Wall clock time and date at job start Sat Apr 11 2020 02:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76206 * 99.99796 * 2 1 4 4 N 1.32692 * 118.98318 * 359.97438 * 3 2 1 5 5 C 1.32265 * 121.08160 * 180.02562 * 4 3 2 6 6 Cl 1.73599 * 120.47083 * 179.97438 * 5 4 3 7 7 C 1.39984 * 119.05533 * 0.25395 * 5 4 3 8 8 C 1.47219 * 120.91583 * 179.74944 * 7 5 4 9 9 N 1.29539 * 120.00036 * 359.97438 * 8 7 5 10 10 O 1.41600 * 120.00389 * 180.02562 * 9 8 7 11 11 C 1.41046 * 118.16745 * 359.48731 * 7 5 4 12 12 N 1.38143 * 120.57312 * 180.23860 * 11 7 5 13 13 C 1.46500 * 119.99811 * 180.27475 * 12 11 7 14 14 C 1.53004 * 109.47221 * 180.02562 * 13 12 11 15 15 C 1.53005 * 109.47158 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47018 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99905 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99691 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00532 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99666 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46748 * 90.00732 * 20 18 16 22 22 H 1.48499 * 109.47367 * 210.00018 * 20 18 16 23 23 H 1.48489 * 109.47483 * 330.00598 * 20 18 16 24 24 N 1.32543 * 118.98120 * 179.97438 * 3 2 1 25 25 H 1.09004 * 109.46581 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47410 * 299.99958 * 1 2 3 27 27 H 1.09000 * 109.47019 * 60.00136 * 1 2 3 28 28 H 1.08001 * 120.00003 * 179.97438 * 8 7 5 29 29 H 0.96700 * 113.99952 * 180.02562 * 10 9 8 30 30 H 0.96998 * 120.00215 * 0.28273 * 12 11 7 31 31 H 1.09000 * 109.47818 * 300.00352 * 13 12 11 32 32 H 1.09010 * 109.47095 * 60.00295 * 13 12 11 33 33 H 1.08997 * 109.47223 * 300.00363 * 14 13 12 34 34 H 1.08994 * 109.46878 * 60.00459 * 14 13 12 35 35 H 1.09005 * 109.46857 * 299.99791 * 15 14 13 36 36 H 1.08998 * 109.47128 * 59.99746 * 15 14 13 37 37 H 0.97000 * 120.00046 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.0844 2.5700 -0.0005 5 6 1.2662 3.8801 -0.0010 6 17 -0.0948 4.9577 -0.0024 7 6 2.5717 4.3853 -0.0065 8 6 2.8213 5.8362 -0.0128 9 7 1.8255 6.6647 -0.0139 10 8 2.0654 8.0602 -0.0205 11 6 3.6414 3.4660 0.0000 12 7 4.9495 3.9101 0.0000 13 6 6.0510 2.9442 0.0006 14 6 7.3856 3.6924 0.0011 15 6 8.5359 2.6836 0.0012 16 6 9.8504 3.4206 0.0023 17 1 9.8640 4.5005 0.0034 18 6 11.0356 2.7162 0.0031 19 7 11.0191 1.4012 0.0023 20 14 12.6649 3.6298 0.0038 21 1 13.0960 3.8719 1.4041 22 1 13.6901 2.8142 -0.6956 23 1 12.5041 4.9293 -0.6964 24 7 3.3693 2.1665 0.0005 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.8346 6.2098 -0.0165 29 1 1.2614 8.5975 -0.0204 30 1 5.1388 4.8615 -0.0003 31 1 5.9853 2.3186 0.8908 32 1 5.9855 2.3179 -0.8892 33 1 7.4516 4.3182 -0.8888 34 1 7.4508 4.3183 0.8911 35 1 8.4700 2.0575 0.8910 36 1 8.4705 2.0579 -0.8890 37 1 11.8530 0.9057 0.0032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157638261.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:41 Heat of formation + Delta-G solvation = 48.184966 kcal Electronic energy + Delta-G solvation = -22400.787782 eV Core-core repulsion = 18753.252050 eV Total energy + Delta-G solvation = -3647.535731 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.066 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.12843 -37.34826 -37.27662 -36.68531 -34.43709 -33.98952 -32.76115 -31.44752 -30.19557 -29.06505 -26.77699 -25.67942 -23.91879 -22.54258 -21.39639 -20.70451 -19.08616 -18.61183 -17.32659 -16.42594 -16.36340 -15.97270 -15.89860 -15.32669 -14.81852 -14.77672 -14.61764 -14.43787 -14.16464 -13.94778 -13.61220 -12.93258 -12.90343 -12.37729 -12.22409 -11.90450 -11.73916 -11.54093 -11.37770 -10.95038 -10.83909 -10.82190 -10.66672 -10.62453 -9.95242 -9.94842 -9.73730 -9.64193 -9.46173 -9.19113 -8.42813 -8.40959 -7.91159 -6.06499 -4.09879 0.09822 0.90118 0.99255 1.38603 1.96644 1.99890 2.70329 2.89732 3.28056 3.34843 3.37476 3.43475 4.09572 4.26649 4.37623 4.41860 4.79268 4.92030 4.97165 5.18520 5.29575 5.35374 5.54848 5.59269 5.63248 6.01432 6.34093 6.35070 6.46376 6.47284 6.85188 6.90598 7.18259 7.39678 7.56881 7.68205 7.77507 7.91440 8.31992 8.96451 9.54794 11.04657 Molecular weight = 330.07amu Principal moments of inertia in cm(-1) A = 0.012014 B = 0.002822 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.082007 B = 9920.409712 C =12219.429098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 S 0.031 5.969 3 C 0.368 3.632 4 N -0.573 5.573 5 C 0.297 3.703 6 Cl 0.016 6.984 7 C -0.235 4.235 8 C 0.157 3.843 9 N -0.317 5.317 10 O -0.415 6.415 11 C 0.494 3.506 12 N -0.683 5.683 13 C 0.119 3.881 14 C -0.124 4.124 15 C 0.026 3.974 16 C -0.524 4.524 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 N -0.550 5.550 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.124 0.876 29 H 0.404 0.596 30 H 0.413 0.587 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.761 3.529 -0.013 25.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 S 0.265 5.735 3 C -0.009 4.009 4 N -0.299 5.299 5 C 0.121 3.879 6 Cl 0.045 6.955 7 C -0.252 4.252 8 C -0.053 4.053 9 N -0.060 5.060 10 O -0.323 6.323 11 C 0.241 3.759 12 N -0.311 5.311 13 C -0.003 4.003 14 C -0.162 4.162 15 C -0.011 4.011 16 C -0.563 4.563 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.531 5.531 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 N -0.278 5.278 25 H 0.125 0.875 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.142 0.858 29 H 0.252 0.748 30 H 0.251 0.749 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.038 0.962 36 H 0.039 0.961 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.336 1.341 -0.018 24.373 hybrid contribution 0.583 3.407 0.010 3.456 sum -23.753 4.748 -0.008 24.223 Atomic orbital electron populations 1.23631 0.94381 1.06406 1.07520 1.86100 1.06355 0.91993 1.89088 1.24770 0.85310 1.00335 0.90495 1.68183 1.34388 1.02222 1.25153 1.21879 0.87666 0.89061 0.89295 1.98439 1.42564 1.59366 1.95094 1.18827 0.92296 0.91594 1.22490 1.23476 0.97105 0.90519 0.94236 1.77044 1.26118 0.88978 1.13812 1.88430 1.36726 1.11764 1.95344 1.18357 0.85687 0.87456 0.84411 1.45112 1.01652 1.10699 1.73687 1.21894 0.84404 0.91164 1.02878 1.21947 0.93060 1.00118 1.01093 1.19010 0.90756 0.93590 0.97783 1.21180 0.90908 0.92988 1.51193 0.92659 1.25014 0.99310 0.94850 0.95183 1.69957 1.27171 1.05639 1.50380 0.86587 0.83509 0.79729 0.78135 1.20633 1.21160 1.19894 1.68128 1.20794 1.13607 1.25291 0.87483 0.88888 0.88893 0.85846 0.74831 0.74888 0.90893 0.90887 0.92563 0.92564 0.96152 0.96135 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.61 101.05 0.97 -0.12 16 2 S 0.03 0.33 22.89 -107.50 -2.46 -2.13 16 3 C 0.37 4.96 7.85 -90.73 -0.71 4.25 16 4 N -0.57 -7.44 9.08 -10.25 -0.09 -7.53 16 5 C 0.30 3.83 7.37 -16.71 -0.12 3.71 16 6 Cl 0.02 0.18 26.10 -51.86 -1.35 -1.17 16 7 C -0.23 -3.01 5.92 -104.53 -0.62 -3.62 16 8 C 0.16 1.83 10.60 -14.87 -0.16 1.67 16 9 N -0.32 -3.72 8.87 32.06 0.28 -3.43 16 10 O -0.41 -4.28 14.95 -11.47 -0.17 -4.46 16 11 C 0.49 6.82 7.53 -154.80 -1.17 5.65 16 12 N -0.68 -8.95 5.63 -60.02 -0.34 -9.29 16 13 C 0.12 1.86 5.72 -4.04 -0.02 1.84 16 14 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 15 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 16 C -0.52 -14.26 9.11 -34.44 -0.31 -14.57 16 17 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 20 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 N -0.55 -8.18 9.63 -12.41 -0.12 -8.30 16 25 H 0.11 0.52 8.14 -51.91 -0.42 0.09 16 26 H 0.09 0.70 8.11 -51.92 -0.42 0.27 16 27 H 0.09 0.70 8.11 -51.92 -0.42 0.27 16 28 H 0.12 1.24 6.55 -52.49 -0.34 0.89 16 29 H 0.40 2.26 9.28 45.56 0.42 2.68 16 30 H 0.41 4.52 6.60 -40.82 -0.27 4.26 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 352.38 15.07 5.31 5.31 Total: -1.00 -31.74 352.38 -9.28 -41.02 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -3.53 Total: 0.89 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.52 Total: -1.58 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.47 Total: -54.02 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -0.17 Total: -4.46 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 0.33 SS G_CDS: -2.46 Total: -2.13 kcal Atomic # 17 Polarization: 0.18 SS G_CDS: -1.35 Total: -1.17 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.74 -9.28 -41.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157638261.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.204 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds