Wall clock time and date at job start Sat Apr 11 2020 02:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34896 * 117.00228 * 2 1 4 4 O 1.21618 * 120.00200 * 0.02562 * 3 2 1 5 5 C 1.46470 * 119.99759 * 179.97438 * 3 2 1 6 6 O 1.34942 * 125.99657 * 359.96892 * 5 3 2 7 7 C 1.33907 * 109.37905 * 180.02562 * 6 5 3 8 8 C 1.35174 * 108.78167 * 359.74492 * 7 6 5 9 9 C 1.36640 * 125.99278 * 180.02562 * 5 3 2 10 10 C 1.50697 * 126.64946 * 359.94548 * 9 5 3 11 11 O 1.45201 * 109.46944 * 179.97438 * 10 9 5 12 12 C 1.34804 * 116.99925 * 180.02562 * 11 10 9 13 13 O 1.21526 * 120.00158 * 359.97438 * 12 11 10 14 14 C 1.47288 * 120.00213 * 180.02562 * 12 11 10 15 15 C 1.39296 * 120.28603 * 354.83939 * 14 12 11 16 16 C 1.38205 * 120.08627 * 180.27692 * 15 14 12 17 17 C 1.38842 * 120.68093 * 359.73704 * 16 15 14 18 18 C 1.37598 * 120.58324 * 0.02562 * 17 16 15 19 19 C 1.40703 * 119.88704 * 359.97438 * 18 17 16 20 20 C 1.40861 * 120.33435 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00400 * 145.74198 * 20 19 18 22 22 C 1.40300 * 119.99625 * 325.73972 * 20 19 18 23 23 N 1.30617 * 119.99753 * 339.67870 * 22 20 19 24 24 Si 1.86800 * 119.99956 * 159.68446 * 22 20 19 25 25 H 1.48497 * 109.46905 * 180.02562 * 24 22 20 26 26 H 1.48502 * 109.47051 * 299.99710 * 24 22 20 27 27 H 1.48494 * 109.47276 * 59.99768 * 24 22 20 28 28 H 1.09001 * 109.47576 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46745 * 299.99572 * 1 2 3 30 30 H 1.09001 * 109.46969 * 59.99280 * 1 2 3 31 31 H 1.07997 * 125.60864 * 179.97438 * 7 6 5 32 32 H 1.07999 * 126.43555 * 180.28558 * 8 7 6 33 33 H 1.08999 * 109.46912 * 60.00301 * 10 9 5 34 34 H 1.09000 * 109.47278 * 299.99814 * 10 9 5 35 35 H 1.08001 * 119.95608 * 0.02562 * 15 14 12 36 36 H 1.07997 * 119.65882 * 179.75950 * 16 15 14 37 37 H 1.07994 * 119.70815 * 180.02562 * 17 16 15 38 38 H 1.07997 * 120.05431 * 180.02562 * 18 17 16 39 39 H 0.96992 * 120.00369 * 355.30895 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4022 2.2219 0.0005 5 6 3.5272 1.2784 0.0006 6 8 4.3762 0.2296 0.0017 7 6 5.6376 0.6791 0.0025 8 6 5.6180 2.0307 -0.0039 9 6 4.2713 2.4244 0.0011 10 6 3.7472 3.8373 0.0001 11 8 4.8624 4.7672 0.0018 12 6 4.5632 6.0816 0.0017 13 8 3.4021 6.4405 -0.0002 14 6 5.6434 7.0828 0.0028 15 6 6.9729 6.6817 0.1121 16 6 7.9829 7.6251 0.1184 17 6 7.6895 8.9779 0.0110 18 6 6.3863 9.4047 -0.1032 19 6 5.3391 8.4650 -0.1122 20 6 4.0016 8.8915 -0.2282 21 1 3.2864 8.2863 -0.7654 22 6 3.5986 10.1026 0.3543 23 7 4.3088 10.6344 1.3129 24 14 2.0462 10.9542 -0.2408 25 1 1.8425 12.2071 0.5298 26 1 2.1812 11.2777 -1.6839 27 1 0.8811 10.0552 -0.0420 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 6.5247 0.0631 0.0038 32 1 6.4775 2.6846 -0.0093 33 1 3.1381 3.9995 0.8894 34 1 3.1401 3.9991 -0.8906 35 1 7.2145 5.6324 0.1961 36 1 9.0110 7.3067 0.2074 37 1 8.4911 9.7015 0.0173 38 1 6.1679 10.4590 -0.1866 39 1 5.0762 10.1597 1.6686 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791320521.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:28:31 Heat of formation + Delta-G solvation = -134.309048 kcal Electronic energy + Delta-G solvation = -27073.388761 eV Core-core repulsion = 22913.033972 eV Total energy + Delta-G solvation = -4160.354789 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.103 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.97012 -40.36793 -39.46118 -37.55848 -36.79896 -35.56761 -34.05064 -33.56292 -30.91070 -30.23361 -29.49297 -28.28481 -26.89541 -25.32889 -23.56922 -22.85719 -21.62982 -21.05484 -20.27572 -19.73819 -18.57795 -18.02403 -17.24256 -17.06809 -16.63492 -16.39743 -16.02283 -15.53745 -15.46745 -14.78398 -14.26524 -14.17066 -13.97382 -13.51540 -13.48039 -13.29222 -13.01325 -12.91311 -12.66913 -12.43390 -12.36209 -12.00882 -11.65859 -11.22338 -11.09582 -11.01430 -11.00807 -10.76852 -10.43975 -10.40340 -10.24770 -9.78503 -9.70840 -9.15538 -8.93489 -8.91501 -7.89042 -7.71054 -7.28935 -4.59941 0.59648 2.06499 2.06692 2.09312 2.63173 2.69312 2.83658 3.16299 3.26322 3.32597 3.36856 3.76536 3.97568 4.41905 4.52232 4.59620 4.77478 4.83728 4.93305 5.22111 5.23732 5.33579 5.46254 5.57872 5.59472 5.69470 5.95510 5.96691 6.04277 6.09636 6.17734 6.42652 6.60162 6.68893 6.89086 7.13857 7.27804 7.41206 7.43554 7.53511 7.68592 7.78427 8.02756 8.11173 8.58382 8.70838 8.98377 9.92267 Molecular weight = 330.10amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.003282 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.868910 B = 8528.038490 C =10485.962460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.350 6.350 3 C 0.549 3.451 4 O -0.477 6.477 5 C -0.073 4.073 6 O -0.150 6.150 7 C 0.005 3.995 8 C -0.201 4.201 9 C -0.061 4.061 10 C 0.133 3.867 11 O -0.367 6.367 12 C 0.504 3.496 13 O -0.509 6.509 14 C -0.253 4.253 15 C -0.022 4.022 16 C -0.262 4.262 17 C -0.070 4.070 18 C -0.200 4.200 19 C 0.121 3.879 20 C -0.464 4.464 21 H 0.105 0.895 22 C 0.033 3.967 23 N -0.784 5.784 24 Si 1.070 2.930 25 H -0.273 1.273 26 H -0.273 1.273 27 H -0.271 1.271 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.217 0.783 32 H 0.169 0.831 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.507 -17.684 -1.868 17.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.267 6.267 3 C 0.394 3.606 4 O -0.365 6.365 5 C -0.123 4.123 6 O -0.045 6.045 7 C -0.065 4.065 8 C -0.220 4.220 9 C -0.063 4.063 10 C 0.059 3.941 11 O -0.287 6.287 12 C 0.355 3.645 13 O -0.399 6.399 14 C -0.256 4.256 15 C -0.041 4.041 16 C -0.281 4.281 17 C -0.089 4.089 18 C -0.219 4.219 19 C 0.117 3.883 20 C -0.490 4.490 21 H 0.123 0.877 22 C -0.190 4.190 23 N -0.406 5.406 24 Si 0.893 3.107 25 H -0.197 1.197 26 H -0.198 1.198 27 H -0.196 1.196 28 H 0.123 0.877 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.234 0.766 32 H 0.186 0.814 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.127 0.873 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.141 -16.227 -1.609 16.446 hybrid contribution 1.006 -1.350 -0.122 1.688 sum -1.135 -17.577 -1.731 17.698 Atomic orbital electron populations 1.23365 0.75306 1.03995 1.03090 1.86638 1.23995 1.31730 1.84326 1.19135 0.85441 0.82250 0.73801 1.91019 1.64199 1.35663 1.45668 1.20128 0.87804 0.85395 1.18995 1.84141 1.15854 1.33888 1.70612 1.24566 0.85213 0.95260 1.01470 1.21797 0.97425 0.94925 1.07816 1.20435 0.93605 0.94183 0.98086 1.20962 0.87406 0.81960 1.03808 1.86513 1.37596 1.18140 1.86420 1.21329 0.89569 0.79817 0.73824 1.90768 1.21742 1.79905 1.47523 1.18636 0.90204 0.91584 1.25170 1.20880 0.92067 0.97707 0.93432 1.20321 0.97192 0.93110 1.17448 1.20804 0.95774 0.95144 0.97203 1.21199 0.92021 0.98778 1.09890 1.17455 0.93743 0.89236 0.87884 1.21223 0.95909 1.04751 1.27159 0.87744 1.27324 1.03962 0.94214 0.93520 1.70388 1.14464 1.39128 1.16641 0.83561 0.73712 0.76470 0.77002 1.19744 1.19784 1.19630 0.87741 0.91435 0.91446 0.76625 0.81373 0.89340 0.89338 0.87858 0.88572 0.88614 0.87302 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.57 101.05 1.07 1.36 16 2 O -0.35 -4.14 10.58 -42.47 -0.45 -4.59 16 3 C 0.55 7.75 7.93 34.05 0.27 8.02 16 4 O -0.48 -7.83 15.32 -19.36 -0.30 -8.13 16 5 C -0.07 -1.02 7.18 -36.85 -0.26 -1.29 16 6 O -0.15 -1.77 10.67 4.74 0.05 -1.72 16 7 C 0.00 0.04 12.08 29.64 0.36 0.40 16 8 C -0.20 -2.44 10.24 -39.89 -0.41 -2.84 16 9 C -0.06 -0.91 6.16 -104.42 -0.64 -1.55 16 10 C 0.13 2.40 4.68 36.00 0.17 2.56 16 11 O -0.37 -7.46 8.91 -40.78 -0.36 -7.82 16 12 C 0.50 12.22 7.85 34.41 0.27 12.49 16 13 O -0.51 -13.59 13.38 -19.28 -0.26 -13.85 16 14 C -0.25 -6.28 5.92 -104.39 -0.62 -6.90 16 15 C -0.02 -0.49 9.60 -39.20 -0.38 -0.86 16 16 C -0.26 -5.44 10.03 -39.37 -0.39 -5.84 16 17 C -0.07 -1.52 10.01 -39.59 -0.40 -1.92 16 18 C -0.20 -4.88 7.90 -38.88 -0.31 -5.19 16 19 C 0.12 3.19 5.16 -106.53 -0.55 2.64 16 20 C -0.46 -12.60 7.62 -37.81 -0.29 -12.89 16 21 H 0.10 2.95 5.99 -52.49 -0.31 2.64 16 22 C 0.03 0.83 5.01 -17.29 -0.09 0.75 16 23 N -0.78 -20.60 12.60 55.57 0.70 -19.90 16 24 Si 1.07 22.13 29.98 -169.99 -5.10 17.03 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 27 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.22 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.17 1.92 7.97 -52.49 -0.42 1.50 16 33 H 0.09 1.67 8.05 -51.93 -0.42 1.25 16 34 H 0.09 1.65 8.05 -51.93 -0.42 1.23 16 35 H 0.10 1.96 7.61 -52.49 -0.40 1.56 16 36 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.11 2.68 6.99 -52.49 -0.37 2.32 16 39 H 0.30 8.05 6.62 -40.82 -0.27 7.78 16 LS Contribution 350.58 15.07 5.28 5.28 Total: -1.00 -31.58 350.58 -6.57 -38.14 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -3.94 Total: 6.59 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -2.20 Total: -11.05 kcal Atomic # 7 Polarization: -20.60 SS G_CDS: 0.70 Total: -19.90 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -1.32 Total: -36.10 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.10 Total: 17.03 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.58 -6.57 -38.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791320521.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.164 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds