Wall clock time and date at job start Sat Apr 11 2020 02:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 S 1.81391 * 109.47469 * 23.00591 * 3 2 1 5 5 C 1.76206 * 103.00287 * 179.97438 * 4 3 2 6 6 C 1.39040 * 120.18000 * 0.02588 * 5 4 3 7 7 C 1.37913 * 120.05871 * 179.97438 * 6 5 4 8 8 C 1.38655 * 120.43113 * 359.97438 * 7 6 5 9 9 C 1.37729 * 120.36790 * 359.72344 * 8 7 6 10 10 C 1.39745 * 119.93597 * 0.55560 * 9 8 7 11 11 C 1.47386 * 120.21470 * 179.72158 * 10 9 8 12 12 O 1.21609 * 119.99971 * 125.93884 * 11 10 9 13 13 N 1.34776 * 120.00113 * 305.93013 * 11 10 9 14 14 C 1.46928 * 120.62919 * 354.27823 * 13 11 10 15 15 C 1.53189 * 108.77806 * 233.60439 * 14 13 11 16 16 C 1.53044 * 109.31235 * 305.36906 * 15 14 13 17 17 C 1.53039 * 109.53937 * 61.36073 * 16 15 14 18 18 H 1.09002 * 109.50017 * 58.61910 * 17 16 15 19 19 C 1.50701 * 109.49774 * 178.68126 * 17 16 15 20 20 H 1.08001 * 119.99827 * 359.93720 * 19 17 16 21 21 C 1.37878 * 119.99924 * 179.65928 * 19 17 16 22 22 N 1.31517 * 119.99891 * 0.27860 * 21 19 17 23 23 Si 1.86797 * 119.99913 * 180.27878 * 21 19 17 24 24 H 1.48494 * 109.47213 * 90.00061 * 23 21 19 25 25 H 1.48505 * 109.47164 * 210.00223 * 23 21 19 26 26 H 1.48504 * 109.47023 * 330.00057 * 23 21 19 27 27 C 1.46933 * 120.60617 * 174.29741 * 13 11 10 28 28 H 1.09002 * 109.46918 * 263.00121 * 3 2 1 29 29 H 1.09006 * 109.47000 * 143.00890 * 3 2 1 30 30 H 1.08005 * 119.97115 * 359.94857 * 6 5 4 31 31 H 1.07997 * 119.78362 * 179.97438 * 7 6 5 32 32 H 1.07994 * 119.81058 * 180.02562 * 8 7 6 33 33 H 1.08005 * 120.03446 * 180.30316 * 9 8 7 34 34 H 1.09000 * 109.58661 * 113.81726 * 14 13 11 35 35 H 1.09000 * 109.59107 * 353.39942 * 14 13 11 36 36 H 1.08996 * 109.49759 * 185.41353 * 15 14 13 37 37 H 1.08999 * 109.52132 * 65.33323 * 15 14 13 38 38 H 1.08999 * 109.45658 * 301.33832 * 16 15 14 39 39 H 1.08998 * 109.45679 * 181.38175 * 16 15 14 40 40 H 0.97001 * 119.99615 * 179.97438 * 22 21 19 41 41 H 1.09001 * 109.61445 * 6.62040 * 27 13 11 42 42 H 1.09004 * 109.55846 * 246.19702 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 16 3.2134 -1.5732 -0.6684 5 6 4.9642 -1.3893 -0.5915 6 6 5.5227 -0.2173 -0.0938 7 6 6.8933 -0.0762 -0.0342 8 6 7.7240 -1.0982 -0.4679 9 6 7.1897 -2.2691 -0.9583 10 6 5.8030 -2.4261 -1.0310 11 6 5.2246 -3.6741 -1.5605 12 8 4.4138 -4.2962 -0.9012 13 7 5.5942 -4.1259 -2.7753 14 6 6.4751 -3.3245 -3.6358 15 6 5.8061 -3.1535 -5.0033 16 6 5.4558 -4.5308 -5.5712 17 6 4.4701 -5.2346 -4.6358 18 1 3.5724 -4.6256 -4.5282 19 6 4.1008 -6.5772 -5.2121 20 1 4.5257 -6.8966 -6.1522 21 6 3.2250 -7.4002 -4.5363 22 7 2.7076 -7.0112 -3.3915 23 14 2.7734 -9.0677 -5.2469 24 1 3.7280 -10.0917 -4.7518 25 1 1.3964 -9.4293 -4.8244 26 1 2.8366 -9.0076 -6.7293 27 6 5.1232 -5.4292 -3.2638 28 1 2.9712 0.1260 1.0200 29 1 2.9709 0.8217 -0.6184 30 1 4.8826 0.5835 0.2460 31 1 7.3224 0.8362 0.3527 32 1 8.7959 -0.9772 -0.4164 33 1 7.8418 -3.0636 -1.2901 34 1 7.4302 -3.8353 -3.7577 35 1 6.6369 -2.3462 -3.1832 36 1 6.4900 -2.6434 -5.6816 37 1 4.8962 -2.5636 -4.8924 38 1 6.3630 -5.1286 -5.6592 39 1 5.0019 -4.4130 -6.5551 40 1 2.0912 -7.5901 -2.9163 41 1 4.3930 -5.8393 -2.5662 42 1 5.9681 -6.1118 -3.3549 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855260310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:29:51 Heat of formation + Delta-G solvation = 1.664246 kcal Electronic energy + Delta-G solvation = -25604.034934 eV Core-core repulsion = 22060.455106 eV Total energy + Delta-G solvation = -3543.579828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.35980 -39.40770 -38.20761 -37.85479 -35.31631 -33.57593 -32.50798 -32.15491 -31.37053 -30.94024 -27.15666 -26.52783 -24.20130 -23.76278 -23.34991 -21.60990 -20.36293 -19.31535 -18.64313 -17.98533 -17.80956 -17.13841 -16.86648 -16.51144 -16.31084 -16.08041 -15.53820 -15.38494 -15.17808 -14.94596 -14.68560 -14.49929 -14.25406 -14.01710 -13.93495 -13.72986 -13.59882 -13.47432 -13.17009 -12.90712 -12.74710 -12.66435 -12.29468 -12.25175 -12.07588 -11.82787 -11.64321 -11.32706 -11.03586 -10.95277 -10.72532 -10.59941 -10.51383 -9.85643 -9.38218 -8.51188 -8.10864 -6.28900 -0.03043 0.03156 0.32617 1.23488 1.39077 1.39527 1.50621 1.57825 1.77901 1.99601 2.24477 2.41655 2.69286 2.76600 3.16909 3.59079 3.89444 4.06865 4.08111 4.16596 4.20421 4.22720 4.33011 4.45826 4.50734 4.59095 4.62508 4.75499 4.80973 4.85218 4.99276 5.08827 5.21488 5.25691 5.28180 5.36372 5.41440 5.53451 5.55118 5.65338 5.89883 5.95769 6.00457 6.31717 6.32333 6.66506 6.84550 7.30811 7.41795 8.91962 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.011627 B = 0.004100 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.678765 B = 6827.312678 C = 8340.625617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.243 3.757 3 C -0.020 4.020 4 S -0.126 6.126 5 C -0.058 4.058 6 C -0.131 4.131 7 C -0.070 4.070 8 C -0.117 4.117 9 C -0.077 4.077 10 C -0.129 4.129 11 C 0.536 3.464 12 O -0.576 6.576 13 N -0.601 5.601 14 C 0.105 3.895 15 C -0.126 4.126 16 C -0.104 4.104 17 C 0.039 3.961 18 H -0.020 1.020 19 C -0.536 4.536 20 H 0.063 0.937 21 C 0.009 3.991 22 N -0.915 5.915 23 Si 0.957 3.043 24 H -0.272 1.272 25 H -0.290 1.290 26 H -0.261 1.261 27 C 0.127 3.873 28 H 0.173 0.827 29 H 0.175 0.825 30 H 0.169 0.831 31 H 0.174 0.826 32 H 0.166 0.834 33 H 0.135 0.865 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.043 0.957 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.258 0.742 41 H 0.075 0.925 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.801 21.047 6.430 27.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.075 4.075 3 C -0.170 4.170 4 S 0.118 5.882 5 C -0.172 4.172 6 C -0.154 4.154 7 C -0.089 4.089 8 C -0.137 4.137 9 C -0.097 4.097 10 C -0.138 4.138 11 C 0.325 3.675 12 O -0.457 6.457 13 N -0.333 5.333 14 C -0.017 4.017 15 C -0.164 4.164 16 C -0.142 4.142 17 C 0.020 3.980 18 H -0.002 1.002 19 C -0.574 4.574 20 H 0.081 0.919 21 C -0.190 4.190 22 N -0.554 5.554 23 Si 0.782 3.218 24 H -0.198 1.198 25 H -0.216 1.216 26 H -0.186 1.186 27 C 0.005 3.995 28 H 0.191 0.809 29 H 0.193 0.807 30 H 0.186 0.814 31 H 0.192 0.808 32 H 0.183 0.817 33 H 0.153 0.847 34 H 0.103 0.897 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.749 19.766 6.506 24.404 hybrid contribution -0.018 -0.901 0.046 0.902 sum 12.731 18.865 6.551 23.683 Atomic orbital electron populations 1.81289 1.14060 1.08993 1.09977 1.28284 0.94347 0.92607 0.92217 1.21367 0.83636 1.01179 1.10772 1.87820 1.00408 1.20249 1.79701 1.21835 0.94552 0.97865 1.02938 1.21564 0.97541 0.95244 1.01097 1.21704 0.91985 0.99883 0.95340 1.21529 1.02157 0.92029 0.97976 1.21379 0.91111 0.99424 0.97760 1.19471 0.95321 0.93099 1.05890 1.19020 0.81165 0.85690 0.81672 1.90812 1.35008 1.59986 1.59860 1.48451 1.48524 1.20441 1.15841 1.22051 0.92844 0.96291 0.90467 1.21909 1.00772 0.97048 0.96688 1.21508 0.98788 0.95710 0.98162 1.18883 0.92799 0.94607 0.91726 1.00181 1.21528 1.26551 1.02524 1.06820 0.91850 1.25913 0.95849 1.02118 0.95128 1.70119 1.31155 1.38066 1.16023 0.85569 0.77191 0.79887 0.79121 1.19796 1.21614 1.18560 1.21686 0.97140 0.81917 0.98799 0.80927 0.80733 0.81397 0.80837 0.81689 0.84669 0.89654 0.87876 0.87592 0.93763 0.92067 0.93144 0.93301 0.90712 0.94212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.02 18.54 20.01 0.37 -13.65 16 2 C 0.24 5.56 15.44 89.44 1.38 6.94 16 3 C -0.02 -0.28 4.82 70.18 0.34 0.06 16 4 S -0.13 -3.70 20.12 -56.49 -1.14 -4.83 16 5 C -0.06 -1.40 6.16 23.00 0.14 -1.26 16 6 C -0.13 -1.64 9.36 22.39 0.21 -1.43 16 7 C -0.07 -0.60 10.03 22.29 0.22 -0.37 16 8 C -0.12 -1.33 10.02 22.25 0.22 -1.10 16 9 C -0.08 -1.54 7.78 22.51 0.18 -1.37 16 10 C -0.13 -3.77 4.61 -19.97 -0.09 -3.86 16 11 C 0.54 22.54 6.53 86.65 0.57 23.11 16 12 O -0.58 -30.68 15.43 -4.06 -0.06 -30.75 16 13 N -0.60 -24.69 2.97 -822.81 -2.45 -27.13 16 14 C 0.11 3.04 5.58 86.36 0.48 3.52 16 15 C -0.13 -3.84 6.08 30.67 0.19 -3.66 16 16 C -0.10 -4.09 5.11 30.62 0.16 -3.93 16 17 C 0.04 2.04 2.25 -11.46 -0.03 2.01 16 18 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 19 C -0.54 -30.25 8.57 25.60 0.22 -30.03 16 20 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 21 C 0.01 0.54 5.30 84.65 0.45 0.98 16 22 N -0.91 -57.76 11.39 21.45 0.24 -57.52 16 23 Si 0.96 45.48 29.54 68.60 2.03 47.50 16 24 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 26 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 27 C 0.13 6.50 5.41 86.36 0.47 6.96 16 28 H 0.17 1.02 7.75 -2.39 -0.02 1.00 16 29 H 0.18 0.92 7.75 -2.39 -0.02 0.90 16 30 H 0.17 0.69 5.90 -2.91 -0.02 0.67 16 31 H 0.17 0.06 8.06 -2.91 -0.02 0.04 16 32 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 33 H 0.14 2.55 7.77 -2.91 -0.02 2.53 16 34 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.10 2.41 5.39 -2.39 -0.01 2.40 16 36 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 41 H 0.07 4.62 5.11 -2.39 -0.01 4.61 16 42 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -88.93 361.17 5.14 -83.79 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 1.04 Total: 6.02 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 5.10 Total: -3.43 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -1.83 Total: -98.30 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.06 Total: -30.75 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.14 Total: -4.83 kcal Total: -88.93 5.14 -83.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855260310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.453 kcal (2) G-P(sol) polarization free energy of solvation -88.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds