Wall clock time and date at job start Sat Apr 11 2020 02:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38078 * 119.50594 * 2 1 4 4 C 1.38740 * 119.34584 * 179.74354 * 3 2 1 5 5 C 1.38983 * 118.42154 * 0.47458 * 4 3 2 6 6 N 1.40044 * 120.50748 * 179.78150 * 5 4 3 7 7 C 1.34777 * 119.99965 * 24.46022 * 6 5 4 8 8 O 1.21625 * 120.00354 * 5.80216 * 7 6 5 9 9 C 1.47405 * 119.99809 * 185.80887 * 7 6 5 10 10 C 1.39689 * 120.21708 * 359.97340 * 9 7 6 11 11 C 1.37799 * 119.93937 * 180.02562 * 10 9 7 12 12 C 1.38663 * 120.37933 * 0.02562 * 11 10 9 13 13 C 1.37908 * 120.44465 * 359.97438 * 12 11 10 14 14 C 1.39114 * 120.05114 * 359.97438 * 13 12 11 15 15 S 1.76192 * 120.19242 * 180.02562 * 14 13 12 16 16 C 1.76201 * 100.00026 * 354.26406 * 15 14 13 17 17 H 1.07994 * 120.00071 * 5.04572 * 16 15 14 18 18 C 1.38805 * 120.00218 * 185.03784 * 16 15 14 19 19 N 1.31548 * 120.00333 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99923 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47099 * 89.99893 * 20 18 16 22 22 H 1.48495 * 109.47309 * 209.99624 * 20 18 16 23 23 H 1.48503 * 109.47048 * 329.99937 * 20 18 16 24 24 C 1.39510 * 118.98215 * 359.50847 * 5 4 3 25 25 O 1.35749 * 119.72557 * 180.25453 * 24 5 4 26 26 N 1.31996 * 119.51389 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47657 * 270.02385 * 1 2 3 28 28 H 1.09003 * 109.47157 * 30.02771 * 1 2 3 29 29 H 1.09007 * 109.46944 * 150.01848 * 1 2 3 30 30 H 1.07995 * 120.33292 * 0.02562 * 3 2 1 31 31 H 1.08000 * 120.78946 * 180.23320 * 4 3 2 32 32 H 0.96997 * 119.99879 * 204.45658 * 6 5 4 33 33 H 1.07999 * 120.02972 * 359.97438 * 10 9 7 34 34 H 1.07994 * 119.81080 * 180.02562 * 11 10 9 35 35 H 1.08004 * 119.77779 * 180.27812 * 12 11 10 36 36 H 1.07997 * 119.98146 * 180.02562 * 13 12 11 37 37 H 0.97002 * 120.00391 * 180.02562 * 19 18 16 38 38 H 0.96696 * 113.99852 * 89.99578 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.2017 0.0000 4 6 3.5744 1.1978 0.0054 5 6 4.2325 -0.0263 0.0006 6 7 5.6319 -0.0812 0.0011 7 6 6.3466 0.9520 0.4892 8 8 5.7791 1.8849 1.0248 9 6 7.8161 0.9514 0.3738 10 6 8.4726 -0.1179 -0.2402 11 6 9.8467 -0.1128 -0.3445 12 6 10.5841 0.9488 0.1574 13 6 9.9522 2.0125 0.7665 14 6 8.5658 2.0267 0.8807 15 16 7.7546 3.3842 1.6576 16 6 9.1537 4.2930 2.2245 17 1 10.1501 3.9690 1.9631 18 6 8.9751 5.4254 3.0071 19 7 10.0196 6.1042 3.4299 20 14 7.2515 5.9856 3.4598 21 1 6.8411 5.3435 4.7344 22 1 7.2374 7.4616 3.6222 23 1 6.3058 5.5970 2.3827 24 6 3.4777 -1.1996 0.0009 25 8 4.1050 -2.4035 0.0015 26 7 2.1573 -1.1487 0.0005 27 1 -0.3634 0.0004 1.0276 28 1 -0.3634 0.8898 -0.5143 29 1 -0.3633 -0.8902 -0.5136 30 1 1.6444 2.1354 0.0004 31 1 4.1298 2.1241 0.0093 32 1 6.0867 -0.8627 -0.3498 33 1 7.9039 -0.9482 -0.6319 34 1 10.3521 -0.9404 -0.8199 35 1 11.6603 0.9449 0.0663 36 1 10.5339 2.8356 1.1544 37 1 9.8948 6.8954 3.9771 38 1 4.2867 -2.7519 0.8850 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756240708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:49 Heat of formation + Delta-G solvation = -28.242483 kcal Electronic energy + Delta-G solvation = -24628.267748 eV Core-core repulsion = 20947.557972 eV Total energy + Delta-G solvation = -3680.709776 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.19261 -40.79965 -39.15405 -38.22636 -36.26343 -34.84254 -33.31935 -32.53588 -31.92481 -31.69607 -28.07634 -27.96473 -25.08639 -24.58172 -23.67005 -23.16234 -21.65573 -20.32001 -19.64429 -19.23390 -18.27413 -17.77501 -17.42195 -17.14498 -16.70934 -16.26417 -16.18845 -15.57172 -15.45188 -15.38103 -15.11130 -14.82382 -14.48526 -14.13927 -13.81132 -13.69054 -13.57568 -13.22308 -13.14766 -13.10861 -12.96844 -12.65567 -12.54192 -12.29829 -11.93770 -11.68780 -11.48554 -11.37616 -10.67746 -10.62124 -10.56575 -10.04628 -9.96276 -9.13139 -8.69631 -8.61245 -6.33642 -0.32717 0.02738 0.19639 0.42713 0.97978 1.22970 1.37919 1.58847 1.78969 1.81145 2.13185 2.42260 2.61645 2.72549 2.77611 2.92335 3.56711 3.60672 3.84354 3.88509 4.00155 4.17807 4.22239 4.47546 4.52336 4.54743 4.71930 4.73427 4.84618 4.90227 5.00264 5.05488 5.18000 5.28447 5.30516 5.43327 5.57557 5.62699 5.65060 5.99397 6.16501 6.28862 6.52316 6.82256 6.87266 7.00562 8.49803 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.012378 B = 0.004033 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.505264 B = 6941.506999 C = 9034.058523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.118 3.882 3 C -0.154 4.154 4 C -0.093 4.093 5 C 0.080 3.920 6 N -0.644 5.644 7 C 0.553 3.447 8 O -0.526 6.526 9 C -0.176 4.176 10 C -0.053 4.053 11 C -0.147 4.147 12 C -0.066 4.066 13 C -0.170 4.170 14 C -0.049 4.049 15 S 0.032 5.968 16 C -0.588 4.588 17 H 0.083 0.917 18 C 0.055 3.945 19 N -0.906 5.906 20 Si 0.906 3.094 21 H -0.260 1.260 22 H -0.253 1.253 23 H -0.236 1.236 24 C 0.283 3.717 25 O -0.480 6.480 26 N -0.500 5.500 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.165 0.835 31 H 0.142 0.858 32 H 0.427 0.573 33 H 0.164 0.836 34 H 0.170 0.830 35 H 0.149 0.851 36 H 0.115 0.885 37 H 0.280 0.720 38 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.632 -16.764 -8.999 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.020 4.020 3 C -0.174 4.174 4 C -0.121 4.121 5 C -0.019 4.019 6 N -0.291 5.291 7 C 0.344 3.656 8 O -0.405 6.405 9 C -0.189 4.189 10 C -0.072 4.072 11 C -0.169 4.169 12 C -0.087 4.087 13 C -0.195 4.195 14 C -0.167 4.167 15 S 0.288 5.712 16 C -0.735 4.735 17 H 0.100 0.900 18 C -0.152 4.152 19 N -0.542 5.542 20 Si 0.727 3.273 21 H -0.185 1.185 22 H -0.177 1.177 23 H -0.160 1.160 24 C 0.101 3.899 25 O -0.289 6.289 26 N -0.220 5.220 27 H 0.107 0.893 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.183 0.817 31 H 0.160 0.840 32 H 0.268 0.732 33 H 0.181 0.819 34 H 0.187 0.813 35 H 0.166 0.834 36 H 0.133 0.867 37 H 0.089 0.911 38 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -14.567 -16.159 -8.842 23.484 hybrid contribution 2.278 0.981 0.858 2.625 sum -12.289 -15.178 -7.983 21.098 Atomic orbital electron populations 1.20793 0.85858 1.04627 1.04167 1.21532 0.98459 0.86619 0.95410 1.22195 0.93304 1.00700 1.01238 1.21925 0.95487 0.97865 0.96852 1.18902 0.84133 0.94532 1.04359 1.43047 1.03345 1.21242 1.61464 1.18521 0.87616 0.81960 0.77504 1.90726 1.71408 1.35775 1.42584 1.19272 0.91162 0.97947 1.10525 1.21484 0.95619 0.95489 0.94644 1.21386 0.93374 0.99713 1.02410 1.21582 1.01274 0.92128 0.93694 1.21487 0.93159 1.01286 1.03558 1.22493 0.97246 0.97593 0.99330 1.83882 1.09407 1.16120 1.61743 1.23672 0.96146 1.15483 1.38149 0.89976 1.25575 1.00987 0.95025 0.93616 1.69979 1.31810 1.18150 1.34283 0.86039 0.80397 0.79649 0.81204 1.18499 1.17740 1.15994 1.18709 0.86777 0.84413 1.00029 1.84723 1.76335 1.32161 1.35693 1.67045 1.08515 1.31441 1.15012 0.89283 0.88351 0.90398 0.81745 0.84009 0.73202 0.81865 0.81270 0.83375 0.86706 0.91077 0.72339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 10.16 71.24 0.72 -0.56 16 2 C 0.12 2.50 6.78 42.50 0.29 2.79 16 3 C -0.15 -3.42 9.72 22.35 0.22 -3.21 16 4 C -0.09 -2.63 8.82 22.57 0.20 -2.43 16 5 C 0.08 2.12 6.47 38.31 0.25 2.36 16 6 N -0.64 -16.21 5.23 -305.75 -1.60 -17.81 16 7 C 0.55 18.74 7.57 86.66 0.66 19.39 16 8 O -0.53 -21.81 10.98 -4.11 -0.05 -21.85 16 9 C -0.18 -6.01 5.89 -19.95 -0.12 -6.12 16 10 C -0.05 -1.24 9.53 22.52 0.21 -1.03 16 11 C -0.15 -3.24 10.02 22.27 0.22 -3.02 16 12 C -0.07 -1.90 10.02 22.29 0.22 -1.68 16 13 C -0.17 -6.88 9.26 22.40 0.21 -6.68 16 14 C -0.05 -2.12 6.15 23.04 0.14 -1.98 16 15 S 0.03 1.64 16.53 -56.49 -0.93 0.71 16 16 C -0.59 -34.28 9.63 67.96 0.65 -33.62 16 17 H 0.08 5.03 5.05 -2.91 -0.01 5.01 16 18 C 0.05 3.18 5.50 84.87 0.47 3.65 16 19 N -0.91 -54.60 13.96 21.65 0.30 -54.30 16 20 Si 0.91 44.03 27.74 68.60 1.90 45.93 16 21 H -0.26 -12.39 7.11 99.48 0.71 -11.69 16 22 H -0.25 -11.47 7.11 99.48 0.71 -10.77 16 23 H -0.24 -11.37 6.74 99.48 0.67 -10.70 16 24 C 0.28 6.81 7.77 84.95 0.66 7.47 16 25 O -0.48 -8.84 13.00 -90.75 -1.18 -10.02 16 26 N -0.50 -12.33 10.29 -296.50 -3.05 -15.38 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.10 0.87 8.07 -2.39 -0.02 0.85 16 29 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 31 H 0.14 4.68 5.88 -2.91 -0.02 4.66 16 32 H 0.43 7.76 6.41 -92.71 -0.59 7.16 16 33 H 0.16 2.29 6.42 -2.91 -0.02 2.27 16 34 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 35 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 36 H 0.12 5.40 4.94 -2.91 -0.01 5.39 16 37 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.42 4.13 9.06 -74.06 -0.67 3.46 16 Total: -1.00 -77.07 336.58 0.26 -76.81 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -0.15 Total: 20.57 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 5.01 Total: -24.66 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -4.35 Total: -87.49 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -1.22 Total: -31.87 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.90 Total: 45.93 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -0.93 Total: 0.71 kcal Total: -77.07 0.26 -76.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756240708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.572 kcal (2) G-P(sol) polarization free energy of solvation -77.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds