Wall clock time and date at job start Sat Apr 11 2020 02:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00154 * 2 1 4 4 H 1.48500 * 109.47169 * 269.99972 * 3 2 1 5 5 H 1.48500 * 109.46754 * 30.00440 * 3 2 1 6 6 H 1.48503 * 109.46890 * 150.00070 * 3 2 1 7 7 C 1.37879 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00480 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99655 * 359.97438 * 7 2 1 10 10 O 1.42896 * 110.64133 * 59.30014 * 9 7 2 11 11 C 1.55157 * 110.71955 * 182.44310 * 9 7 2 12 12 C 1.55388 * 101.36743 * 153.94563 * 11 9 7 13 13 N 1.47429 * 104.87369 * 323.01827 * 12 11 9 14 14 C 1.34774 * 125.65059 * 204.16837 * 13 12 11 15 15 O 1.21547 * 120.00255 * 174.49927 * 14 13 12 16 16 C 1.47845 * 119.99894 * 354.49466 * 14 13 12 17 17 C 1.40027 * 120.55732 * 320.16879 * 16 14 13 18 18 C 1.38359 * 118.28463 * 179.97438 * 17 16 14 19 19 C 1.38348 * 119.30407 * 359.97438 * 18 17 16 20 20 N 1.31918 * 121.08171 * 0.02692 * 19 18 17 21 21 C 1.31703 * 121.88270 * 359.67299 * 20 19 18 22 22 C 1.50692 * 119.72193 * 180.29386 * 21 20 19 23 23 F 1.39901 * 109.47334 * 248.90031 * 22 21 20 24 24 F 1.39905 * 109.47344 * 8.89685 * 22 21 20 25 25 F 1.39892 * 109.47240 * 128.89768 * 22 21 20 26 26 C 1.47028 * 108.70275 * 24.13040 * 13 12 11 27 27 H 0.96996 * 120.00003 * 0.02562 * 1 2 3 28 28 H 0.96701 * 114.00156 * 300.69920 * 10 9 7 29 29 H 1.08994 * 111.00215 * 272.11521 * 11 9 7 30 30 H 1.09002 * 111.00603 * 35.96664 * 11 9 7 31 31 H 1.08993 * 110.34716 * 204.16977 * 12 11 9 32 32 H 1.09003 * 110.44466 * 81.91263 * 12 11 9 33 33 H 1.07996 * 120.85796 * 359.97438 * 17 16 14 34 34 H 1.08003 * 120.34110 * 180.02562 * 18 17 16 35 35 H 1.08006 * 119.45977 * 180.02562 * 19 18 17 36 36 H 1.09000 * 109.87874 * 239.52438 * 26 13 12 37 37 H 1.08992 * 110.01036 * 118.43376 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.4074 -2.5938 -1.1500 11 6 2.2322 -3.6995 0.0607 12 6 1.3424 -4.7891 0.7209 13 7 0.5237 -4.0620 1.7080 14 6 -0.0421 -4.5987 2.8072 15 8 -0.6148 -3.8842 3.6065 16 6 0.0337 -6.0567 3.0407 17 6 -0.1147 -6.9564 1.9781 18 6 -0.0348 -8.3107 2.2497 19 6 0.1874 -8.7286 3.5497 20 7 0.3233 -7.8577 4.5312 21 6 0.2611 -6.5589 4.3223 22 6 0.4297 -5.6073 5.4785 23 9 -0.7884 -4.9710 5.7403 24 9 0.8374 -6.3184 6.6123 25 9 1.3967 -4.6490 5.1566 26 6 0.4274 -2.6541 1.2953 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2496 -1.8872 -1.2150 29 1 2.5454 -3.9994 -0.9393 30 1 3.0947 -3.4677 0.6855 31 1 1.9626 -5.5348 1.2181 32 1 0.7047 -5.2633 -0.0252 33 1 -0.2870 -6.6024 0.9724 34 1 -0.1440 -9.0340 1.4551 35 1 0.2506 -9.7852 3.7646 36 1 0.8370 -2.0107 2.0741 37 1 -0.6134 -2.3911 1.1068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:29:16 Heat of formation + Delta-G solvation = -205.058510 kcal Electronic energy + Delta-G solvation = -29446.415111 eV Core-core repulsion = 24773.428406 eV Total energy + Delta-G solvation = -4672.986705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.24606 -48.79911 -48.69231 -41.99260 -40.56740 -38.95606 -36.23764 -34.21595 -34.11013 -33.40331 -31.71748 -29.68975 -28.10729 -27.08125 -25.77050 -24.04519 -23.77019 -21.56130 -21.02162 -19.70842 -19.62192 -19.58649 -19.17548 -18.44875 -17.70099 -17.41225 -16.77083 -16.58520 -16.43992 -16.05174 -15.70589 -15.52217 -15.15791 -15.09693 -14.93329 -14.88932 -14.85497 -14.79321 -14.72316 -14.55973 -14.03177 -13.83771 -13.50284 -13.37877 -13.11964 -12.87483 -12.55377 -12.34879 -12.30437 -12.13379 -11.46387 -11.25153 -11.14842 -10.88502 -10.65401 -10.58615 -10.30308 -9.69633 -8.29459 -6.44450 -0.73236 -0.17780 1.34518 1.39352 1.42513 1.47996 1.51117 1.82206 2.33224 2.36541 2.39403 2.77206 2.97821 3.17682 3.24277 3.55364 3.65788 3.71234 3.77420 3.98661 4.06271 4.18104 4.26577 4.37236 4.51663 4.63429 4.75217 4.87629 4.98187 5.07969 5.15925 5.32966 5.34407 5.46847 5.72655 6.02187 6.39220 6.45982 6.62498 6.89299 7.26714 7.34650 8.76609 Molecular weight = 330.10amu Principal moments of inertia in cm(-1) A = 0.017965 B = 0.004057 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.209682 B = 6900.527097 C = 7810.027315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.028 3.972 3 Si 0.959 3.041 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.560 4.560 8 H 0.066 0.934 9 C 0.237 3.763 10 O -0.584 6.584 11 C -0.113 4.113 12 C 0.101 3.899 13 N -0.601 5.601 14 C 0.549 3.451 15 O -0.570 6.570 16 C -0.138 4.138 17 C -0.047 4.047 18 C -0.110 4.110 19 C 0.123 3.877 20 N -0.466 5.466 21 C 0.063 3.937 22 C 0.513 3.487 23 F -0.169 7.169 24 F -0.166 7.166 25 F -0.182 7.182 26 C 0.120 3.880 27 H 0.271 0.729 28 H 0.377 0.623 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.171 0.829 34 H 0.209 0.791 35 H 0.221 0.779 36 H 0.031 0.969 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.386 -20.544 1.713 20.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.173 4.173 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.598 4.598 8 H 0.084 0.916 9 C 0.196 3.804 10 O -0.392 6.392 11 C -0.150 4.150 12 C -0.020 4.020 13 N -0.332 5.332 14 C 0.337 3.663 15 O -0.451 6.451 16 C -0.144 4.144 17 C -0.072 4.072 18 C -0.129 4.129 19 C -0.034 4.034 20 N -0.175 5.175 21 C -0.077 4.077 22 C 0.458 3.542 23 F -0.151 7.151 24 F -0.147 7.147 25 F -0.163 7.163 26 C -0.003 4.003 27 H 0.080 0.920 28 H 0.227 0.773 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.189 0.811 34 H 0.226 0.774 35 H 0.237 0.763 36 H 0.050 0.950 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.421 -20.871 2.956 21.127 hybrid contribution -0.393 2.803 -0.084 2.832 sum 1.027 -18.068 2.872 18.324 Atomic orbital electron populations 1.69719 1.07009 1.28522 1.50212 1.25760 0.95776 1.02667 0.93061 0.85527 0.78644 0.78897 0.78442 1.19511 1.21260 1.19435 1.21869 0.93989 0.91511 1.52396 0.91557 1.19642 0.86629 0.93478 0.80630 1.86063 1.51591 1.54578 1.46969 1.22842 0.96865 0.93531 1.01802 1.22786 0.93312 0.95127 0.90758 1.48675 1.49743 1.11715 1.23108 1.18315 0.79376 0.87850 0.80726 1.90840 1.45711 1.62999 1.45503 1.20562 1.04649 0.93807 0.95343 1.22313 0.92682 0.93518 0.98727 1.22939 0.94756 0.95483 0.99748 1.23947 0.90821 1.00873 0.87772 1.67304 1.12119 0.99884 1.38159 1.20697 1.03805 0.92633 0.90523 1.18092 0.74371 0.79341 0.82420 1.93254 1.44352 1.83080 1.94380 1.93192 1.90414 1.77890 1.53215 1.93210 1.64208 1.66204 1.92679 1.22622 0.99789 0.79273 0.98588 0.92005 0.77260 0.88299 0.90346 0.88523 0.88753 0.81141 0.77428 0.76270 0.95047 0.94362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.14 10.96 21.45 0.23 -48.90 16 2 C 0.03 1.47 5.27 84.66 0.45 1.92 16 3 Si 0.96 41.94 29.54 68.60 2.03 43.96 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.56 -28.85 8.11 25.60 0.21 -28.65 16 8 H 0.07 3.34 7.77 -2.91 -0.02 3.32 16 9 C 0.24 10.98 0.85 -10.35 -0.01 10.97 16 10 O -0.58 -27.76 13.07 -148.98 -1.95 -29.71 16 11 C -0.11 -4.01 6.26 32.15 0.20 -3.81 16 12 C 0.10 2.98 5.31 87.02 0.46 3.44 16 13 N -0.60 -23.58 3.33 -814.23 -2.71 -26.28 16 14 C 0.55 21.79 6.34 86.79 0.55 22.34 16 15 O -0.57 -27.59 13.84 -3.86 -0.05 -27.65 16 16 C -0.14 -4.04 5.29 -19.99 -0.11 -4.14 16 17 C -0.05 -0.84 8.39 22.73 0.19 -0.65 16 18 C -0.11 -1.01 10.10 22.32 0.23 -0.78 16 19 C 0.12 1.50 11.17 84.71 0.95 2.44 16 20 N -0.47 -10.91 9.75 -182.85 -1.78 -12.69 16 21 C 0.06 1.88 6.30 42.88 0.27 2.15 16 22 C 0.51 18.17 2.79 71.23 0.20 18.37 16 23 F -0.17 -6.71 15.16 44.97 0.68 -6.03 16 24 F -0.17 -5.36 16.87 44.97 0.76 -4.61 16 25 F -0.18 -7.11 15.49 44.97 0.70 -6.41 16 26 C 0.12 5.83 5.38 86.73 0.47 6.30 16 27 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 28 H 0.38 19.08 7.23 -74.06 -0.54 18.54 16 29 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.08 2.78 8.04 -2.39 -0.02 2.76 16 31 H 0.10 2.22 7.40 -2.39 -0.02 2.20 16 32 H 0.09 2.32 7.04 -2.39 -0.02 2.30 16 33 H 0.17 2.54 6.21 -2.91 -0.02 2.52 16 34 H 0.21 -0.26 8.06 -2.91 -0.02 -0.28 16 35 H 0.22 0.53 8.06 -2.91 -0.02 0.51 16 36 H 0.03 1.73 7.82 -2.39 -0.02 1.71 16 37 H 0.04 2.04 7.99 -2.39 -0.02 2.03 16 Total: -1.00 -72.49 322.96 2.57 -69.92 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.62 Total: 18.50 kcal Atomic # 6 Polarization: 25.85 SS G_CDS: 4.05 Total: 29.90 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -4.26 Total: -87.88 kcal Atomic # 8 Polarization: -55.36 SS G_CDS: -2.00 Total: -57.36 kcal Atomic # 9 Polarization: -19.19 SS G_CDS: 2.14 Total: -17.05 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -72.49 2.57 -69.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.139 kcal (2) G-P(sol) polarization free energy of solvation -72.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds