Wall clock time and date at job start Sat Apr 11 2020 02:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34753 * 117.00198 * 2 1 4 4 O 1.21502 * 119.99483 * 359.97438 * 3 2 1 5 5 C 1.47476 * 119.99906 * 179.97438 * 3 2 1 6 6 C 1.39786 * 120.06100 * 359.97438 * 5 3 2 7 7 C 1.38186 * 119.93457 * 180.02562 * 6 5 3 8 8 O 1.36002 * 119.96747 * 179.97438 * 7 6 5 9 9 C 1.39264 * 120.06226 * 0.02562 * 7 6 5 10 10 O 1.35888 * 119.93696 * 179.97438 * 9 7 6 11 11 C 1.42902 * 116.99956 * 269.97790 * 10 9 7 12 12 C 1.39229 * 120.12588 * 359.97438 * 9 7 6 13 13 O 1.36006 * 119.97130 * 179.97438 * 12 9 7 14 14 C 1.42897 * 117.00130 * 185.92261 * 13 12 9 15 15 H 1.09002 * 109.46756 * 21.70029 * 14 13 12 16 16 C 1.50692 * 109.47187 * 141.70136 * 14 13 12 17 17 H 1.08006 * 120.00292 * 0.02562 * 16 14 13 18 18 C 1.37880 * 120.00083 * 180.02562 * 16 14 13 19 19 N 1.31518 * 120.00070 * 179.97438 * 18 16 14 20 20 Si 1.86795 * 119.99965 * 0.02562 * 18 16 14 21 21 H 1.48501 * 109.47304 * 269.99937 * 20 18 16 22 22 H 1.48504 * 109.47187 * 30.00332 * 20 18 16 23 23 H 1.48504 * 109.47392 * 149.99768 * 20 18 16 24 24 C 1.52997 * 109.47142 * 261.70416 * 14 13 12 25 25 Cl 1.80303 * 109.47237 * 64.99951 * 24 14 13 26 26 C 1.38222 * 120.05974 * 0.26772 * 12 9 7 27 27 H 1.09002 * 109.46966 * 59.99984 * 1 2 3 28 28 H 1.09003 * 109.47435 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47116 * 300.00257 * 1 2 3 30 30 H 1.07993 * 120.03073 * 0.02562 * 6 5 3 31 31 H 0.96697 * 114.00260 * 270.01745 * 8 7 6 32 32 H 1.08996 * 109.47667 * 300.00292 * 11 10 9 33 33 H 1.09004 * 109.46710 * 60.00276 * 11 10 9 34 34 H 1.08995 * 109.47052 * 179.97438 * 11 10 9 35 35 H 0.97002 * 119.99894 * 179.97438 * 19 18 16 36 36 H 1.08996 * 109.47303 * 184.99950 * 24 14 13 37 37 H 1.08995 * 109.47285 * 305.00183 * 24 14 13 38 38 H 1.08004 * 120.03496 * 179.72945 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5366 1.2777 0.0006 6 6 4.2991 0.1062 0.0017 7 6 5.6789 0.1815 0.0027 8 8 6.4214 -0.9580 0.0043 9 6 6.3098 1.4230 0.0033 10 8 7.6668 1.4941 0.0048 11 6 8.3132 1.5287 1.2789 12 6 5.5528 2.5915 0.0022 13 8 6.1723 3.8023 0.0032 14 6 5.3401 4.9567 0.1334 15 1 4.3914 4.6712 0.5880 16 6 6.0279 5.9761 1.0043 17 1 7.0032 5.7640 1.4169 18 6 5.4121 7.1798 1.2746 19 7 6.0121 8.0693 2.0351 20 14 3.7249 7.5465 0.5617 21 1 3.8785 8.2055 -0.7602 22 1 2.9703 6.2780 0.3978 23 1 2.9843 8.4476 1.4809 24 6 5.0823 5.5581 -1.2495 25 17 4.1303 4.3935 -2.2435 26 6 4.1723 2.5222 0.0062 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.8103 -0.8568 0.0017 31 1 6.6352 -1.2869 0.8881 32 1 7.9735 2.4024 1.8351 33 1 8.0666 0.6248 1.8360 34 1 9.3924 1.5847 1.1373 35 1 5.5790 8.9163 2.2249 36 1 4.5225 6.4873 -1.1431 37 1 6.0340 5.7616 -1.7404 38 1 3.5855 3.4289 0.0097 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234079708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:52 Heat of formation + Delta-G solvation = -190.113660 kcal Electronic energy + Delta-G solvation = -26897.993942 eV Core-core repulsion = 22732.786433 eV Total energy + Delta-G solvation = -4165.207508 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.079 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.08937 -41.21436 -39.89284 -38.50241 -37.70771 -37.17373 -36.79680 -35.34303 -32.74605 -31.31118 -30.61741 -28.79868 -27.69838 -27.22941 -25.15466 -24.50625 -22.48103 -22.27584 -20.14472 -19.40171 -18.75376 -18.53593 -18.14184 -17.88924 -17.48120 -17.38068 -16.91357 -16.70120 -16.14665 -15.83430 -15.26568 -15.22356 -15.07407 -14.91002 -14.77451 -14.47362 -14.41307 -13.61887 -13.40406 -13.32730 -13.17615 -12.96434 -12.74506 -12.58309 -12.47486 -12.27965 -12.00052 -11.85587 -11.78429 -11.64131 -11.34611 -11.25377 -10.91998 -10.87237 -9.84211 -9.25686 -8.55065 -6.65813 -0.67256 0.11048 1.12056 1.16028 1.23910 1.27144 1.32406 1.52759 2.07254 2.10625 2.32646 2.69738 2.76811 3.07767 3.67363 3.73819 3.81918 3.89368 3.95651 4.09963 4.17994 4.27668 4.31787 4.33498 4.42085 4.51406 4.65724 4.70223 4.79964 4.82169 4.93685 5.06568 5.12209 5.19462 5.29510 5.80527 6.18241 6.40363 6.53499 6.58380 6.80461 6.97975 8.60101 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.010206 B = 0.005814 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.735543 B = 4814.493695 C = 6538.122833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.347 6.347 3 C 0.515 3.485 4 O -0.529 6.529 5 C -0.091 4.091 6 C -0.099 4.099 7 C 0.124 3.876 8 O -0.479 6.479 9 C 0.058 3.942 10 O -0.335 6.335 11 C 0.031 3.969 12 C 0.110 3.890 13 O -0.297 6.297 14 C 0.188 3.812 15 H 0.046 0.954 16 C -0.536 4.536 17 H 0.056 0.944 18 C 0.044 3.956 19 N -0.915 5.915 20 Si 0.907 3.093 21 H -0.246 1.246 22 H -0.249 1.249 23 H -0.274 1.274 24 C -0.052 4.052 25 Cl -0.199 7.199 26 C -0.145 4.145 27 H 0.060 0.940 28 H 0.142 0.858 29 H 0.063 0.937 30 H 0.180 0.820 31 H 0.413 0.587 32 H 0.030 0.970 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.279 0.721 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.049 -18.780 -2.145 19.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.263 6.263 3 C 0.361 3.639 4 O -0.420 6.420 5 C -0.093 4.093 6 C -0.117 4.117 7 C 0.078 3.922 8 O -0.292 6.292 9 C 0.013 3.987 10 O -0.252 6.252 11 C -0.062 4.062 12 C 0.063 3.937 13 O -0.210 6.210 14 C 0.131 3.869 15 H 0.064 0.936 16 C -0.574 4.574 17 H 0.074 0.926 18 C -0.158 4.158 19 N -0.552 5.552 20 Si 0.731 3.269 21 H -0.172 1.172 22 H -0.173 1.173 23 H -0.200 1.200 24 C -0.114 4.114 25 Cl -0.173 7.173 26 C -0.164 4.164 27 H 0.079 0.921 28 H 0.160 0.840 29 H 0.082 0.918 30 H 0.197 0.803 31 H 0.273 0.727 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.132 0.868 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.127 0.873 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.043 -18.290 -2.881 19.476 hybrid contribution -0.886 1.191 0.525 1.575 sum -6.930 -17.098 -2.356 18.599 Atomic orbital electron populations 1.23660 0.73966 1.06241 1.02662 1.86529 1.25420 1.30611 1.83766 1.21024 0.88815 0.81872 0.72233 1.90864 1.67207 1.37216 1.46694 1.18670 0.89474 0.93600 1.07533 1.21595 0.91726 0.98937 0.99481 1.17992 0.89233 0.84494 1.00485 1.84861 1.71916 1.37099 1.35327 1.18798 0.84194 0.89927 1.05810 1.86041 1.14205 1.93952 1.30990 1.23193 0.98707 1.01048 0.83293 1.19361 0.90802 0.86603 0.96891 1.86215 1.36477 1.11776 1.86494 1.20647 0.92139 0.82751 0.91319 0.93633 1.20819 1.05977 1.00347 1.30211 0.92618 1.25464 1.00734 0.95032 0.94578 1.69912 1.40075 1.08307 1.36865 0.86457 0.80483 0.80369 0.79630 1.17160 1.17286 1.19981 1.25882 0.98221 0.93464 0.93843 1.98676 1.77143 1.66312 1.75127 1.21401 0.93235 0.98888 1.02898 0.92071 0.83979 0.91826 0.80299 0.72718 0.95071 0.90906 0.86842 0.91128 0.89322 0.87271 0.84705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.57 113.37 1.20 1.64 16 2 O -0.35 -7.93 9.80 -56.64 -0.56 -8.49 16 3 C 0.51 15.72 7.89 70.26 0.55 16.27 16 4 O -0.53 -19.55 16.13 19.83 0.32 -19.24 16 5 C -0.09 -2.84 5.87 -20.10 -0.12 -2.96 16 6 C -0.10 -2.43 9.54 22.63 0.22 -2.22 16 7 C 0.12 3.25 6.70 22.50 0.15 3.40 16 8 O -0.48 -9.65 13.28 -79.48 -1.06 -10.70 16 9 C 0.06 1.96 5.75 22.76 0.13 2.09 16 10 O -0.34 -11.28 9.96 -68.01 -0.68 -11.96 16 11 C 0.03 0.80 11.13 113.37 1.26 2.06 16 12 C 0.11 4.33 6.22 22.50 0.14 4.47 16 13 O -0.30 -13.52 9.46 -79.52 -0.75 -14.27 16 14 C 0.19 8.86 1.74 29.84 0.05 8.92 16 15 H 0.05 2.20 4.54 -2.39 -0.01 2.19 16 16 C -0.54 -29.45 9.47 25.60 0.24 -29.21 16 17 H 0.06 3.42 8.06 -2.91 -0.02 3.39 16 18 C 0.04 2.41 5.45 84.65 0.46 2.87 16 19 N -0.91 -52.97 13.96 21.45 0.30 -52.67 16 20 Si 0.91 40.80 24.41 68.60 1.67 42.47 16 21 H -0.25 -10.26 6.83 99.48 0.68 -9.58 16 22 H -0.25 -10.96 6.53 99.48 0.65 -10.31 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 24 C -0.05 -2.20 5.83 71.98 0.42 -1.78 16 25 Cl -0.20 -7.78 25.67 -2.72 -0.07 -7.85 16 26 C -0.15 -5.47 6.74 22.63 0.15 -5.32 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 28 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.18 3.19 7.60 -2.91 -0.02 3.17 16 31 H 0.41 3.78 9.06 -74.06 -0.67 3.11 16 32 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.11 2.40 8.14 -2.39 -0.02 2.39 16 35 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16 36 H 0.09 3.78 3.22 -2.39 -0.01 3.78 16 37 H 0.11 4.49 8.14 -2.39 -0.02 4.47 16 38 H 0.14 5.69 4.38 -2.91 -0.01 5.68 16 Total: -1.00 -70.44 338.19 4.43 -66.01 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.38 Total: 16.45 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 4.86 Total: 0.24 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.30 Total: -52.67 kcal Atomic # 8 Polarization: -61.93 SS G_CDS: -2.72 Total: -64.65 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.67 Total: 42.47 kcal Atomic # 17 Polarization: -7.78 SS G_CDS: -0.07 Total: -7.85 kcal Total: -70.44 4.43 -66.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234079708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.104 kcal (2) G-P(sol) polarization free energy of solvation -70.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds