Wall clock time and date at job start Sat Apr 11 2020 02:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86801 * 120.00040 * 2 1 4 4 H 1.48499 * 109.47289 * 240.00033 * 3 2 1 5 5 H 1.48496 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47168 * 120.00087 * 3 2 1 7 7 C 1.38814 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00305 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99450 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99430 * 179.97438 * 9 7 2 11 11 C 1.53045 * 109.45726 * 155.00399 * 10 9 7 12 12 C 1.53189 * 109.31500 * 181.38441 * 11 10 9 13 13 N 1.46931 * 108.77522 * 305.36605 * 12 11 10 14 14 C 1.34776 * 120.62861 * 233.58733 * 13 12 11 15 15 O 1.21582 * 119.99895 * 5.85127 * 14 13 12 16 16 C 1.47630 * 120.00088 * 185.85722 * 14 13 12 17 17 C 1.40238 * 119.94538 * 41.94939 * 16 14 13 18 18 C 1.36019 * 120.18623 * 180.02562 * 17 16 14 19 19 C 1.40106 * 120.66706 * 359.97438 * 18 17 16 20 20 S 1.75967 * 130.37044 * 180.02562 * 19 18 17 21 21 C 1.75279 * 92.22495 * 179.97438 * 20 19 18 22 22 C 1.31736 * 111.47071 * 0.02562 * 21 20 19 23 23 C 1.39967 * 120.02747 * 0.02562 * 19 18 17 24 24 C 1.38642 * 119.94608 * 221.96802 * 16 14 13 25 25 C 1.46921 * 118.73992 * 53.85607 * 13 12 11 26 26 C 1.53043 * 109.45980 * 275.06722 * 10 9 7 27 27 H 0.97005 * 120.00251 * 359.97438 * 1 2 3 28 28 H 0.96997 * 119.99755 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.46168 * 35.03037 * 10 9 7 30 30 H 1.08998 * 109.49883 * 61.42773 * 11 10 9 31 31 H 1.09002 * 109.52054 * 301.34990 * 11 10 9 32 32 H 1.08997 * 109.59164 * 185.57303 * 12 11 10 33 33 H 1.09008 * 109.70341 * 65.21376 * 12 11 10 34 34 H 1.07996 * 119.90445 * 0.04089 * 17 16 14 35 35 H 1.08005 * 119.66100 * 180.02562 * 18 17 16 36 36 H 1.07999 * 124.26297 * 180.02562 * 21 20 19 37 37 H 1.08005 * 122.55506 * 179.97438 * 22 21 20 38 38 H 1.08000 * 119.95495 * 0.27704 * 24 16 14 39 39 H 1.09006 * 109.58838 * 65.92610 * 25 13 12 40 40 H 1.09002 * 109.58743 * 186.35346 * 25 13 12 41 41 H 1.08998 * 109.49676 * 298.56432 * 26 10 9 42 42 H 1.08993 * 109.49915 * 58.66714 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.1804 -4.7522 0.6103 12 6 1.9619 -6.0695 0.6404 13 7 2.4415 -6.3659 -0.7164 14 6 2.1735 -7.5531 -1.2953 15 8 1.4413 -8.3489 -0.7396 16 6 2.7691 -7.8874 -2.6041 17 6 4.1108 -7.5726 -2.8635 18 6 4.6644 -7.8778 -4.0679 19 6 3.9069 -8.5089 -5.0632 20 16 4.3549 -9.0146 -6.6881 21 6 2.7502 -9.6425 -7.0089 22 6 1.9526 -9.4793 -5.9732 23 6 2.5660 -8.8315 -4.8241 24 6 2.0010 -8.5116 -3.5749 25 6 3.2238 -5.3458 -1.4278 26 6 2.4234 -4.0345 -1.4368 27 1 -0.4851 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0002 29 1 2.9684 -3.5504 0.5905 30 1 0.2814 -4.8763 0.0066 31 1 0.9008 -4.4718 1.6259 32 1 1.3098 -6.8736 0.9813 33 1 2.8121 -5.9770 1.3163 34 1 4.7063 -7.0867 -2.1048 35 1 5.6987 -7.6319 -4.2584 36 1 2.4529 -10.1049 -7.9385 37 1 0.9218 -9.8017 -5.9770 38 1 0.9666 -8.7486 -3.3742 39 1 4.1748 -5.1930 -0.9175 40 1 3.4045 -5.6723 -2.4519 41 1 1.5127 -4.1655 -2.0212 42 1 3.0289 -3.2431 -1.8783 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997135708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:31:17 Heat of formation + Delta-G solvation = 9.583913 kcal Electronic energy + Delta-G solvation = -25086.407879 eV Core-core repulsion = 21543.171474 eV Total energy + Delta-G solvation = -3543.236405 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.71529 -40.08311 -38.68912 -36.41809 -36.01009 -33.84651 -32.51652 -31.92512 -31.05285 -30.27791 -26.89886 -25.49163 -24.57030 -24.22162 -23.53078 -22.37613 -21.37875 -20.16476 -19.17298 -18.94166 -18.25798 -17.29002 -16.92836 -16.67816 -16.27420 -16.02175 -15.55906 -15.39364 -15.35159 -14.84992 -14.80955 -14.75810 -14.69474 -14.27230 -13.89793 -13.80310 -13.32042 -13.22789 -13.03388 -12.78959 -12.65885 -12.34598 -12.22033 -12.20111 -12.11166 -11.98704 -11.78432 -11.68002 -11.31498 -11.07153 -10.83229 -10.74578 -9.75492 -9.58966 -8.99406 -8.75253 -7.91880 -5.20797 -0.39270 -0.15875 0.49657 0.97022 1.22126 1.49105 1.51789 1.57633 1.59323 1.92670 2.57669 2.61852 3.31851 3.41693 3.59676 3.72108 3.80753 3.88647 4.05233 4.09329 4.14758 4.17079 4.33711 4.36884 4.39537 4.59122 4.60433 4.71415 4.77569 4.82981 4.84249 4.86490 4.95391 5.01236 5.06349 5.14479 5.21698 5.30294 5.34090 5.49027 5.54469 5.60000 5.65946 6.29067 6.31724 7.00547 7.35411 8.11413 8.34153 9.31751 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.002662 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.181338 B =10514.551013 C =11452.805162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.971 3.029 4 H -0.276 1.276 5 H -0.301 1.301 6 H -0.277 1.277 7 C -0.235 4.235 8 H 0.081 0.919 9 N -0.739 5.739 10 C 0.174 3.826 11 C -0.128 4.128 12 C 0.122 3.878 13 N -0.597 5.597 14 C 0.560 3.440 15 O -0.580 6.580 16 C -0.138 4.138 17 C -0.074 4.074 18 C -0.085 4.085 19 C -0.141 4.141 20 S 0.107 5.893 21 C -0.186 4.186 22 C -0.129 4.129 23 C -0.099 4.099 24 C -0.036 4.036 25 C 0.108 3.892 26 C -0.141 4.141 27 H 0.249 0.751 28 H 0.369 0.631 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.198 0.802 37 H 0.163 0.837 38 H 0.129 0.871 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.038 0.962 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.813 -21.279 -12.630 27.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.271 4.271 3 Si 0.801 3.199 4 H -0.202 1.202 5 H -0.227 1.227 6 H -0.203 1.203 7 C -0.366 4.366 8 H 0.099 0.901 9 N -0.378 5.378 10 C 0.066 3.934 11 C -0.167 4.167 12 C 0.000 4.000 13 N -0.328 5.328 14 C 0.350 3.650 15 O -0.461 6.461 16 C -0.143 4.143 17 C -0.096 4.096 18 C -0.107 4.107 19 C -0.256 4.256 20 S 0.371 5.629 21 C -0.320 4.320 22 C -0.158 4.158 23 C -0.107 4.107 24 C -0.057 4.057 25 C -0.014 4.014 26 C -0.182 4.182 27 H 0.058 0.942 28 H 0.200 0.800 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.177 0.823 35 H 0.179 0.821 36 H 0.215 0.785 37 H 0.181 0.819 38 H 0.147 0.853 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.057 0.943 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.876 -21.514 -13.257 28.362 hybrid contribution -1.993 1.169 0.913 2.484 sum 10.883 -20.345 -12.344 26.167 Atomic orbital electron populations 1.69821 1.06768 1.25970 1.59891 1.25568 0.96287 1.01169 1.04119 0.85237 0.77146 0.79269 0.78280 1.20224 1.22736 1.20298 1.19616 0.91556 0.84998 1.40470 0.90079 1.42681 1.05370 1.01126 1.88630 1.20431 0.94452 0.84565 0.94003 1.22062 0.98494 0.94639 1.01543 1.21604 0.99434 0.96389 0.82603 1.48120 1.53432 1.14447 1.16847 1.18566 0.79881 0.81380 0.85199 1.90749 1.38946 1.50492 1.65920 1.19614 0.96315 1.04450 0.93963 1.21161 0.93025 0.97625 0.97762 1.20453 1.00787 0.98134 0.91298 1.23305 0.97423 1.04671 1.00232 1.84131 1.12231 1.60833 1.05744 1.25433 0.96325 1.06086 1.04109 1.21167 1.02255 1.01234 0.91193 1.19464 0.93332 1.02579 0.95331 1.21041 0.99797 0.94108 0.90707 1.22312 0.94419 0.86154 0.98540 1.22546 0.99610 0.96629 0.99396 0.94224 0.79974 0.92643 0.93594 0.90676 0.89737 0.88805 0.82274 0.82147 0.78457 0.81923 0.85288 0.88261 0.87898 0.94296 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.61 13.06 21.65 0.28 -59.33 16 2 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 3 Si 0.97 45.32 29.55 68.60 2.03 47.35 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.23 -12.57 9.93 84.03 0.83 -11.74 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.74 -36.33 5.12 -322.80 -1.65 -37.98 16 10 C 0.17 6.40 2.73 45.02 0.12 6.52 16 11 C -0.13 -4.18 5.55 30.67 0.17 -4.01 16 12 C 0.12 3.29 6.44 86.36 0.56 3.85 16 13 N -0.60 -15.77 2.97 -821.69 -2.44 -18.21 16 14 C 0.56 16.24 7.28 86.72 0.63 16.87 16 15 O -0.58 -20.80 16.36 -3.98 -0.07 -20.87 16 16 C -0.14 -3.32 5.05 -20.22 -0.10 -3.42 16 17 C -0.07 -1.34 7.31 22.24 0.16 -1.18 16 18 C -0.08 -1.37 9.99 22.21 0.22 -1.15 16 19 C -0.14 -2.61 6.49 23.14 0.15 -2.46 16 20 S 0.11 1.51 23.23 -56.49 -1.31 0.20 16 21 C -0.19 -2.35 11.01 67.10 0.74 -1.62 16 22 C -0.13 -2.06 10.39 23.42 0.24 -1.82 16 23 C -0.10 -2.04 6.03 -20.37 -0.12 -2.17 16 24 C -0.04 -0.86 9.69 22.99 0.22 -0.63 16 25 C 0.11 2.49 4.96 86.51 0.43 2.92 16 26 C -0.14 -4.54 5.67 30.82 0.17 -4.37 16 27 H 0.25 14.90 8.31 -92.70 -0.77 14.13 16 28 H 0.37 20.03 7.80 -92.71 -0.72 19.31 16 29 H 0.06 1.98 8.08 -2.39 -0.02 1.96 16 30 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.08 2.42 7.00 -2.39 -0.02 2.40 16 33 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.16 2.15 6.73 -2.91 -0.02 2.13 16 35 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.20 1.23 8.06 -2.91 -0.02 1.21 16 37 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 38 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 39 H 0.10 1.79 8.13 -2.38 -0.02 1.77 16 40 H 0.10 2.09 4.81 -2.39 -0.01 2.08 16 41 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -70.74 357.26 2.07 -68.67 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.33 Total: 28.62 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 4.90 Total: -8.45 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -3.81 Total: -115.52 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.07 Total: -20.87 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -1.31 Total: 0.20 kcal Total: -70.74 2.07 -68.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997135708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.252 kcal (2) G-P(sol) polarization free energy of solvation -70.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds