Wall clock time and date at job start Sat Apr 11 2020 02:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46797 * 2 1 4 4 C 1.50704 * 109.46824 * 240.00395 * 2 1 3 5 5 O 1.21271 * 119.99721 * 240.00186 * 4 2 1 6 6 N 1.34773 * 119.99899 * 59.99900 * 4 2 1 7 7 C 1.39473 * 119.99565 * 175.19003 * 6 4 2 8 8 C 1.38597 * 119.57783 * 185.04898 * 7 6 4 9 9 C 1.40808 * 118.79920 * 179.77722 * 8 7 6 10 10 C 1.41537 * 121.00004 * 180.25424 * 9 8 7 11 11 H 1.08006 * 119.99918 * 203.79098 * 10 9 8 12 12 C 1.40030 * 120.00023 * 23.79284 * 10 9 8 13 13 N 1.30745 * 120.00021 * 17.16457 * 12 10 9 14 14 Si 1.86800 * 120.00185 * 197.15801 * 12 10 9 15 15 H 1.48505 * 109.47004 * 94.68227 * 14 12 10 16 16 H 1.48494 * 109.47608 * 214.68388 * 14 12 10 17 17 H 1.48503 * 109.46964 * 334.68692 * 14 12 10 18 18 C 1.41182 * 118.00310 * 0.48061 * 9 8 7 19 19 C 1.37593 * 119.01313 * 359.75210 * 18 9 8 20 20 N 1.32076 * 121.11051 * 0.02562 * 19 18 9 21 21 C 1.50693 * 109.47225 * 120.00391 * 2 1 3 22 22 C 1.38266 * 119.99776 * 59.71976 * 21 2 1 23 23 C 1.38212 * 120.02616 * 179.76602 * 22 21 2 24 24 C 1.38234 * 120.01696 * 0.51365 * 23 22 21 25 25 C 1.38328 * 119.98757 * 359.73874 * 24 23 22 26 26 Cl 1.73593 * 120.01685 * 180.02562 * 25 24 23 27 27 C 1.38200 * 119.99271 * 239.99602 * 21 2 1 28 28 H 1.08998 * 109.47751 * 59.99461 * 1 2 3 29 29 H 1.09004 * 109.47245 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46792 * 299.99729 * 1 2 3 31 31 H 0.96994 * 120.00317 * 355.18374 * 6 4 2 32 32 H 1.08000 * 120.60212 * 359.97438 * 8 7 6 33 33 H 0.96997 * 119.99985 * 180.02562 * 13 12 10 34 34 H 1.07997 * 120.49139 * 179.78403 * 18 9 8 35 35 H 1.07996 * 119.44147 * 180.02562 * 19 18 9 36 36 H 1.07998 * 119.97802 * 0.02562 * 22 21 2 37 37 H 1.08008 * 119.99022 * 180.25893 * 23 22 21 38 38 H 1.08006 * 120.00607 * 179.72384 * 24 23 22 39 39 H 1.07999 * 120.00613 * 0.02562 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.7294 -1.6964 -1.1193 6 7 1.7066 -0.2498 -2.4546 7 6 2.2520 -0.8456 -3.5916 8 6 1.9951 -0.3004 -4.8397 9 6 2.5578 -0.9124 -5.9761 10 6 2.3304 -0.3917 -7.2724 11 1 2.4194 -1.0344 -8.1358 12 6 1.9901 0.9568 -7.4354 13 7 2.2040 1.8069 -6.4653 14 14 1.2308 1.5413 -9.0389 15 1 -0.2490 1.5427 -8.9143 16 1 1.7036 2.9167 -9.3383 17 1 1.6339 0.6289 -10.1390 18 6 3.3518 -2.0640 -5.7842 19 6 3.5464 -2.5349 -4.5061 20 7 3.0042 -1.9287 -3.4655 21 6 2.0323 -0.7105 1.2303 22 6 1.6935 -2.0325 1.4519 23 6 2.1579 -2.6861 2.5777 24 6 2.9527 -2.0153 3.4883 25 6 3.2878 -0.6911 3.2699 26 17 4.2864 0.1518 4.4126 27 6 2.8269 -0.0388 2.1399 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.0930 0.4959 -2.5448 32 1 1.3772 0.5798 -4.9385 33 1 1.9679 2.7409 -6.5781 34 1 3.8000 -2.5674 -6.6280 35 1 4.1529 -3.4150 -4.3513 36 1 1.0692 -2.5557 0.7428 37 1 1.8963 -3.7201 2.7481 38 1 3.3118 -2.5250 4.3703 39 1 3.0875 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531670708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:28:37 Heat of formation + Delta-G solvation = -3.092313 kcal Electronic energy + Delta-G solvation = -24474.358145 eV Core-core repulsion = 20792.695256 eV Total energy + Delta-G solvation = -3681.662889 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.59004 -40.38706 -39.31278 -37.46071 -36.12939 -35.54120 -35.01170 -32.45764 -31.78105 -30.89168 -29.84121 -27.91024 -25.89766 -24.01214 -23.79789 -23.65771 -22.30453 -20.88005 -19.46940 -18.58742 -17.90761 -17.45295 -16.99829 -16.61897 -16.36799 -16.07597 -15.90014 -15.74991 -15.28004 -14.96498 -14.66611 -14.43227 -14.38258 -14.31753 -14.15234 -13.40050 -13.17887 -13.16340 -12.93436 -12.77782 -12.66177 -12.43348 -12.25459 -12.17962 -12.03506 -11.90779 -11.72517 -11.46990 -11.14242 -10.87342 -9.95525 -9.90508 -9.61776 -9.56130 -8.86220 -8.64953 -6.56385 0.19179 0.28374 0.75065 0.99657 1.13034 1.41626 1.54662 1.55283 1.89378 2.13255 2.20275 2.70885 2.80070 3.44773 3.63083 3.74890 3.89374 4.06343 4.17035 4.18291 4.25418 4.32177 4.47804 4.68973 4.76190 4.80000 4.86034 4.88852 4.92695 4.97016 5.08800 5.19860 5.22130 5.24102 5.38255 5.48358 5.54348 5.65099 5.82830 5.90678 6.15106 6.47713 6.61313 6.79524 6.82982 7.32490 7.84624 8.25636 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.021801 B = 0.002514 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.033568 B =11133.306420 C =11516.606114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.061 4.061 3 H 0.127 0.873 4 C 0.500 3.500 5 O -0.515 6.515 6 N -0.650 5.650 7 C 0.336 3.664 8 C -0.262 4.262 9 C 0.114 3.886 10 C -0.485 4.485 11 H 0.082 0.918 12 C 0.041 3.959 13 N -0.809 5.809 14 Si 0.987 3.013 15 H -0.259 1.259 16 H -0.267 1.267 17 H -0.260 1.260 18 C -0.301 4.301 19 C 0.113 3.887 20 N -0.578 5.578 21 C -0.063 4.063 22 C -0.093 4.093 23 C -0.111 4.111 24 C -0.113 4.113 25 C -0.047 4.047 26 Cl -0.071 7.071 27 C -0.111 4.111 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.422 0.578 32 H 0.125 0.875 33 H 0.293 0.707 34 H 0.114 0.886 35 H 0.147 0.853 36 H 0.118 0.882 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.308 1.443 15.964 16.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.082 4.082 3 H 0.145 0.855 4 C 0.286 3.714 5 O -0.387 6.387 6 N -0.298 5.298 7 C 0.110 3.890 8 C -0.287 4.287 9 C 0.106 3.894 10 C -0.515 4.515 11 H 0.101 0.899 12 C -0.177 4.177 13 N -0.434 5.434 14 Si 0.807 3.193 15 H -0.184 1.184 16 H -0.191 1.191 17 H -0.184 1.184 18 C -0.325 4.325 19 C -0.040 4.040 20 N -0.298 5.298 21 C -0.063 4.063 22 C -0.111 4.111 23 C -0.129 4.129 24 C -0.132 4.132 25 C -0.074 4.074 26 Cl -0.043 7.043 27 C -0.129 4.129 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.260 0.740 32 H 0.142 0.858 33 H 0.104 0.896 34 H 0.132 0.868 35 H 0.164 0.836 36 H 0.136 0.864 37 H 0.170 0.830 38 H 0.169 0.831 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.575 0.739 17.165 17.779 hybrid contribution -0.218 0.941 -1.713 1.967 sum -4.793 1.680 15.452 16.265 Atomic orbital electron populations 1.21836 0.89662 1.03318 1.04684 1.20356 0.99505 1.00512 0.87870 0.85469 1.21330 0.80512 0.84855 0.84681 1.90773 1.36067 1.25648 1.86166 1.43462 1.46977 1.35529 1.03809 1.18437 0.93547 0.91083 0.85953 1.21515 1.10330 1.06194 0.90668 1.18000 0.87240 0.90248 0.93943 1.19866 1.42783 0.95705 0.93144 0.89939 1.26804 0.92556 0.96098 1.02196 1.69808 1.33473 1.05049 1.35102 0.85118 0.79113 0.78080 0.76988 1.18388 1.19146 1.18367 1.22070 1.08771 1.04037 0.97584 1.22180 0.96135 0.97704 0.88010 1.67348 1.16948 1.11364 1.34159 1.19357 0.97767 0.94611 0.94614 1.21160 0.99102 0.94012 0.96852 1.21343 0.97124 1.01008 0.93416 1.21292 0.98464 0.92446 1.00954 1.20962 0.98972 0.94083 0.93353 1.98358 1.68281 1.77924 1.59695 1.21050 0.97635 1.01188 0.93038 0.90322 0.92447 0.88823 0.74000 0.85754 0.89593 0.86839 0.83551 0.86421 0.83007 0.83117 0.83851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.90 71.98 0.64 -1.80 16 2 C -0.06 -1.45 2.91 -12.29 -0.04 -1.49 16 3 H 0.13 2.45 7.88 -2.39 -0.02 2.43 16 4 C 0.50 17.75 6.99 87.66 0.61 18.36 16 5 O -0.51 -22.94 13.38 -3.00 -0.04 -22.98 16 6 N -0.65 -24.37 5.31 -308.66 -1.64 -26.01 16 7 C 0.34 16.16 7.42 132.75 0.98 17.15 16 8 C -0.26 -13.27 8.62 22.98 0.20 -13.07 16 9 C 0.11 6.05 5.60 -21.11 -0.12 5.93 16 10 C -0.48 -24.89 9.12 23.52 0.21 -24.67 16 11 H 0.08 4.08 7.90 -2.91 -0.02 4.06 16 12 C 0.04 1.93 5.19 85.29 0.44 2.37 16 13 N -0.81 -38.92 10.94 21.84 0.24 -38.68 16 14 Si 0.99 35.28 29.59 68.60 2.03 37.31 16 15 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 16 H -0.27 -9.07 7.11 99.48 0.71 -8.37 16 17 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 18 C -0.30 -14.98 9.90 22.84 0.23 -14.76 16 19 C 0.11 5.50 11.15 84.50 0.94 6.44 16 20 N -0.58 -29.58 7.85 -193.54 -1.52 -31.10 16 21 C -0.06 -1.57 4.39 -19.87 -0.09 -1.66 16 22 C -0.09 -2.36 7.94 22.27 0.18 -2.18 16 23 C -0.11 -2.37 10.04 22.26 0.22 -2.14 16 24 C -0.11 -2.31 9.83 22.29 0.22 -2.09 16 25 C -0.05 -1.05 6.32 22.32 0.14 -0.91 16 26 Cl -0.07 -1.44 28.96 -2.72 -0.08 -1.52 16 27 C -0.11 -2.55 9.46 22.29 0.21 -2.34 16 28 H 0.08 1.22 7.46 -2.39 -0.02 1.20 16 29 H 0.06 1.11 7.37 -2.38 -0.02 1.10 16 30 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.42 12.62 7.98 -92.71 -0.74 11.88 16 32 H 0.12 6.22 6.21 -2.91 -0.02 6.20 16 33 H 0.29 12.52 8.29 -92.71 -0.77 11.75 16 34 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 35 H 0.15 6.15 8.06 -2.91 -0.02 6.13 16 36 H 0.12 3.13 7.51 -2.91 -0.02 3.11 16 37 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 38 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 39 H 0.14 2.83 7.95 -2.91 -0.02 2.81 16 Total: -1.00 -67.44 350.07 4.34 -63.10 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: 0.36 Total: 36.73 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: 4.99 Total: -16.85 kcal Atomic # 7 Polarization: -92.87 SS G_CDS: -2.92 Total: -95.79 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.04 Total: -22.98 kcal Atomic # 14 Polarization: 35.28 SS G_CDS: 2.03 Total: 37.31 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.52 kcal Total: -67.44 4.34 -63.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.005 kcal (2) G-P(sol) polarization free energy of solvation -67.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds