.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602696917.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.351 kcal (2) G-P(sol) polarization free energy of solvation -28.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds