Wall clock time and date at job start Sat Apr 11 2020 02:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30701 * 1 3 3 Si 1.86802 * 119.99403 * 2 1 4 4 H 1.48500 * 109.46882 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47454 * 299.99949 * 3 2 1 6 6 H 1.48501 * 109.47457 * 60.00518 * 3 2 1 7 7 C 1.40052 * 120.00279 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00003 * 179.97438 * 7 2 1 9 9 C 1.41578 * 120.00009 * 0.02562 * 7 2 1 10 10 N 1.33446 * 119.23382 * 359.97438 * 9 7 2 11 11 C 1.32185 * 120.85579 * 179.97438 * 10 9 7 12 12 Cl 1.73591 * 120.33916 * 179.97438 * 11 10 9 13 13 C 1.38843 * 119.31953 * 359.72456 * 11 10 9 14 14 C 1.39999 * 118.59341 * 0.55645 * 13 11 10 15 15 N 1.38553 * 120.44882 * 179.71206 * 14 13 11 16 16 C 1.46505 * 119.99727 * 359.72763 * 15 14 13 17 17 C 1.50697 * 109.46646 * 179.97438 * 16 15 14 18 18 N 1.29914 * 124.85234 * 90.00632 * 17 16 15 19 19 C 1.36050 * 108.79650 * 179.72855 * 18 17 16 20 20 C 1.39590 * 133.80162 * 180.02562 * 19 18 17 21 21 C 1.37684 * 119.73265 * 179.97438 * 20 19 18 22 22 C 1.38726 * 120.41759 * 0.02562 * 21 20 19 23 23 C 1.37901 * 120.47822 * 359.97438 * 22 21 20 24 24 C 1.38678 * 119.87552 * 0.02562 * 23 22 21 25 25 O 1.34226 * 124.85834 * 269.69174 * 17 16 15 26 26 N 1.32593 * 119.10724 * 359.44310 * 14 13 11 27 27 H 0.96998 * 119.99788 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.70444 * 180.30063 * 13 11 10 29 29 H 0.96993 * 119.99563 * 179.72443 * 15 14 13 30 30 H 1.08995 * 109.46867 * 59.99812 * 16 15 14 31 31 H 1.08994 * 109.47221 * 300.00099 * 16 15 14 32 32 H 1.08000 * 120.13518 * 359.95701 * 20 19 18 33 33 H 1.07993 * 119.79266 * 179.97438 * 21 20 19 34 34 H 1.08005 * 119.76129 * 180.02562 * 22 21 20 35 35 H 1.08006 * 120.06465 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2408 1.6179 0.0000 4 1 3.7009 1.3466 -0.0006 5 1 1.8821 2.3965 -1.2124 6 1 1.8822 2.3965 1.2125 7 6 2.0073 -1.2129 -0.0005 8 1 3.0873 -1.2128 -0.0010 9 6 1.2995 -2.4390 -0.0016 10 7 -0.0348 -2.4212 -0.0016 11 6 -0.7278 -3.5468 -0.0031 12 17 -2.4633 -3.5081 -0.0024 13 6 -0.0534 -4.7604 -0.0106 14 6 1.3465 -4.7491 -0.0043 15 7 2.0583 -5.9378 -0.0054 16 6 1.3461 -7.2180 -0.0071 17 6 2.3436 -8.3476 -0.0086 18 7 2.8349 -8.9056 1.0568 19 6 3.6958 -9.8891 0.6792 20 6 4.4923 -10.7971 1.3789 21 6 5.2754 -11.6934 0.6867 22 6 5.2778 -11.6988 -0.7006 23 6 4.4959 -10.8076 -1.4049 24 6 3.7010 -9.8979 -0.7239 25 8 2.8469 -8.9251 -1.1108 26 7 1.9821 -3.5854 -0.0028 27 1 -0.4850 0.8400 0.0004 28 1 -0.5973 -5.6935 -0.0168 29 1 3.0281 -5.9222 -0.0051 30 1 0.7208 -7.2847 -0.8973 31 1 0.7201 -7.2867 0.8825 32 1 4.4945 -10.7964 2.4589 33 1 5.8924 -12.3960 1.2270 34 1 5.8959 -12.4068 -1.2329 35 1 4.5026 -10.8180 -2.4849 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161965726.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:50 Heat of formation + Delta-G solvation = 89.836786 kcal Electronic energy + Delta-G solvation = -23550.148345 eV Core-core repulsion = 19768.974821 eV Total energy + Delta-G solvation = -3781.173524 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 330.062 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.48573 -39.15645 -38.31279 -36.16221 -35.58594 -34.85969 -33.56481 -31.65430 -30.97472 -30.57647 -29.25887 -26.82421 -26.40291 -23.45502 -22.70928 -22.22975 -21.92073 -21.26517 -18.38053 -18.16076 -17.54787 -17.01830 -16.78033 -16.18891 -15.56046 -14.95563 -14.60023 -14.40250 -14.27847 -14.12895 -13.92719 -13.70685 -13.13744 -12.99234 -12.79850 -12.73059 -12.54347 -11.80766 -11.67962 -11.43261 -11.42802 -11.21198 -10.87198 -10.69930 -10.38994 -10.23427 -10.10375 -9.19204 -9.14099 -9.09474 -8.78051 -8.33963 -7.55613 -7.33098 -6.61987 -4.85180 0.34322 0.91492 2.05036 2.21776 2.46374 2.89438 2.93014 3.04408 3.08643 3.10294 3.32336 3.44106 3.80846 3.90328 4.21576 4.50918 4.56636 4.76056 4.80697 4.85913 5.07198 5.27834 5.37051 5.56461 5.72742 5.79764 5.90973 5.97214 5.99041 5.99889 6.20893 6.31024 6.33035 6.71927 6.81281 7.04918 7.37667 7.53021 7.98964 8.10057 8.43539 8.52766 8.96610 10.02934 10.17735 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.016912 B = 0.002549 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.273638 B =10980.544724 C =12220.479343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.064 3.936 3 Si 0.920 3.080 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.390 4.390 8 H 0.097 0.903 9 C 0.434 3.566 10 N -0.524 5.524 11 C 0.272 3.728 12 Cl -0.079 7.079 13 C -0.408 4.408 14 C 0.460 3.540 15 N -0.727 5.727 16 C 0.231 3.769 17 C 0.246 3.754 18 N -0.460 5.460 19 C 0.019 3.981 20 C -0.058 4.058 21 C -0.123 4.123 22 C -0.094 4.094 23 C -0.093 4.093 24 C 0.011 3.989 25 O -0.206 6.206 26 N -0.637 5.637 27 H 0.278 0.722 28 H 0.113 0.887 29 H 0.402 0.598 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.898 -18.134 -1.100 19.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.320 5.320 2 C -0.164 4.164 3 Si 0.743 3.257 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.425 4.425 8 H 0.115 0.885 9 C 0.198 3.802 10 N -0.246 5.246 11 C 0.090 3.910 12 Cl -0.051 7.051 13 C -0.441 4.441 14 C 0.213 3.787 15 N -0.367 5.367 16 C 0.105 3.895 17 C 0.034 3.966 18 N -0.189 5.189 19 C -0.093 4.093 20 C -0.077 4.077 21 C -0.142 4.142 22 C -0.112 4.112 23 C -0.112 4.112 24 C -0.040 4.040 25 O -0.097 6.097 26 N -0.367 5.367 27 H 0.089 0.911 28 H 0.131 0.869 29 H 0.237 0.763 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.766 -16.981 -0.495 17.940 hybrid contribution 0.100 -0.357 -0.699 0.791 sum 5.866 -17.338 -1.193 18.342 Atomic orbital electron populations 1.70154 1.07256 1.28416 1.26168 1.26148 0.95078 1.01513 0.93670 0.86060 0.80789 0.80120 0.78701 1.18098 1.19622 1.19602 1.19423 0.94858 0.87225 1.40983 0.88468 1.19469 0.83574 0.89789 0.87339 1.68612 1.08134 1.25624 1.22187 1.21429 0.85474 0.90686 0.93415 1.98299 1.11387 1.98814 1.96636 1.20896 0.92894 0.97406 1.32922 1.17923 0.87195 0.85764 0.87810 1.43792 1.08185 1.00719 1.84027 1.19556 0.88602 0.76386 1.04971 1.26453 0.95944 0.96064 0.78169 1.70716 1.10874 1.08509 1.28849 1.19969 0.99887 0.98038 0.91400 1.20367 0.94094 0.92783 1.00458 1.21060 0.99645 0.99245 0.94236 1.21035 0.98054 0.97872 0.94215 1.19922 0.96442 0.94314 1.00483 1.20407 0.95805 0.93147 0.94644 1.84553 1.48319 1.40648 1.36151 1.68185 1.40142 0.96826 1.31535 0.91112 0.86910 0.76272 0.88791 0.87400 0.84518 0.84485 0.84190 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.10 11.42 55.55 0.63 -17.47 16 2 C 0.06 1.59 5.50 -17.35 -0.10 1.49 16 3 Si 0.92 18.10 29.56 -169.99 -5.02 13.07 16 4 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 7 C -0.39 -10.38 9.37 -37.63 -0.35 -10.73 16 8 H 0.10 2.48 7.85 -52.49 -0.41 2.07 16 9 C 0.43 11.98 7.37 -158.35 -1.17 10.82 16 10 N -0.52 -14.37 7.86 -9.83 -0.08 -14.44 16 11 C 0.27 6.58 7.33 -17.18 -0.13 6.46 16 12 Cl -0.08 -1.64 29.15 -51.86 -1.51 -3.15 16 13 C -0.41 -8.88 9.23 -38.70 -0.36 -9.24 16 14 C 0.46 10.21 7.71 -154.97 -1.19 9.01 16 15 N -0.73 -12.81 5.70 -61.44 -0.35 -13.16 16 16 C 0.23 3.20 5.54 -5.19 -0.03 3.17 16 17 C 0.25 3.47 7.60 -13.09 -0.10 3.37 16 18 N -0.46 -6.86 11.34 -8.71 -0.10 -6.96 16 19 C 0.02 0.25 7.24 -84.71 -0.61 -0.36 16 20 C -0.06 -0.58 10.10 -39.28 -0.40 -0.98 16 21 C -0.12 -0.90 10.02 -39.60 -0.40 -1.30 16 22 C -0.09 -0.66 10.03 -39.52 -0.40 -1.06 16 23 C -0.09 -0.86 10.06 -39.54 -0.40 -1.26 16 24 C 0.01 0.14 7.43 -38.64 -0.29 -0.15 16 25 O -0.21 -2.88 10.77 3.64 0.04 -2.84 16 26 N -0.64 -16.38 10.39 -11.89 -0.12 -16.50 16 27 H 0.28 6.45 8.29 -40.82 -0.34 6.12 16 28 H 0.11 2.07 6.85 -52.49 -0.36 1.71 16 29 H 0.40 7.01 8.59 -40.82 -0.35 6.66 16 30 H 0.09 1.16 7.96 -51.93 -0.41 0.75 16 31 H 0.11 1.41 7.98 -51.93 -0.41 1.00 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 34 H 0.14 0.55 8.06 -52.48 -0.42 0.12 16 35 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 331.77 15.07 5.00 5.00 Total: -1.00 -31.39 331.77 -10.20 -41.59 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -2.78 Total: 5.64 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: -5.91 Total: 9.23 kcal Atomic # 7 Polarization: -68.52 SS G_CDS: -0.02 Total: -68.53 kcal Atomic # 8 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.02 Total: 13.07 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -1.51 Total: -3.15 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.39 -10.20 -41.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161965726.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.423 kcal (2) G-P(sol) polarization free energy of solvation -31.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds