Wall clock time and date at job start Sat Apr 11 2020 02:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36001 * 117.00304 * 2 1 4 4 C 1.38115 * 119.99603 * 359.72876 * 3 2 1 5 5 C 1.39789 * 119.84270 * 179.74847 * 4 3 2 6 6 C 1.47481 * 120.07905 * 180.25098 * 5 4 3 7 7 O 1.21501 * 119.99513 * 0.27044 * 6 5 4 8 8 O 1.34747 * 119.99997 * 180.27363 * 6 5 4 9 9 C 1.39761 * 119.84680 * 0.52480 * 5 4 3 10 10 C 1.37765 * 120.00069 * 359.72444 * 9 5 4 11 11 C 1.38853 * 120.15356 * 0.02904 * 10 9 5 12 12 O 1.35784 * 119.92404 * 179.97438 * 11 10 9 13 13 S 1.52211 * 113.99451 * 270.01802 * 12 11 10 14 14 O 1.42102 * 104.27277 * 191.07131 * 13 12 11 15 15 O 1.42097 * 104.27437 * 318.92677 * 13 12 11 16 16 C 1.81396 * 104.44838 * 75.00047 * 13 12 11 17 17 C 1.53006 * 109.46667 * 179.97438 * 16 13 12 18 18 C 1.50702 * 109.46551 * 179.97438 * 17 16 13 19 19 H 1.07990 * 120.00646 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99630 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99952 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00100 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46821 * 60.00061 * 22 20 18 24 24 H 1.48505 * 109.47161 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46609 * 299.99790 * 22 20 18 26 26 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46938 * 59.99841 * 1 2 3 28 28 H 1.09004 * 109.46926 * 299.99962 * 1 2 3 29 29 H 1.08000 * 120.08142 * 359.97246 * 4 3 2 30 30 H 0.96706 * 116.99799 * 180.02562 * 8 6 5 31 31 H 1.08007 * 119.99891 * 179.70660 * 9 5 4 32 32 H 1.08003 * 119.92461 * 179.97438 * 10 9 5 33 33 H 1.08995 * 109.47251 * 299.99306 * 16 13 12 34 34 H 1.08998 * 109.47288 * 60.00234 * 16 13 12 35 35 H 1.08995 * 109.46970 * 299.99786 * 17 16 13 36 36 H 1.08998 * 109.46824 * 60.00258 * 17 16 13 37 37 H 0.97000 * 120.00136 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2943 2.3701 -0.0057 5 6 1.9323 3.6139 -0.0003 6 6 1.1341 4.8540 -0.0007 7 8 -0.0795 4.7953 -0.0008 8 8 1.7508 6.0521 -0.0012 9 6 3.3284 3.6795 -0.0004 10 6 4.0725 2.5201 0.0000 11 6 3.4388 1.2846 -0.0001 12 8 4.1768 0.1448 -0.0002 13 16 4.5135 -0.3744 -1.3908 14 8 5.0400 -1.6742 -1.1615 15 8 3.3162 -0.1894 -2.1333 16 6 5.8122 0.7421 -1.9885 17 6 6.2413 0.3187 -3.3948 18 6 7.3198 1.2466 -3.8916 19 1 7.6650 2.0569 -3.2668 20 6 7.8658 1.0610 -5.1440 21 7 7.4457 0.0738 -5.9048 22 14 9.2032 2.2107 -5.7597 23 1 10.3716 2.1452 -4.8456 24 1 9.6186 1.8006 -7.1252 25 1 8.6818 3.6007 -5.7980 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 0.2157 2.3151 -0.0105 30 1 1.1855 6.8368 -0.0010 31 1 3.8238 4.6392 -0.0011 32 1 5.1512 2.5723 -0.0004 33 1 5.4297 1.7623 -2.0168 34 1 6.6699 0.6941 -1.3175 35 1 6.6240 -0.7015 -3.3662 36 1 5.3838 0.3664 -4.0660 37 1 7.8296 -0.0566 -6.7860 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737865608.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:27:39 Heat of formation + Delta-G solvation = -204.951497 kcal Electronic energy + Delta-G solvation = -26383.099374 eV Core-core repulsion = 22219.292155 eV Total energy + Delta-G solvation = -4163.807219 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.074 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.54969 -40.42259 -39.12168 -37.39741 -36.72861 -36.45031 -35.61692 -33.96935 -31.47243 -31.07113 -30.66940 -27.74958 -25.74421 -25.23269 -22.91573 -22.36373 -21.55443 -20.53796 -19.00545 -18.33201 -17.96991 -17.51301 -17.22333 -16.54900 -16.49219 -16.06248 -15.77845 -15.66790 -15.18541 -14.69893 -14.54650 -14.44990 -14.06688 -13.52970 -13.24026 -12.99271 -12.95265 -12.55138 -12.22903 -11.96136 -11.94622 -11.83037 -11.71231 -11.65678 -11.52516 -11.42189 -11.09921 -11.06452 -11.00379 -10.46831 -10.43463 -9.77684 -9.50826 -9.21050 -8.63445 -8.52465 -6.14714 -4.20784 -0.12307 0.74574 0.89131 2.07497 2.39537 2.53996 2.88243 3.20866 3.25715 3.30825 3.32241 4.05375 4.18694 4.34779 4.37290 4.52949 4.58046 4.67332 4.68771 4.92730 5.00379 5.14759 5.20459 5.31782 5.40749 5.54471 5.56038 5.64372 5.73736 5.86530 6.06347 6.18019 6.38843 6.93607 7.25163 7.31178 7.48019 7.77402 8.13451 8.81970 9.44074 10.96266 Molecular weight = 330.07amu Principal moments of inertia in cm(-1) A = 0.012248 B = 0.004014 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.599669 B = 6974.692548 C = 8582.842609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.293 6.293 3 C 0.146 3.854 4 C -0.134 4.134 5 C -0.083 4.083 6 C 0.533 3.467 7 O -0.510 6.510 8 O -0.507 6.507 9 C -0.078 4.078 10 C -0.105 4.105 11 C 0.084 3.916 12 O -0.663 6.663 13 S 2.570 3.430 14 O -0.932 6.932 15 O -0.951 6.951 16 C -0.614 4.614 17 C 0.031 3.969 18 C -0.522 4.522 19 H 0.062 0.938 20 C 0.059 3.941 21 N -0.890 5.890 22 Si 0.901 3.099 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.108 0.892 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.157 0.843 30 H 0.417 0.583 31 H 0.158 0.842 32 H 0.162 0.838 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.748 9.175 14.623 21.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.205 6.205 3 C 0.097 3.903 4 C -0.153 4.153 5 C -0.085 4.085 6 C 0.377 3.623 7 O -0.399 6.399 8 O -0.319 6.319 9 C -0.097 4.097 10 C -0.124 4.124 11 C 0.041 3.959 12 O -0.621 6.621 13 S 2.669 3.331 14 O -0.931 6.931 15 O -0.950 6.950 16 C -0.745 4.745 17 C -0.007 4.007 18 C -0.561 4.561 19 H 0.080 0.920 20 C -0.144 4.144 21 N -0.528 5.528 22 Si 0.728 3.272 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.201 1.201 26 H 0.126 0.874 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.175 0.825 30 H 0.277 0.723 31 H 0.175 0.825 32 H 0.180 0.820 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.159 7.821 14.678 21.208 hybrid contribution 0.685 1.463 -0.596 1.722 sum -12.474 9.284 14.082 20.979 Atomic orbital electron populations 1.23255 0.77322 1.04965 1.01812 1.86234 1.22235 1.24718 1.87355 1.18767 0.90426 0.85746 0.95335 1.21196 1.01408 0.89578 1.03098 1.18893 0.93438 0.90179 1.05952 1.20614 0.85796 0.83822 0.72095 1.90908 1.15138 1.87945 1.45921 1.84564 1.45184 1.16531 1.85574 1.21242 0.91842 0.99110 0.97489 1.21337 1.02237 0.89451 0.99405 1.17617 0.86452 0.83209 1.08638 1.85761 1.71961 1.45229 1.59150 1.06311 0.77081 0.76847 0.72831 1.93587 1.81460 1.35721 1.82298 1.93595 1.43845 1.86485 1.71056 1.30768 1.16322 1.14994 1.12454 1.18948 0.98399 0.98389 0.85000 1.20945 1.20263 1.13892 1.01020 0.91990 1.25064 0.97079 0.95583 0.96673 1.69944 1.42498 1.29989 1.10337 0.86520 0.81808 0.80876 0.78012 1.20041 1.21071 1.20064 0.87402 0.91701 0.92188 0.82546 0.72349 0.82485 0.82033 0.85921 0.85460 0.94660 0.94637 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.19 16 2 O -0.29 -4.25 9.71 -41.73 -0.41 -4.66 16 3 C 0.15 2.06 5.92 -39.19 -0.23 1.83 16 4 C -0.13 -1.56 8.58 -39.05 -0.33 -1.90 16 5 C -0.08 -0.89 5.87 -104.98 -0.62 -1.50 16 6 C 0.53 5.28 8.26 34.50 0.29 5.57 16 7 O -0.51 -6.24 17.12 -19.27 -0.33 -6.57 16 8 O -0.51 -3.41 12.67 -40.62 -0.51 -3.92 16 9 C -0.08 -0.77 9.60 -39.19 -0.38 -1.14 16 10 C -0.10 -1.19 8.43 -39.53 -0.33 -1.52 16 11 C 0.08 1.23 4.81 -38.92 -0.19 1.04 16 12 O -0.66 -10.99 9.82 -53.58 -0.53 -11.52 16 13 S 2.57 49.49 5.17 -107.50 -0.56 48.94 16 14 O -0.93 -20.83 18.09 -67.04 -1.21 -22.04 16 15 O -0.95 -19.83 15.81 -68.56 -1.08 -20.91 16 16 C -0.61 -11.63 5.39 37.16 0.20 -11.43 16 17 C 0.03 0.79 4.98 -27.88 -0.14 0.65 16 18 C -0.52 -14.08 9.11 -34.44 -0.31 -14.40 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 22 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.56 7.65 -51.93 -0.40 0.16 16 28 H 0.06 0.42 7.67 -51.93 -0.40 0.02 16 29 H 0.16 1.55 5.87 -52.49 -0.31 1.24 16 30 H 0.42 0.92 9.11 45.56 0.42 1.33 16 31 H 0.16 1.11 7.60 -52.48 -0.40 0.71 16 32 H 0.16 1.44 7.48 -52.48 -0.39 1.05 16 33 H 0.12 2.00 6.59 -51.93 -0.34 1.65 16 34 H 0.13 2.12 8.14 -51.92 -0.42 1.69 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 339.35 15.07 5.11 5.11 Total: -1.00 -37.56 339.35 -8.01 -45.57 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -3.05 Total: -0.32 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -1.15 Total: -20.08 kcal Atomic # 7 Polarization: -26.11 SS G_CDS: 0.74 Total: -25.38 kcal Atomic # 8 Polarization: -65.55 SS G_CDS: -4.07 Total: -69.62 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 49.49 SS G_CDS: -0.56 Total: 48.94 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -37.56 -8.01 -45.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737865608.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.383 kcal (2) G-P(sol) polarization free energy of solvation -37.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds