Wall clock time and date at job start Sat Apr 11 2020 02:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46797 * 2 1 4 4 C 1.50704 * 109.46824 * 240.00395 * 2 1 3 5 5 O 1.21271 * 119.99721 * 240.00186 * 4 2 1 6 6 N 1.34773 * 119.99899 * 59.99900 * 4 2 1 7 7 C 1.39473 * 119.99565 * 175.19003 * 6 4 2 8 8 C 1.38597 * 119.57783 * 185.04898 * 7 6 4 9 9 C 1.40808 * 118.79920 * 179.77722 * 8 7 6 10 10 C 1.41537 * 121.00004 * 180.25424 * 9 8 7 11 11 H 1.08006 * 119.99918 * 203.79098 * 10 9 8 12 12 C 1.40030 * 120.00023 * 23.79284 * 10 9 8 13 13 N 1.30745 * 120.00021 * 17.16457 * 12 10 9 14 14 Si 1.86800 * 120.00185 * 197.15801 * 12 10 9 15 15 H 1.48505 * 109.47004 * 94.68227 * 14 12 10 16 16 H 1.48494 * 109.47608 * 214.68388 * 14 12 10 17 17 H 1.48503 * 109.46964 * 334.68692 * 14 12 10 18 18 C 1.41182 * 118.00310 * 0.48061 * 9 8 7 19 19 C 1.37593 * 119.01313 * 359.75210 * 18 9 8 20 20 N 1.32076 * 121.11051 * 0.02562 * 19 18 9 21 21 C 1.50693 * 109.47225 * 120.00391 * 2 1 3 22 22 C 1.38266 * 119.99776 * 59.71976 * 21 2 1 23 23 C 1.38212 * 120.02616 * 179.76602 * 22 21 2 24 24 C 1.38234 * 120.01696 * 0.51365 * 23 22 21 25 25 C 1.38328 * 119.98757 * 359.73874 * 24 23 22 26 26 Cl 1.73593 * 120.01685 * 180.02562 * 25 24 23 27 27 C 1.38200 * 119.99271 * 239.99602 * 21 2 1 28 28 H 1.08998 * 109.47751 * 59.99461 * 1 2 3 29 29 H 1.09004 * 109.47245 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46792 * 299.99729 * 1 2 3 31 31 H 0.96994 * 120.00317 * 355.18374 * 6 4 2 32 32 H 1.08000 * 120.60212 * 359.97438 * 8 7 6 33 33 H 0.96997 * 119.99985 * 180.02562 * 13 12 10 34 34 H 1.07997 * 120.49139 * 179.78403 * 18 9 8 35 35 H 1.07996 * 119.44147 * 180.02562 * 19 18 9 36 36 H 1.07998 * 119.97802 * 0.02562 * 22 21 2 37 37 H 1.08008 * 119.99022 * 180.25893 * 23 22 21 38 38 H 1.08006 * 120.00607 * 179.72384 * 24 23 22 39 39 H 1.07999 * 120.00613 * 0.02562 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.7294 -1.6964 -1.1193 6 7 1.7066 -0.2498 -2.4546 7 6 2.2520 -0.8456 -3.5916 8 6 1.9951 -0.3004 -4.8397 9 6 2.5578 -0.9124 -5.9761 10 6 2.3304 -0.3917 -7.2724 11 1 2.4194 -1.0344 -8.1358 12 6 1.9901 0.9568 -7.4354 13 7 2.2040 1.8069 -6.4653 14 14 1.2308 1.5413 -9.0389 15 1 -0.2490 1.5427 -8.9143 16 1 1.7036 2.9167 -9.3383 17 1 1.6339 0.6289 -10.1390 18 6 3.3518 -2.0640 -5.7842 19 6 3.5464 -2.5349 -4.5061 20 7 3.0042 -1.9287 -3.4655 21 6 2.0323 -0.7105 1.2303 22 6 1.6935 -2.0325 1.4519 23 6 2.1579 -2.6861 2.5777 24 6 2.9527 -2.0153 3.4883 25 6 3.2878 -0.6911 3.2699 26 17 4.2864 0.1518 4.4126 27 6 2.8269 -0.0388 2.1399 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.0930 0.4959 -2.5448 32 1 1.3772 0.5798 -4.9385 33 1 1.9679 2.7409 -6.5781 34 1 3.8000 -2.5674 -6.6280 35 1 4.1529 -3.4150 -4.3513 36 1 1.0692 -2.5557 0.7428 37 1 1.8963 -3.7201 2.7481 38 1 3.3118 -2.5250 4.3703 39 1 3.0875 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531670708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:28:38 Heat of formation + Delta-G solvation = 12.365108 kcal Electronic energy + Delta-G solvation = -24473.687861 eV Core-core repulsion = 20792.695256 eV Total energy + Delta-G solvation = -3680.992605 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.28541 -39.06289 -37.77342 -36.55460 -34.38534 -34.13199 -33.67632 -30.88560 -30.58290 -29.70808 -28.35837 -26.03157 -24.87187 -22.77884 -22.63385 -21.97411 -20.86667 -19.45123 -17.75506 -17.24817 -16.85536 -15.96001 -15.49454 -15.43857 -15.17205 -14.61323 -14.26426 -14.15696 -14.01466 -13.78151 -13.52292 -13.45839 -12.88381 -12.73514 -12.58351 -12.34157 -12.14041 -11.86825 -11.53341 -11.47977 -11.37453 -11.27112 -11.19711 -10.93743 -10.85623 -10.30668 -10.17034 -9.77503 -9.40504 -9.36403 -8.96123 -8.69741 -8.04212 -7.74857 -7.06903 -6.85440 -4.64892 1.11969 1.18909 2.01800 2.51656 2.74757 2.99006 3.02708 3.16577 3.39364 3.44981 3.76963 3.81504 4.41137 4.61658 4.69037 4.87680 4.98350 5.03662 5.15264 5.22769 5.34340 5.52466 5.61463 5.65455 5.72833 5.79299 5.93938 6.02222 6.11385 6.28976 6.46669 6.55112 6.61774 6.72648 6.78060 6.91023 7.06343 7.35557 7.42363 7.73555 7.89397 8.17705 8.38779 8.66571 8.70689 8.84925 9.65903 10.02052 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.021801 B = 0.002514 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.033568 B =11133.306420 C =11516.606114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.075 4.075 3 H 0.105 0.895 4 C 0.502 3.498 5 O -0.471 6.471 6 N -0.657 5.657 7 C 0.337 3.663 8 C -0.244 4.244 9 C 0.143 3.857 10 C -0.455 4.455 11 H 0.083 0.917 12 C 0.078 3.922 13 N -0.787 5.787 14 Si 0.911 3.089 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.260 1.260 18 C -0.285 4.285 19 C 0.119 3.881 20 N -0.555 5.555 21 C -0.048 4.048 22 C -0.077 4.077 23 C -0.109 4.109 24 C -0.113 4.113 25 C -0.037 4.037 26 Cl -0.079 7.079 27 C -0.103 4.103 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.407 0.593 32 H 0.127 0.873 33 H 0.282 0.718 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.497 0.349 15.351 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.097 4.097 3 H 0.123 0.877 4 C 0.286 3.714 5 O -0.340 6.340 6 N -0.303 5.303 7 C 0.113 3.887 8 C -0.270 4.270 9 C 0.135 3.865 10 C -0.486 4.486 11 H 0.101 0.899 12 C -0.141 4.141 13 N -0.412 5.412 14 Si 0.735 3.265 15 H -0.192 1.192 16 H -0.202 1.202 17 H -0.184 1.184 18 C -0.309 4.309 19 C -0.035 4.035 20 N -0.274 5.274 21 C -0.048 4.048 22 C -0.095 4.095 23 C -0.127 4.127 24 C -0.132 4.132 25 C -0.064 4.064 26 Cl -0.050 7.050 27 C -0.122 4.122 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.242 0.758 32 H 0.145 0.855 33 H 0.093 0.907 34 H 0.120 0.880 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.747 -0.377 16.521 16.945 hybrid contribution -0.524 1.295 -1.605 2.128 sum -4.271 0.918 14.916 15.543 Atomic orbital electron populations 1.21808 0.91923 1.03208 1.02946 1.20373 0.97796 1.00436 0.91059 0.87717 1.20363 0.81737 0.85402 0.83921 1.90803 1.34148 1.23545 1.85513 1.43414 1.47004 1.35353 1.04498 1.18177 0.94320 0.91594 0.84639 1.21524 1.09455 1.05796 0.90204 1.17565 0.86588 0.89327 0.93019 1.19596 1.41279 0.94487 0.93266 0.89931 1.25962 0.92900 0.96690 0.98536 1.69785 1.33850 1.04274 1.33272 0.86245 0.79966 0.78493 0.81751 1.19221 1.20175 1.18425 1.21896 1.08276 1.03845 0.96854 1.21754 0.96331 0.97165 0.88241 1.67213 1.15981 1.10507 1.33682 1.19260 0.97006 0.94329 0.94250 1.21069 0.98508 0.93662 0.96241 1.21069 0.97595 0.99985 0.94039 1.21006 0.99111 0.92627 1.00437 1.20787 0.98824 0.93583 0.93178 1.98357 1.68526 1.78031 1.60065 1.20883 0.97864 1.00476 0.92958 0.91375 0.91688 0.91280 0.75824 0.85527 0.90707 0.88004 0.85937 0.85459 0.85135 0.85235 0.85078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.90 37.16 0.33 -1.05 16 2 C -0.07 -0.94 2.91 -92.92 -0.27 -1.21 16 3 H 0.10 1.13 7.88 -51.93 -0.41 0.72 16 4 C 0.50 8.96 6.99 -10.99 -0.08 8.89 16 5 O -0.47 -10.36 13.38 5.57 0.07 -10.28 16 6 N -0.66 -12.31 5.31 -11.49 -0.06 -12.37 16 7 C 0.34 7.98 7.42 -154.70 -1.15 6.84 16 8 C -0.24 -6.06 8.62 -38.48 -0.33 -6.40 16 9 C 0.14 3.72 5.60 -106.55 -0.60 3.12 16 10 C -0.46 -11.53 9.12 -37.65 -0.34 -11.87 16 11 H 0.08 2.01 7.90 -52.48 -0.41 1.59 16 12 C 0.08 1.86 5.19 -17.34 -0.09 1.77 16 13 N -0.79 -19.00 10.94 55.55 0.61 -18.39 16 14 Si 0.91 17.57 29.59 -169.99 -5.03 12.54 16 15 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 16 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 17 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 18 C -0.28 -6.94 9.90 -38.70 -0.38 -7.32 16 19 C 0.12 2.84 11.15 -17.68 -0.20 2.65 16 20 N -0.55 -13.94 7.85 -12.52 -0.10 -14.04 16 21 C -0.05 -0.62 4.39 -104.63 -0.46 -1.08 16 22 C -0.08 -0.99 7.94 -39.58 -0.31 -1.30 16 23 C -0.11 -1.23 10.04 -39.59 -0.40 -1.62 16 24 C -0.11 -1.25 9.83 -39.55 -0.39 -1.64 16 25 C -0.04 -0.44 6.32 -39.50 -0.25 -0.69 16 26 Cl -0.08 -0.86 28.96 -51.86 -1.50 -2.36 16 27 C -0.10 -1.26 9.46 -39.54 -0.37 -1.64 16 28 H 0.07 0.60 7.46 -51.93 -0.39 0.21 16 29 H 0.06 0.66 7.37 -51.93 -0.38 0.28 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.41 6.19 7.98 -40.82 -0.33 5.86 16 32 H 0.13 3.10 6.21 -52.49 -0.33 2.78 16 33 H 0.28 6.14 8.29 -40.82 -0.34 5.80 16 34 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 35 H 0.12 2.56 8.06 -52.49 -0.42 2.14 16 36 H 0.13 1.67 7.51 -52.49 -0.39 1.27 16 37 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 38 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 39 H 0.13 1.41 7.95 -52.49 -0.42 0.99 16 LS Contribution 350.07 15.07 5.28 5.28 Total: -1.00 -30.85 350.07 -10.33 -41.18 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -4.31 Total: 11.00 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -5.29 Total: -12.57 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.45 Total: -44.79 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.07 Total: -10.28 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.85 -10.33 -41.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.546 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds