Wall clock time and date at job start Sat Apr 11 2020 02:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86801 * 120.00040 * 2 1 4 4 H 1.48499 * 109.47289 * 240.00033 * 3 2 1 5 5 H 1.48496 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47168 * 120.00087 * 3 2 1 7 7 C 1.38814 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00305 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99450 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99430 * 179.97438 * 9 7 2 11 11 C 1.53045 * 109.45726 * 155.00399 * 10 9 7 12 12 C 1.53189 * 109.31500 * 181.38441 * 11 10 9 13 13 N 1.46931 * 108.77522 * 305.36605 * 12 11 10 14 14 C 1.34776 * 120.62861 * 233.58733 * 13 12 11 15 15 O 1.21582 * 119.99895 * 5.85127 * 14 13 12 16 16 C 1.47630 * 120.00088 * 185.85722 * 14 13 12 17 17 C 1.40238 * 119.94538 * 41.94939 * 16 14 13 18 18 C 1.36019 * 120.18623 * 180.02562 * 17 16 14 19 19 C 1.40106 * 120.66706 * 359.97438 * 18 17 16 20 20 S 1.75967 * 130.37044 * 180.02562 * 19 18 17 21 21 C 1.75279 * 92.22495 * 179.97438 * 20 19 18 22 22 C 1.31736 * 111.47071 * 0.02562 * 21 20 19 23 23 C 1.39967 * 120.02747 * 0.02562 * 19 18 17 24 24 C 1.38642 * 119.94608 * 221.96802 * 16 14 13 25 25 C 1.46921 * 118.73992 * 53.85607 * 13 12 11 26 26 C 1.53043 * 109.45980 * 275.06722 * 10 9 7 27 27 H 0.97005 * 120.00251 * 359.97438 * 1 2 3 28 28 H 0.96997 * 119.99755 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.46168 * 35.03037 * 10 9 7 30 30 H 1.08998 * 109.49883 * 61.42773 * 11 10 9 31 31 H 1.09002 * 109.52054 * 301.34990 * 11 10 9 32 32 H 1.08997 * 109.59164 * 185.57303 * 12 11 10 33 33 H 1.09008 * 109.70341 * 65.21376 * 12 11 10 34 34 H 1.07996 * 119.90445 * 0.04089 * 17 16 14 35 35 H 1.08005 * 119.66100 * 180.02562 * 18 17 16 36 36 H 1.07999 * 124.26297 * 180.02562 * 21 20 19 37 37 H 1.08005 * 122.55506 * 179.97438 * 22 21 20 38 38 H 1.08000 * 119.95495 * 0.27704 * 24 16 14 39 39 H 1.09006 * 109.58838 * 65.92610 * 25 13 12 40 40 H 1.09002 * 109.58743 * 186.35346 * 25 13 12 41 41 H 1.08998 * 109.49676 * 298.56432 * 26 10 9 42 42 H 1.08993 * 109.49915 * 58.66714 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.1804 -4.7522 0.6103 12 6 1.9619 -6.0695 0.6404 13 7 2.4415 -6.3659 -0.7164 14 6 2.1735 -7.5531 -1.2953 15 8 1.4413 -8.3489 -0.7396 16 6 2.7691 -7.8874 -2.6041 17 6 4.1108 -7.5726 -2.8635 18 6 4.6644 -7.8778 -4.0679 19 6 3.9069 -8.5089 -5.0632 20 16 4.3549 -9.0146 -6.6881 21 6 2.7502 -9.6425 -7.0089 22 6 1.9526 -9.4793 -5.9732 23 6 2.5660 -8.8315 -4.8241 24 6 2.0010 -8.5116 -3.5749 25 6 3.2238 -5.3458 -1.4278 26 6 2.4234 -4.0345 -1.4368 27 1 -0.4851 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0002 29 1 2.9684 -3.5504 0.5905 30 1 0.2814 -4.8763 0.0066 31 1 0.9008 -4.4718 1.6259 32 1 1.3098 -6.8736 0.9813 33 1 2.8121 -5.9770 1.3163 34 1 4.7063 -7.0867 -2.1048 35 1 5.6987 -7.6319 -4.2584 36 1 2.4529 -10.1049 -7.9385 37 1 0.9218 -9.8017 -5.9770 38 1 0.9666 -8.7486 -3.3742 39 1 4.1748 -5.1930 -0.9175 40 1 3.4045 -5.6723 -2.4519 41 1 1.5127 -4.1655 -2.0212 42 1 3.0289 -3.2431 -1.8783 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997135708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:31:19 Heat of formation + Delta-G solvation = 27.917416 kcal Electronic energy + Delta-G solvation = -25085.612879 eV Core-core repulsion = 21543.171474 eV Total energy + Delta-G solvation = -3542.441405 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = -0.42 seconds Orbital eigenvalues (eV) -40.69453 -39.16108 -37.34593 -35.56675 -34.47487 -32.17347 -31.46593 -30.86931 -29.70103 -29.09889 -25.51140 -24.20955 -23.56953 -22.92177 -22.42531 -21.39616 -20.15876 -19.05757 -18.27392 -17.29115 -17.05802 -16.26191 -15.96476 -15.47899 -15.03080 -14.83879 -14.48502 -14.07183 -13.98881 -13.93615 -13.74862 -13.51928 -13.44942 -13.03586 -12.95065 -12.61427 -12.29063 -11.95094 -11.67641 -11.55162 -11.35086 -11.09120 -10.96953 -10.88622 -10.82127 -10.49824 -10.28219 -10.02583 -9.87279 -9.81699 -9.68483 -8.96172 -8.82695 -8.54801 -8.06465 -7.00070 -5.79480 -3.08900 0.35939 0.65929 1.16471 1.62603 1.91271 2.64543 2.98593 3.41303 3.45733 3.47052 3.47383 4.20475 4.37994 4.43636 4.55651 4.74792 4.88278 5.02408 5.08611 5.23898 5.30919 5.32857 5.36814 5.38507 5.50888 5.54662 5.61540 5.66731 5.69072 5.86047 5.92331 5.97399 5.98941 6.05748 6.20404 6.34289 6.36711 6.41896 6.49076 6.60715 6.86851 7.01933 7.43685 7.65599 8.13529 8.38699 9.49834 10.07370 10.41943 11.42992 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.002662 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.181338 B =10514.551013 C =11452.805162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.139 4.139 12 C 0.116 3.884 13 N -0.598 5.598 14 C 0.560 3.440 15 O -0.542 6.542 16 C -0.122 4.122 17 C -0.072 4.072 18 C -0.089 4.089 19 C -0.122 4.122 20 S 0.086 5.914 21 C -0.195 4.195 22 C -0.110 4.110 23 C -0.085 4.085 24 C -0.021 4.021 25 C 0.098 3.902 26 C -0.150 4.150 27 H 0.256 0.744 28 H 0.384 0.616 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.169 0.831 37 H 0.149 0.851 38 H 0.137 0.863 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.060 0.940 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.970 -20.406 -11.320 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.069 3.931 11 C -0.178 4.178 12 C -0.006 4.006 13 N -0.330 5.330 14 C 0.348 3.652 15 O -0.421 6.421 16 C -0.127 4.127 17 C -0.093 4.093 18 C -0.112 4.112 19 C -0.238 4.238 20 S 0.350 5.650 21 C -0.328 4.328 22 C -0.140 4.140 23 C -0.094 4.094 24 C -0.042 4.042 25 C -0.025 4.025 26 C -0.191 4.191 27 H 0.066 0.934 28 H 0.217 0.783 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.158 0.842 35 H 0.151 0.849 36 H 0.187 0.813 37 H 0.166 0.834 38 H 0.155 0.845 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.972 -20.607 -11.931 25.815 hybrid contribution -1.126 1.016 0.594 1.629 sum 8.846 -19.591 -11.338 24.302 Atomic orbital electron populations 1.69648 1.05139 1.25823 1.57426 1.24750 0.95494 0.97713 1.02922 0.86284 0.78539 0.83612 0.77833 1.21262 1.21713 1.21261 1.19181 0.90921 0.84096 1.43016 0.91219 1.42430 1.05812 0.99686 1.88498 1.20171 0.94445 0.86100 0.92419 1.22203 0.99248 0.94026 1.02305 1.21665 0.98864 0.98286 0.81816 1.48072 1.53571 1.14386 1.16960 1.18193 0.80589 0.81703 0.84696 1.90776 1.37200 1.49308 1.64815 1.19695 0.95082 1.02917 0.95011 1.20999 0.94018 0.97444 0.96886 1.20118 0.99684 0.99359 0.92002 1.22939 0.97381 1.04619 0.98877 1.84191 1.11979 1.61473 1.07379 1.25029 0.97001 1.07364 1.03452 1.20971 1.01134 1.00462 0.91427 1.19228 0.92650 1.02270 0.95207 1.21000 0.99862 0.93436 0.89860 1.22282 0.94459 0.88784 0.96972 1.22760 1.00046 0.94575 1.01760 0.93421 0.78252 0.93389 0.91777 0.90459 0.89232 0.91325 0.84211 0.84880 0.81349 0.83377 0.84495 0.91253 0.89684 0.92156 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.72 -17.59 5.12 -53.38 -0.27 -17.86 16 10 C 0.18 3.35 2.73 -67.88 -0.19 3.16 16 11 C -0.14 -2.26 5.55 -26.61 -0.15 -2.41 16 12 C 0.12 1.63 6.44 -3.71 -0.02 1.60 16 13 N -0.60 -8.28 2.97 -173.69 -0.52 -8.80 16 14 C 0.56 8.23 7.28 -12.43 -0.09 8.14 16 15 O -0.54 -9.57 16.36 5.29 0.09 -9.49 16 16 C -0.12 -1.51 5.05 -105.16 -0.53 -2.04 16 17 C -0.07 -0.73 7.31 -39.63 -0.29 -1.02 16 18 C -0.09 -0.84 9.99 -39.68 -0.40 -1.24 16 19 C -0.12 -1.26 6.49 -38.23 -0.25 -1.51 16 20 S 0.09 0.72 23.23 -107.50 -2.50 -1.77 16 21 C -0.19 -1.48 11.01 28.85 0.32 -1.16 16 22 C -0.11 -0.96 10.39 -38.58 -0.40 -1.36 16 23 C -0.09 -0.92 6.03 -105.41 -0.64 -1.56 16 24 C -0.02 -0.25 9.69 -38.47 -0.37 -0.62 16 25 C 0.10 1.25 4.96 -3.49 -0.02 1.23 16 26 C -0.15 -2.49 5.67 -26.38 -0.15 -2.64 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.38 10.07 7.80 -40.82 -0.32 9.76 16 29 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.09 1.29 7.00 -51.93 -0.36 0.93 16 33 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 34 H 0.14 1.19 6.73 -52.49 -0.35 0.84 16 35 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 36 H 0.17 0.82 8.06 -52.49 -0.42 0.39 16 37 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 40 H 0.09 0.97 4.81 -51.93 -0.25 0.72 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 357.26 15.07 5.38 5.38 Total: -1.00 -32.09 357.26 -11.01 -43.10 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -5.48 Total: 8.12 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -3.42 Total: -8.51 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.06 Total: -53.79 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.50 Total: -1.77 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.09 -11.01 -43.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997135708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.018 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.42 seconds