Wall clock time and date at job start Sat Apr 11 2020 02:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 S 1.80999 * 179.97438 * 2 1 4 4 C 1.76200 * 100.00256 * 324.62063 * 3 2 1 5 5 C 1.38711 * 120.09696 * 0.25803 * 4 3 2 6 6 C 1.38234 * 119.99697 * 180.29629 * 5 4 3 7 7 C 1.38285 * 120.19809 * 359.44314 * 6 5 4 8 8 C 1.38239 * 120.20021 * 0.28177 * 7 6 5 9 9 C 1.50698 * 120.00140 * 179.97438 * 8 7 6 10 10 F 1.39897 * 109.47152 * 359.97438 * 9 8 7 11 11 F 1.39901 * 109.47431 * 119.99568 * 9 8 7 12 12 F 1.39903 * 109.47072 * 239.99965 * 9 8 7 13 13 C 1.38698 * 119.99945 * 359.97438 * 8 7 6 14 14 N 1.39917 * 120.09690 * 180.02562 * 13 8 7 15 15 C 1.46898 * 110.99932 * 261.89017 * 14 13 8 16 16 C 1.52996 * 109.47292 * 174.65163 * 15 14 13 17 17 C 1.52999 * 109.47413 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47449 * 179.97438 * 17 16 15 19 19 H 1.08008 * 119.99904 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00121 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00051 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00241 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46734 * 89.99845 * 22 20 18 24 24 H 1.48500 * 109.47465 * 210.00015 * 22 20 18 25 25 H 1.48503 * 109.47178 * 330.00456 * 22 20 18 26 26 H 1.08004 * 120.00259 * 0.02562 * 5 4 3 27 27 H 1.08000 * 119.89520 * 179.72319 * 6 5 4 28 28 H 1.07999 * 119.89379 * 180.29737 * 7 6 5 29 29 H 1.00902 * 110.99578 * 137.93376 * 14 13 8 30 30 H 1.09004 * 109.46837 * 294.64953 * 15 14 13 31 31 H 1.09002 * 109.47314 * 54.64547 * 15 14 13 32 32 H 1.09004 * 109.47008 * 299.99685 * 16 15 14 33 33 H 1.09002 * 109.47444 * 59.99463 * 16 15 14 34 34 H 1.09004 * 109.47086 * 300.00017 * 17 16 15 35 35 H 1.08999 * 109.47192 * 60.00005 * 17 16 15 36 36 H 0.97003 * 120.00107 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 16 2.9459 0.0008 0.0000 4 6 3.2526 -1.4138 1.0047 5 6 2.1919 -2.1459 1.5176 6 6 2.4349 -3.2518 2.3106 7 6 3.7337 -3.6387 2.5857 8 6 4.7969 -2.9184 2.0741 9 6 6.2105 -3.3436 2.3772 10 9 6.1909 -4.4833 3.1883 11 9 6.8770 -3.6330 1.1817 12 9 6.8760 -2.3090 3.0435 13 6 4.5627 -1.8043 1.2818 14 7 5.6373 -1.0741 0.7625 15 6 5.9177 0.1085 1.5875 16 6 7.1766 0.8058 1.0681 17 6 7.4684 2.0380 1.9269 18 6 8.7087 2.7245 1.4157 19 1 9.2360 2.3224 0.5632 20 6 9.1704 3.8658 2.0363 21 7 10.2526 4.4651 1.5899 22 14 8.2581 4.5617 3.5104 23 1 8.8014 3.9634 4.7562 24 1 8.4346 6.0356 3.5512 25 1 6.8131 4.2391 3.3957 26 1 1.1762 -1.8493 1.3010 27 1 1.6077 -3.8180 2.7127 28 1 3.9178 -4.5063 3.2019 29 1 5.4671 -0.8135 -0.1973 30 1 5.0737 0.7963 1.5353 31 1 6.0729 -0.1984 2.6219 32 1 8.0207 0.1181 1.1203 33 1 7.0215 1.1128 0.0338 34 1 6.6242 2.7256 1.8744 35 1 7.6234 1.7314 2.9614 36 1 10.5776 5.2679 2.0267 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168434695.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:28:20 Heat of formation + Delta-G solvation = -86.557012 kcal Electronic energy + Delta-G solvation = -25481.808041 eV Core-core repulsion = 21256.712817 eV Total energy + Delta-G solvation = -4225.095224 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.071 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.06217 -47.63511 -47.42819 -40.24531 -36.98346 -36.50838 -33.76929 -32.56470 -31.82553 -29.73373 -26.86736 -25.87315 -23.62047 -22.70921 -22.15863 -21.18860 -20.22709 -18.83942 -18.35775 -18.34040 -17.24263 -16.75367 -16.39093 -16.10426 -15.28121 -14.99754 -14.56890 -14.44177 -14.34837 -14.23078 -14.14188 -14.01923 -13.91095 -13.70472 -13.62477 -13.58497 -13.22812 -13.08026 -12.71362 -12.58681 -12.29650 -11.93788 -11.61808 -11.35784 -11.07949 -10.84747 -10.61719 -10.07144 -9.84714 -9.79197 -9.48485 -9.18277 -9.03570 -8.52822 -8.14237 -6.03149 -4.01239 0.10182 0.32183 0.52896 0.92976 2.07856 2.31669 2.62464 2.81706 3.31639 3.39107 3.41577 3.58973 3.69597 3.98995 4.34802 4.45636 4.45953 4.46782 4.64647 4.89467 4.96577 5.30374 5.31962 5.39295 5.45836 5.63699 5.70000 5.97199 5.98764 6.36872 6.41903 6.45024 6.81718 6.85939 7.02286 7.29223 7.41852 7.79566 8.54808 9.02269 9.59228 11.10318 Molecular weight = 330.07amu Principal moments of inertia in cm(-1) A = 0.010243 B = 0.004186 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.024050 B = 6687.918544 C = 8617.187067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C 0.173 3.827 3 S 0.209 5.791 4 C -0.181 4.181 5 C -0.074 4.074 6 C -0.114 4.114 7 C -0.056 4.056 8 C -0.157 4.157 9 C 0.521 3.479 10 F -0.185 7.185 11 F -0.165 7.165 12 F -0.165 7.165 13 C 0.191 3.809 14 N -0.653 5.653 15 C 0.054 3.946 16 C -0.097 4.097 17 C -0.012 4.012 18 C -0.519 4.519 19 H 0.073 0.927 20 C 0.067 3.933 21 N -0.904 5.904 22 Si 0.878 3.122 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.265 1.265 26 H 0.127 0.873 27 H 0.141 0.859 28 H 0.147 0.853 29 H 0.360 0.640 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.016 0.984 35 H 0.012 0.988 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.735 -17.974 0.337 24.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.049 5.049 2 C -0.253 4.253 3 S 0.446 5.554 4 C -0.297 4.297 5 C -0.098 4.098 6 C -0.134 4.134 7 C -0.077 4.077 8 C -0.161 4.161 9 C 0.467 3.533 10 F -0.167 7.167 11 F -0.146 7.146 12 F -0.146 7.146 13 C 0.088 3.912 14 N -0.283 5.283 15 C -0.071 4.071 16 C -0.135 4.135 17 C -0.050 4.050 18 C -0.557 4.557 19 H 0.091 0.909 20 C -0.134 4.134 21 N -0.543 5.543 22 Si 0.706 3.294 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.190 1.190 26 H 0.145 0.855 27 H 0.159 0.841 28 H 0.165 0.835 29 H 0.183 0.817 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.031 0.969 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.049 -17.277 0.023 24.272 hybrid contribution -1.298 0.081 1.158 1.741 sum -18.347 -17.196 1.180 25.174 Atomic orbital electron populations 1.80966 1.12428 1.04607 1.06935 1.33292 0.98350 0.97168 0.96465 1.85821 0.81677 1.29026 1.58844 1.22701 0.97228 1.02299 1.07510 1.21288 0.97273 0.95019 0.96207 1.21049 0.96819 0.96884 0.98612 1.21125 0.91432 0.98508 0.96609 1.19892 0.92759 0.98458 1.04983 1.17829 0.86317 0.74554 0.74649 1.93143 1.96830 1.52531 1.74168 1.93238 1.82310 1.93248 1.45786 1.93258 1.82413 1.58135 1.80789 1.17976 0.87204 0.92636 0.93394 1.58152 1.36693 1.26281 1.07220 1.22506 0.99516 0.87505 0.97598 1.21463 0.94525 0.97679 0.99863 1.19536 0.97384 0.92875 0.95202 1.21107 1.09020 1.09556 1.15982 0.90931 1.25020 0.94733 0.96613 0.97074 1.69914 1.22924 1.20024 1.41399 0.86805 0.81003 0.78104 0.83521 1.20288 1.21451 1.19005 0.85502 0.84119 0.83534 0.81675 0.93811 0.89989 0.91453 0.92495 0.96622 0.96925 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -4.26 18.47 41.98 0.78 -3.48 16 2 C 0.17 1.71 14.13 45.91 0.65 2.36 16 3 S 0.21 1.84 20.27 -107.50 -2.18 -0.34 16 4 C -0.18 -1.72 6.09 -38.94 -0.24 -1.96 16 5 C -0.07 -0.61 9.27 -39.41 -0.37 -0.98 16 6 C -0.11 -0.80 10.04 -39.57 -0.40 -1.19 16 7 C -0.06 -0.45 9.43 -39.56 -0.37 -0.82 16 8 C -0.16 -1.66 5.38 -104.45 -0.56 -2.22 16 9 C 0.52 6.33 2.97 36.00 0.11 6.43 16 10 F -0.19 -2.04 15.97 2.25 0.04 -2.00 16 11 F -0.16 -2.18 16.88 2.25 0.04 -2.15 16 12 F -0.16 -2.36 15.18 2.25 0.03 -2.32 16 13 C 0.19 2.09 5.18 -83.53 -0.43 1.65 16 14 N -0.65 -7.99 5.00 -58.19 -0.29 -8.28 16 15 C 0.05 0.78 5.05 -3.83 -0.02 0.76 16 16 C -0.10 -1.78 5.46 -26.73 -0.15 -1.92 16 17 C -0.01 -0.27 4.04 -27.88 -0.11 -0.39 16 18 C -0.52 -14.48 9.66 -34.44 -0.33 -14.81 16 19 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 20 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 21 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 22 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 26 H 0.13 1.00 6.03 -52.48 -0.32 0.68 16 27 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 28 H 0.15 0.88 7.15 -52.49 -0.38 0.51 16 29 H 0.36 3.86 7.78 -39.29 -0.31 3.56 16 30 H 0.04 0.59 7.08 -51.93 -0.37 0.22 16 31 H 0.08 1.25 6.72 -51.93 -0.35 0.90 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 35 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 336.31 15.07 5.07 5.07 Total: -1.00 -31.15 336.31 -6.07 -37.22 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -3.34 Total: -2.32 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -2.32 Total: -11.26 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 1.26 Total: -38.67 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 0.11 Total: -6.47 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.18 Total: -0.34 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.15 -6.07 -37.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434695.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.334 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds