Wall clock time and date at job start Sat Apr 11 2020 02:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35244 * 126.69927 * 2 1 4 4 C 1.42017 * 103.96037 * 179.97438 * 3 2 1 5 5 N 1.39498 * 126.89507 * 179.97438 * 4 3 2 6 6 C 1.34773 * 120.00265 * 359.72857 * 5 4 3 7 7 O 1.21279 * 119.99879 * 0.26935 * 6 5 4 8 8 C 1.50704 * 120.00476 * 180.27693 * 6 5 4 9 9 O 1.45199 * 109.47346 * 179.97438 * 8 6 5 10 10 C 1.34770 * 116.99827 * 179.97438 * 9 8 6 11 11 O 1.21503 * 120.00244 * 359.97438 * 10 9 8 12 12 C 1.47517 * 119.99752 * 179.97438 * 10 9 8 13 13 C 1.40064 * 119.89875 * 359.72875 * 12 10 9 14 14 C 1.36302 * 120.10050 * 179.76120 * 13 12 10 15 15 C 1.40902 * 119.89438 * 0.50946 * 14 13 12 16 16 C 1.41095 * 120.09902 * 179.71980 * 15 14 13 17 17 H 1.07999 * 120.00056 * 204.66414 * 16 15 14 18 18 C 1.40237 * 119.99837 * 24.66200 * 16 15 14 19 19 N 1.30641 * 120.00426 * 17.86589 * 18 16 15 20 20 Si 1.86801 * 120.00203 * 197.86372 * 18 16 15 21 21 H 1.48497 * 109.47011 * 59.99575 * 20 18 16 22 22 H 1.48497 * 109.47507 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46961 * 300.00259 * 20 18 16 24 24 C 1.40898 * 119.80540 * 359.73987 * 15 14 13 25 25 C 1.36305 * 119.89480 * 0.02562 * 24 15 14 26 26 N 1.30720 * 106.21172 * 0.22674 * 4 3 2 27 27 O 1.20915 * 111.47277 * 359.59656 * 26 4 3 28 28 H 1.08995 * 109.46689 * 89.99979 * 1 2 3 29 29 H 1.08999 * 109.47054 * 210.00403 * 1 2 3 30 30 H 1.09002 * 109.46649 * 329.99960 * 1 2 3 31 31 H 1.08001 * 128.01898 * 359.97438 * 3 2 1 32 32 H 0.97001 * 119.99962 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.46602 * 299.99667 * 8 6 5 34 34 H 1.08998 * 109.46825 * 59.99327 * 8 6 5 35 35 H 1.08000 * 119.95140 * 0.02562 * 13 12 10 36 36 H 1.08000 * 120.05621 * 180.23187 * 14 13 12 37 37 H 0.96999 * 120.00427 * 180.02562 * 19 18 16 38 38 H 1.08000 * 120.05531 * 179.97438 * 24 15 14 39 39 H 1.08008 * 119.94548 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3153 1.0844 0.0000 4 6 3.6251 0.5354 0.0006 5 7 4.8287 1.2406 0.0004 6 6 4.8202 2.5883 -0.0061 7 8 3.7660 3.1880 -0.0067 8 6 6.1204 3.3502 -0.0127 9 8 5.8460 4.7760 -0.0195 10 6 6.9096 5.6037 -0.0254 11 8 8.0353 5.1465 -0.0244 12 6 6.7069 7.0649 -0.0331 13 6 5.4083 7.5896 -0.0400 14 6 5.2163 8.9390 -0.0422 15 6 6.3267 9.8063 -0.0484 16 6 6.1330 11.2039 -0.0567 17 1 6.9004 11.8531 -0.4516 18 6 4.9438 11.7499 0.4478 19 7 4.1773 11.0365 1.2289 20 14 4.4559 13.4973 0.0030 21 1 4.3056 13.6095 -1.4701 22 1 3.1666 13.8334 0.6587 23 1 5.5075 14.4380 0.4662 24 6 7.6313 9.2739 -0.0467 25 6 7.8137 7.9232 -0.0397 26 7 3.4765 -0.7633 -0.0041 27 8 2.3083 -1.0752 0.0006 28 1 -0.3632 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 2.0306 2.1262 -0.0004 32 1 5.6718 0.7610 0.0005 33 1 6.6956 3.0948 0.8773 34 1 6.6917 3.0861 -0.9026 35 1 4.5578 6.9240 -0.0393 36 1 4.2147 9.3429 -0.0438 37 1 3.3546 11.4140 1.5776 38 1 8.4853 9.9350 -0.0519 39 1 8.8134 7.5141 -0.0388 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758688439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:28:51 Heat of formation + Delta-G solvation = -37.221041 kcal Electronic energy + Delta-G solvation = -26033.995412 eV Core-core repulsion = 21910.143426 eV Total energy + Delta-G solvation = -4123.851986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.09679 -40.48485 -39.45844 -37.49468 -36.00469 -35.53573 -34.00046 -33.88388 -32.44224 -30.52678 -29.54910 -28.83290 -28.06952 -26.10513 -23.98601 -22.61649 -21.67095 -21.01822 -20.93368 -20.07694 -17.92585 -17.72962 -17.60227 -17.52216 -17.02861 -16.48881 -16.47795 -16.03334 -15.43759 -14.93124 -14.44352 -14.05655 -13.81845 -13.80220 -13.58476 -13.46145 -13.04196 -12.95222 -12.73773 -12.56230 -12.14917 -11.95204 -11.90807 -11.49171 -11.47191 -11.32495 -11.06957 -10.75835 -10.47997 -10.27202 -10.19319 -9.68148 -9.64608 -9.55065 -9.41085 -9.12408 -7.79723 -7.69205 -7.13660 -4.72328 1.14577 1.72764 1.94848 1.97062 2.54901 2.84537 2.88167 2.90092 2.92896 3.00119 3.34995 3.53740 3.67365 3.98348 4.30813 4.41314 4.62311 4.81019 4.97137 4.97895 4.99701 5.07329 5.27235 5.47363 5.51661 5.68883 5.78745 6.11437 6.17642 6.22149 6.68254 6.72230 6.77057 6.85455 6.94372 7.03691 7.37464 7.60413 7.64194 7.73409 7.79517 7.96035 8.04985 8.31206 8.51825 8.57686 8.65138 9.77272 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.016751 B = 0.002210 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.113459 B =12667.950251 C =14248.394323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.024 4.024 3 C -0.226 4.226 4 C 0.252 3.748 5 N -0.633 5.633 6 C 0.525 3.475 7 O -0.483 6.483 8 C 0.057 3.943 9 O -0.336 6.336 10 C 0.517 3.483 11 O -0.552 6.552 12 C -0.276 4.276 13 C -0.040 4.040 14 C -0.185 4.185 15 C 0.131 3.869 16 C -0.431 4.431 17 H 0.088 0.912 18 C 0.072 3.928 19 N -0.761 5.761 20 Si 0.917 3.083 21 H -0.259 1.259 22 H -0.274 1.274 23 H -0.261 1.261 24 C -0.239 4.239 25 C -0.016 4.016 26 N -0.392 5.392 27 O 0.095 5.905 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.192 0.808 32 H 0.421 0.579 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.122 0.878 37 H 0.290 0.710 38 H 0.102 0.898 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.386 -15.443 -1.503 16.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 C -0.249 4.249 4 C 0.003 3.997 5 N -0.287 5.287 6 C 0.311 3.689 7 O -0.353 6.353 8 C -0.021 4.021 9 O -0.253 6.253 10 C 0.370 3.630 11 O -0.446 6.446 12 C -0.279 4.279 13 C -0.059 4.059 14 C -0.204 4.204 15 C 0.128 3.872 16 C -0.458 4.458 17 H 0.106 0.894 18 C -0.151 4.151 19 N -0.383 5.383 20 Si 0.740 3.260 21 H -0.183 1.183 22 H -0.199 1.199 23 H -0.185 1.185 24 C -0.259 4.259 25 C -0.035 4.035 26 N -0.108 5.108 27 O 0.035 5.965 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.209 0.791 32 H 0.258 0.742 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.140 0.860 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.241 -16.095 -1.344 17.315 hybrid contribution 0.099 1.034 -0.031 1.040 sum -6.142 -15.061 -1.375 16.323 Atomic orbital electron populations 1.20360 0.83629 1.04808 1.04280 1.24456 0.96530 0.85727 1.02044 1.22785 0.89234 1.02347 1.10538 1.20471 0.88360 0.88841 1.02049 1.42362 1.06390 1.06154 1.73759 1.20490 0.91957 0.80623 0.75830 1.90713 1.32389 1.67529 1.44619 1.22255 0.92947 0.81630 1.05286 1.86692 1.38321 1.14445 1.85825 1.21702 0.81275 0.88041 0.71978 1.90707 1.24792 1.78049 1.51025 1.18122 0.95129 0.85671 1.28952 1.20695 0.94543 0.95620 0.95077 1.21022 0.99459 0.91680 1.08267 1.17866 0.91109 0.93469 0.84764 1.19923 1.01014 0.92551 1.32306 0.89418 1.26180 0.95310 1.01120 0.92488 1.69732 1.10798 1.38531 1.19211 0.86204 0.78720 0.80725 0.80357 1.18324 1.19900 1.18537 1.20678 0.96592 0.93612 1.14968 1.20337 0.96103 0.93032 0.93997 1.74034 0.97700 1.13006 1.26107 1.84784 1.10391 1.32379 1.68993 0.89237 0.89754 0.88737 0.79105 0.74224 0.87872 0.87892 0.87745 0.85987 0.89820 0.87987 0.87884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.45 36.01 0.38 0.00 16 2 C -0.02 -0.23 7.48 -35.37 -0.26 -0.49 16 3 C -0.23 -2.71 9.79 -39.20 -0.38 -3.10 16 4 C 0.25 3.16 8.18 -154.83 -1.27 1.89 16 5 N -0.63 -6.92 5.42 -11.44 -0.06 -6.98 16 6 C 0.53 7.04 7.87 -10.99 -0.09 6.96 16 7 O -0.48 -8.14 13.78 -14.10 -0.19 -8.33 16 8 C 0.06 0.77 5.95 36.01 0.21 0.98 16 9 O -0.34 -6.34 8.98 -47.36 -0.43 -6.76 16 10 C 0.52 10.98 7.89 34.51 0.27 11.25 16 11 O -0.55 -12.02 16.11 -19.27 -0.31 -12.33 16 12 C -0.28 -6.38 5.89 -104.75 -0.62 -7.00 16 13 C -0.04 -0.95 9.55 -39.59 -0.38 -1.33 16 14 C -0.19 -4.58 8.63 -39.27 -0.34 -4.92 16 15 C 0.13 3.28 5.58 -106.80 -0.60 2.69 16 16 C -0.43 -10.40 9.04 -37.75 -0.34 -10.74 16 17 H 0.09 1.99 7.91 -52.49 -0.42 1.57 16 18 C 0.07 1.63 5.14 -17.31 -0.09 1.55 16 19 N -0.76 -17.92 10.95 55.56 0.61 -17.31 16 20 Si 0.92 16.76 29.60 -169.99 -5.03 11.72 16 21 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 22 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 23 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 24 C -0.24 -5.60 9.73 -39.27 -0.38 -5.99 16 25 C -0.02 -0.37 9.52 -39.59 -0.38 -0.74 16 26 N -0.39 -4.89 12.10 31.19 0.38 -4.51 16 27 O 0.09 1.05 11.19 17.06 0.19 1.24 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.19 2.46 6.22 -52.49 -0.33 2.13 16 32 H 0.42 3.22 8.82 -40.82 -0.36 2.86 16 33 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.10 2.31 7.59 -52.49 -0.40 1.91 16 36 H 0.12 3.06 6.16 -52.49 -0.32 2.73 16 37 H 0.29 6.15 8.29 -40.82 -0.34 5.81 16 38 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.10 2.20 7.63 -52.48 -0.40 1.80 16 LS Contribution 351.52 15.07 5.30 5.30 Total: -1.00 -30.46 351.52 -7.70 -38.16 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -3.89 Total: 8.80 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -4.26 Total: -8.99 kcal Atomic # 7 Polarization: -29.73 SS G_CDS: 0.92 Total: -28.81 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.74 Total: -26.18 kcal Atomic # 14 Polarization: 16.76 SS G_CDS: -5.03 Total: 11.72 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.46 -7.70 -38.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758688439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.934 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds