Wall clock time and date at job start Sat Apr 11 2020 02:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46499 * 109.47658 * 184.99947 * 4 2 1 6 6 C 1.34782 * 120.00273 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99688 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99764 * 179.97438 * 6 5 4 9 9 S 1.81002 * 109.46992 * 179.97438 * 8 6 5 10 10 C 1.76191 * 99.99976 * 180.02562 * 9 8 6 11 11 H 1.08001 * 120.00579 * 359.97438 * 10 9 8 12 12 C 1.38804 * 120.00162 * 180.02562 * 10 9 8 13 13 N 1.31628 * 119.99673 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00286 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46957 * 90.00261 * 14 12 10 16 16 H 1.48495 * 109.47132 * 210.00138 * 14 12 10 17 17 H 1.48504 * 109.46980 * 330.00075 * 14 12 10 18 18 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 19 19 C 1.38997 * 120.00554 * 275.00180 * 18 2 1 20 20 C 1.39303 * 120.08360 * 359.72234 * 19 18 2 21 21 N 1.31932 * 119.92775 * 179.77830 * 20 19 18 22 22 C 1.32235 * 120.10225 * 0.49740 * 21 20 19 23 23 C 1.38340 * 120.17019 * 359.73280 * 22 21 20 24 24 Cl 1.73605 * 119.96407 * 180.02562 * 23 22 21 25 25 N 1.32338 * 120.07478 * 0.02562 * 23 22 21 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 30 30 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 31 31 H 0.97002 * 119.99938 * 0.02562 * 5 4 2 32 32 H 1.09000 * 109.46972 * 300.00080 * 8 6 5 33 33 H 1.09004 * 109.46940 * 59.99787 * 8 6 5 34 34 H 0.96997 * 119.99965 * 179.97438 * 13 12 10 35 35 H 0.97006 * 119.99921 * 94.99902 * 18 2 1 36 36 H 1.08005 * 120.03588 * 0.02562 * 20 19 18 37 37 H 1.08002 * 119.91689 * 179.75798 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 3.5001 -0.8264 -1.1905 6 6 4.1732 -1.4283 -2.1911 7 8 3.5701 -1.8825 -3.1403 8 6 5.6751 -1.5359 -2.1310 9 16 6.2785 -2.3893 -3.6087 10 6 8.0102 -2.3764 -3.2839 11 1 8.3865 -1.9231 -2.3787 12 6 8.8909 -2.9479 -4.1918 13 7 8.4324 -3.5000 -5.2952 14 14 10.7269 -2.9336 -3.8477 15 1 11.0989 -4.1581 -3.0945 16 1 11.4710 -2.8974 -5.1323 17 1 11.0704 -1.7338 -3.0428 18 7 2.0183 -0.6905 1.1962 19 6 2.1511 0.0029 2.3935 20 6 1.8258 1.3559 2.4567 21 7 1.9488 2.0100 3.5958 22 6 2.3896 1.3856 4.6749 23 6 2.7184 0.0431 4.6157 24 17 3.2961 -0.7715 6.0358 25 7 2.5932 -0.6208 3.4778 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.6054 -1.7198 -1.2951 30 1 1.7517 -0.1584 -2.1369 31 1 3.9824 -0.4628 -0.4315 32 1 6.1093 -0.5372 -2.0849 33 1 5.9638 -2.0989 -1.2433 34 1 9.0479 -3.8990 -5.9298 35 1 2.2490 -1.6317 1.1527 36 1 1.4694 1.8680 1.5750 37 1 2.4929 1.9249 5.6049 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097673921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:28:15 Heat of formation + Delta-G solvation = 8.031787 kcal Electronic energy + Delta-G solvation = -22221.209461 eV Core-core repulsion = 18571.932558 eV Total energy + Delta-G solvation = -3649.276904 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.066 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.56160 -39.50558 -37.87469 -37.13023 -34.94879 -33.96133 -32.45773 -32.01948 -29.73945 -29.45968 -26.19096 -25.43853 -25.19655 -24.11278 -21.65987 -20.46042 -18.79806 -18.19657 -17.84179 -17.13463 -16.43229 -16.33646 -16.14174 -15.70994 -15.31559 -14.99727 -14.82808 -14.17290 -13.80450 -13.57806 -13.52009 -13.11920 -13.02638 -12.65219 -12.59422 -12.40401 -12.06370 -11.93362 -11.84659 -11.80135 -11.55655 -11.08518 -11.05254 -10.78693 -10.36171 -9.85216 -9.68657 -9.53296 -9.11813 -9.05534 -8.44228 -8.28607 -6.54045 -6.24656 -3.95633 0.30453 0.74340 1.19961 2.41426 2.93248 2.98455 3.20179 3.20855 3.25767 3.29544 3.61272 3.83350 3.88153 4.07507 4.17679 4.26233 4.46699 4.56439 4.63058 4.81335 5.04640 5.10714 5.14031 5.20536 5.30908 5.45332 5.61970 5.63622 5.70249 5.82541 6.08357 6.11119 6.41791 6.77768 6.95135 7.34986 7.53152 7.57268 8.32404 8.47882 9.20910 10.82788 Molecular weight = 330.07amu Principal moments of inertia in cm(-1) A = 0.012789 B = 0.002441 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.926591 B =11468.484931 C =13162.297008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.136 3.864 3 H 0.094 0.906 4 C 0.114 3.886 5 N -0.741 5.741 6 C 0.533 3.467 7 O -0.515 6.515 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.073 0.927 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.704 5.704 19 C 0.383 3.617 20 C -0.009 4.009 21 N -0.384 5.384 22 C -0.004 4.004 23 C 0.182 3.818 24 Cl -0.015 7.015 25 N -0.501 5.501 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.399 0.601 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.269 0.731 35 H 0.413 0.587 36 H 0.173 0.827 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.537 10.710 19.656 27.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.031 3.969 3 H 0.112 0.888 4 C -0.011 4.011 5 N -0.397 5.397 6 C 0.320 3.680 7 O -0.388 6.388 8 C -0.305 4.305 9 S 0.168 5.832 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.202 1.202 16 H -0.207 1.207 17 H -0.197 1.197 18 N -0.338 5.338 19 C 0.142 3.858 20 C -0.178 4.178 21 N -0.097 5.097 22 C -0.165 4.165 23 C 0.014 3.986 24 Cl 0.013 6.987 25 N -0.227 5.227 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.233 0.767 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.251 0.749 36 H 0.190 0.810 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -17.526 9.893 17.857 26.906 hybrid contribution 2.297 0.065 1.828 2.936 sum -15.229 9.958 19.685 26.806 Atomic orbital electron populations 1.22255 0.93657 1.03668 1.03220 1.21455 0.95115 0.97295 0.83011 0.88833 1.21581 0.81451 1.01617 0.96418 1.45997 1.06592 1.62342 1.24741 1.20327 0.89571 0.76604 0.81527 1.90714 1.69846 1.45840 1.32439 1.23534 0.93387 1.05746 1.07808 1.85376 1.04720 1.73077 1.20062 1.22860 0.91461 1.44395 1.09716 0.90930 1.24995 0.99639 0.94503 0.94424 1.70012 1.35470 1.35431 1.09370 0.86162 0.82767 0.78657 0.77895 1.20237 1.20719 1.19677 1.44783 1.69952 1.13590 1.05426 1.19222 0.90419 0.89686 0.86439 1.23292 1.05530 0.91033 0.97980 1.68364 1.06842 1.36292 0.98218 1.23173 1.03163 0.90929 0.99196 1.22568 0.96203 0.90613 0.89228 1.98440 1.86272 1.80449 1.33546 1.67180 1.18525 1.38852 0.98105 0.91344 0.90361 0.91666 0.90606 0.89421 0.76670 0.89214 0.89225 0.92148 0.74920 0.80968 0.80800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.76 9.43 37.16 0.35 -0.41 16 2 C 0.14 0.77 2.43 -67.94 -0.16 0.60 16 3 H 0.09 0.43 6.46 -51.93 -0.34 0.09 16 4 C 0.11 0.99 5.23 -4.05 -0.02 0.97 16 5 N -0.74 -8.54 5.39 -60.30 -0.32 -8.87 16 6 C 0.53 9.28 7.85 -10.98 -0.09 9.19 16 7 O -0.51 -10.98 15.86 5.56 0.09 -10.89 16 8 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.79 16 10 C -0.54 -15.18 9.50 30.94 0.29 -14.88 16 11 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 12 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 14 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 N -0.70 -4.97 4.68 -53.83 -0.25 -5.22 16 19 C 0.38 3.31 7.65 -154.73 -1.18 2.13 16 20 C -0.01 -0.07 10.03 -17.11 -0.17 -0.24 16 21 N -0.38 -3.47 10.49 -12.85 -0.13 -3.61 16 22 C 0.00 -0.03 10.99 -17.34 -0.19 -0.22 16 23 C 0.18 1.71 7.28 -17.30 -0.13 1.59 16 24 Cl -0.02 -0.13 29.13 -51.86 -1.51 -1.64 16 25 N -0.50 -5.22 10.52 -9.36 -0.10 -5.32 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.29 7.73 -51.93 -0.40 -0.11 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.40 3.88 8.14 -40.82 -0.33 3.55 16 32 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 33 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 34 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.41 3.21 8.73 -40.82 -0.36 2.86 16 36 H 0.17 0.92 6.13 -52.48 -0.32 0.60 16 37 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 352.98 15.07 5.32 5.32 Total: -1.00 -34.79 352.98 -8.84 -43.63 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -4.25 Total: 1.42 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -1.17 Total: -2.08 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.08 Total: -48.29 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.79 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.51 Total: -1.64 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.79 -8.84 -43.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097673921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.663 kcal (2) G-P(sol) polarization free energy of solvation -34.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds