Wall clock time and date at job start Sat Apr 11 2020 02:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30908 * 1 3 3 Si 1.86802 * 119.99877 * 2 1 4 4 H 1.48498 * 109.47036 * 240.00007 * 3 2 1 5 5 H 1.48492 * 109.47192 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46750 * 120.00214 * 3 2 1 7 7 C 1.39863 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99949 * 197.96412 * 7 2 1 9 9 C 1.41135 * 120.00206 * 17.96221 * 7 2 1 10 10 C 1.40894 * 120.15467 * 24.61105 * 9 7 2 11 11 C 1.36335 * 119.83509 * 179.97438 * 10 9 7 12 12 C 1.39563 * 120.16251 * 359.97438 * 11 10 9 13 13 N 1.38859 * 119.84229 * 179.97438 * 12 11 10 14 14 C 1.46501 * 120.00023 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46968 * 179.97438 * 14 13 12 16 16 C 1.33644 * 126.03919 * 89.97740 * 15 14 13 17 17 N 1.31784 * 114.49865 * 179.97438 * 16 15 14 18 18 C 1.29023 * 117.12636 * 359.97438 * 17 16 15 19 19 C 1.50704 * 124.91352 * 179.97438 * 18 17 16 20 20 H 1.08995 * 109.82176 * 195.72983 * 19 18 17 21 21 C 1.54373 * 109.83045 * 74.83966 * 19 18 17 22 22 C 1.55540 * 102.14897 * 219.05400 * 21 19 18 23 23 C 1.54941 * 100.94663 * 34.15379 * 22 21 19 24 24 O 1.43243 * 109.83098 * 316.61122 * 19 18 17 25 25 S 1.70972 * 110.16720 * 0.23166 * 18 17 16 26 26 C 1.39566 * 120.31782 * 0.28032 * 12 11 10 27 27 C 1.36337 * 120.15653 * 359.47755 * 26 12 11 28 28 H 0.96998 * 120.00121 * 359.97438 * 1 2 3 29 29 H 1.07991 * 120.07832 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.91486 * 180.02562 * 11 10 9 31 31 H 0.97007 * 120.00246 * 0.02562 * 13 12 11 32 32 H 1.08998 * 109.47216 * 60.00184 * 14 13 12 33 33 H 1.08997 * 109.47187 * 299.99590 * 14 13 12 34 34 H 1.07999 * 122.74736 * 359.96904 * 16 15 14 35 35 H 1.09007 * 110.84925 * 337.22553 * 21 19 18 36 36 H 1.08997 * 110.84859 * 100.84549 * 21 19 18 37 37 H 1.08997 * 111.13721 * 276.22254 * 22 21 19 38 38 H 1.09003 * 111.10002 * 152.06346 * 22 21 19 39 39 H 1.09003 * 110.31068 * 204.62229 * 23 22 21 40 40 H 1.09003 * 110.39689 * 82.49585 * 23 22 21 41 41 H 1.08002 * 119.92437 * 179.72400 * 26 12 11 42 42 H 1.08007 * 120.07959 * 180.23764 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.0968 1.6964 -1.2125 5 1 1.2781 2.7464 0.0006 6 1 3.0968 1.6963 1.2125 7 6 2.0084 -1.2112 -0.0005 8 1 3.0490 -1.2342 0.2879 9 6 1.3544 -2.4036 -0.3780 10 6 0.2260 -2.3557 -1.2204 11 6 -0.4004 -3.5116 -1.5814 12 6 0.0737 -4.7401 -1.1190 13 7 -0.5698 -5.9132 -1.4904 14 6 -0.0755 -7.2046 -1.0065 15 6 -0.9435 -8.3103 -1.5499 16 6 -0.7546 -8.9654 -2.6993 17 7 -1.6546 -9.8940 -2.9533 18 6 -2.5917 -10.0589 -2.0819 19 6 -3.7069 -11.0663 -2.1948 20 1 -4.5012 -10.8189 -1.4906 21 6 -3.1662 -12.4816 -1.8986 22 6 -3.9290 -13.3482 -2.9409 23 6 -4.0270 -12.3598 -4.1300 24 8 -4.2253 -11.0697 -3.5302 25 16 -2.3892 -8.9644 -0.7841 26 6 1.1876 -4.7948 -0.2800 27 6 1.8270 -3.6473 0.0852 28 1 -0.4850 0.8400 0.0004 29 1 -0.1411 -1.4059 -1.5799 30 1 -1.2652 -3.4764 -2.2274 31 1 -1.3468 -5.8776 -2.0702 32 1 -0.1068 -7.2207 0.0829 33 1 0.9512 -7.3497 -1.3427 34 1 0.0681 -8.7513 -3.3654 35 1 -2.0902 -12.5289 -2.0668 36 1 -3.4148 -12.7869 -0.8822 37 1 -4.9185 -13.6224 -2.5753 38 1 -3.3531 -14.2331 -3.2120 39 1 -4.8747 -12.6156 -4.7657 40 1 -3.1038 -12.3698 -4.7094 41 1 1.5464 -5.7486 0.0777 42 1 2.6913 -3.6914 0.7315 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273538310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:29:54 Heat of formation + Delta-G solvation = 23.390053 kcal Electronic energy + Delta-G solvation = -23827.552340 eV Core-core repulsion = 20284.914614 eV Total energy + Delta-G solvation = -3542.637726 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.38142 -39.14331 -37.95166 -35.35129 -33.25974 -32.58850 -31.66554 -30.08070 -29.34539 -28.17321 -26.16572 -24.62087 -23.70879 -22.59764 -22.12031 -20.94005 -20.22318 -19.31986 -18.47711 -17.20211 -16.82846 -16.52714 -16.08052 -15.73373 -15.23282 -14.79921 -14.61748 -14.38108 -13.89680 -13.73986 -13.66886 -13.54713 -12.96244 -12.72374 -12.36193 -12.21028 -12.02870 -11.97078 -11.75032 -11.68563 -11.54704 -11.35549 -11.14559 -11.01094 -10.86946 -10.48346 -10.21030 -9.76383 -9.65990 -9.40881 -9.31408 -9.25227 -8.96497 -8.58024 -7.50803 -6.66322 -6.43055 -4.05208 0.46944 1.12872 1.59509 2.63193 2.91672 3.08860 3.14054 3.17162 3.34664 3.55641 3.73880 4.04640 4.10333 4.38406 4.39037 4.49965 4.65563 4.74929 4.81079 4.83504 5.10979 5.17762 5.24638 5.32427 5.40206 5.41928 5.67987 5.72790 5.78767 5.88502 6.04136 6.24372 6.27993 6.55417 6.81952 7.03846 7.17907 7.29052 7.55364 7.59183 7.64584 7.77025 8.13513 8.32012 8.43685 8.62286 8.77128 9.04601 9.13157 10.36054 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.042512 B = 0.001884 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.475575 B =14858.636513 C =15043.044493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.075 3.925 3 Si 0.904 3.096 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.467 4.467 8 H 0.073 0.927 9 C 0.076 3.924 10 C -0.123 4.123 11 C -0.159 4.159 12 C 0.089 3.911 13 N -0.758 5.758 14 C 0.216 3.784 15 C -0.222 4.222 16 C 0.047 3.953 17 N -0.455 5.455 18 C 0.019 3.981 19 C 0.162 3.838 20 H 0.102 0.898 21 C -0.143 4.143 22 C -0.154 4.154 23 C 0.050 3.950 24 O -0.359 6.359 25 S 0.146 5.854 26 C -0.159 4.159 27 C -0.189 4.189 28 H 0.277 0.723 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.387 0.613 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.177 0.823 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.003 -23.477 -3.396 25.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.498 4.498 8 H 0.091 0.909 9 C 0.073 3.927 10 C -0.143 4.143 11 C -0.181 4.181 12 C -0.008 4.008 13 N -0.395 5.395 14 C 0.089 3.911 15 C -0.344 4.344 16 C -0.105 4.105 17 N -0.169 5.169 18 C -0.259 4.259 19 C 0.101 3.899 20 H 0.119 0.881 21 C -0.182 4.182 22 C -0.192 4.192 23 C -0.026 4.026 24 O -0.277 6.277 25 S 0.401 5.599 26 C -0.181 4.181 27 C -0.210 4.210 28 H 0.088 0.912 29 H 0.137 0.863 30 H 0.105 0.895 31 H 0.219 0.781 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.194 0.806 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.740 -23.370 -2.923 25.121 hybrid contribution 0.921 0.887 -0.662 1.440 sum -7.819 -22.483 -3.585 24.072 Atomic orbital electron populations 1.69845 1.07373 1.28795 1.37356 1.25809 0.94668 1.00930 0.92681 0.86450 0.80130 0.80787 0.79753 1.19063 1.20576 1.19254 1.19341 0.97934 0.91374 1.41120 0.90928 1.17509 0.92343 0.92030 0.90793 1.20926 0.98156 0.96366 0.98857 1.20033 1.01451 0.91791 1.04807 1.17304 0.96229 0.84867 1.02373 1.43882 1.35353 1.01719 1.58527 1.19275 0.94327 0.79922 0.97593 1.26217 1.01857 1.05937 1.00351 1.21827 0.99440 0.93319 0.95928 1.66185 1.02616 1.18920 1.29168 1.27404 1.00421 1.02499 0.95590 1.21164 0.90493 0.91830 0.86458 0.88084 1.23223 1.01858 0.92324 1.00766 1.23318 1.01387 0.98949 0.95517 1.23433 1.01926 0.81803 0.95438 1.88524 1.79746 1.33169 1.26247 1.84036 1.22347 1.29244 1.24249 1.19852 0.97958 0.97118 1.03146 1.20541 1.02758 0.92632 1.05041 0.91213 0.86284 0.89509 0.78065 0.92210 0.91185 0.80557 0.89677 0.89253 0.90055 0.89529 0.89435 0.91632 0.89480 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.44 10.96 55.54 0.61 -20.83 16 2 C 0.07 1.93 5.13 -17.34 -0.09 1.84 16 3 Si 0.90 19.25 29.60 -169.99 -5.03 14.21 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.47 -12.67 9.03 -37.88 -0.34 -13.01 16 8 H 0.07 1.90 7.91 -52.48 -0.41 1.48 16 9 C 0.08 2.06 5.57 -106.79 -0.60 1.46 16 10 C -0.12 -3.23 8.64 -39.26 -0.34 -3.57 16 11 C -0.16 -3.73 9.82 -39.77 -0.39 -4.12 16 12 C 0.09 1.92 6.67 -83.69 -0.56 1.36 16 13 N -0.76 -13.23 5.69 -59.67 -0.34 -13.57 16 14 C 0.22 3.12 5.42 -5.19 -0.03 3.10 16 15 C -0.22 -2.84 5.97 -35.92 -0.21 -3.06 16 16 C 0.05 0.60 11.25 -19.18 -0.22 0.39 16 17 N -0.45 -6.02 10.52 -11.86 -0.12 -6.14 16 18 C 0.02 0.22 6.16 -13.46 -0.08 0.14 16 19 C 0.16 1.51 4.04 -27.16 -0.11 1.40 16 20 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 21 C -0.14 -0.96 6.55 -24.66 -0.16 -1.13 16 22 C -0.15 -0.84 7.16 -24.36 -0.17 -1.02 16 23 C 0.05 0.39 7.78 38.18 0.30 0.69 16 24 O -0.36 -3.98 10.98 -35.23 -0.39 -4.37 16 25 S 0.15 1.64 23.18 -107.50 -2.49 -0.85 16 26 C -0.16 -3.53 9.23 -39.77 -0.37 -3.89 16 27 C -0.19 -4.67 9.74 -39.27 -0.38 -5.05 16 28 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 29 H 0.12 3.24 6.16 -52.49 -0.32 2.92 16 30 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.39 6.44 8.46 -40.82 -0.35 6.09 16 32 H 0.06 0.88 7.92 -51.93 -0.41 0.47 16 33 H 0.07 0.99 7.94 -51.93 -0.41 0.57 16 34 H 0.18 2.01 8.06 -52.49 -0.42 1.59 16 35 H 0.08 0.67 7.84 -51.92 -0.41 0.27 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 1.69 6.68 -52.49 -0.35 1.34 16 42 H 0.09 2.13 8.06 -52.48 -0.42 1.70 16 LS Contribution 364.63 15.07 5.49 5.49 Total: -1.00 -30.02 364.63 -11.63 -41.64 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -5.60 Total: 8.87 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -3.75 Total: -24.47 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.14 Total: -40.54 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.39 Total: -4.37 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.21 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.49 Total: -0.85 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.02 -11.63 -41.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273538310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.035 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds