Wall clock time and date at job start Sat Apr 11 2020 02:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53010 * 109.47325 * 307.21748 * 3 2 1 5 5 N 1.46496 * 109.46974 * 180.02562 * 4 3 2 6 6 C 1.46497 * 120.00531 * 287.37988 * 5 4 3 7 7 C 1.52998 * 109.47173 * 274.90642 * 6 5 4 8 8 C 1.52997 * 117.49377 * 246.18885 * 7 6 5 9 9 C 1.53000 * 117.49661 * 177.53348 * 7 6 5 10 10 C 1.34783 * 119.99694 * 107.38467 * 5 4 3 11 11 O 1.21547 * 119.99647 * 176.85737 * 10 5 4 12 12 C 1.47864 * 120.00044 * 356.85862 * 10 5 4 13 13 C 1.39674 * 120.09914 * 331.68716 * 12 10 5 14 14 C 1.38036 * 120.03643 * 179.97438 * 13 12 10 15 15 C 1.38185 * 120.24489 * 359.76609 * 14 13 12 16 16 C 1.39182 * 120.20188 * 0.50830 * 15 14 13 17 17 S 1.76188 * 120.02354 * 179.74084 * 16 15 14 18 18 C 1.76204 * 100.00241 * 264.77027 * 17 16 15 19 19 H 1.07996 * 119.99607 * 5.01416 * 18 17 16 20 20 C 1.38724 * 120.00116 * 185.00759 * 18 17 16 21 21 N 1.31628 * 120.00313 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00188 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47021 * 90.00047 * 22 20 18 24 24 H 1.48498 * 109.47306 * 210.00310 * 22 20 18 25 25 H 1.48500 * 109.46908 * 330.00323 * 22 20 18 26 26 C 1.38877 * 119.95274 * 359.46936 * 16 15 14 27 27 H 1.09004 * 109.46858 * 187.22148 * 3 2 1 28 28 H 1.08996 * 109.47217 * 67.22220 * 3 2 1 29 29 H 1.09001 * 109.46654 * 59.99876 * 4 3 2 30 30 H 1.08997 * 109.46617 * 300.00369 * 4 3 2 31 31 H 1.09003 * 109.46457 * 34.89968 * 6 5 4 32 32 H 1.09001 * 109.47171 * 154.89682 * 6 5 4 33 33 H 1.08994 * 115.55114 * 31.85902 * 7 6 5 34 34 H 1.09005 * 117.50368 * 0.02562 * 8 7 6 35 35 H 1.09002 * 117.49927 * 145.01872 * 8 7 6 36 36 H 1.09004 * 117.49818 * 214.97572 * 9 7 6 37 37 H 1.08998 * 117.50081 * 359.97438 * 9 7 6 38 38 H 1.08000 * 119.98222 * 359.97438 * 13 12 10 39 39 H 1.08005 * 119.88321 * 180.02562 * 14 13 12 40 40 H 1.08005 * 119.90191 * 180.27681 * 15 14 13 41 41 H 0.96993 * 120.00195 * 180.02562 * 21 20 18 42 42 H 1.08009 * 120.11720 * 180.24614 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -0.8716 1.1488 5 7 4.5834 -0.8704 1.1491 6 6 5.3168 -1.6046 0.1151 7 6 5.4662 -3.0676 0.5372 8 6 6.8781 -3.5764 0.8345 9 6 6.1579 -4.0183 -0.4419 10 6 5.2565 -0.1939 2.1008 11 8 6.4707 -0.2395 2.1352 12 6 4.5179 0.6037 3.1032 13 6 3.2747 1.1538 2.7827 14 6 2.5861 1.8977 3.7196 15 6 3.1197 2.0978 4.9785 16 6 4.3604 1.5591 5.3067 17 16 5.0395 1.8229 6.9109 18 6 6.0588 3.2228 6.5854 19 1 6.0392 3.6904 5.6120 20 6 6.8863 3.7245 7.5793 21 7 6.9105 3.1545 8.7655 22 14 7.9664 5.2090 7.2345 23 1 7.2241 6.4503 7.5715 24 1 9.1973 5.1285 8.0612 25 1 8.3364 5.2286 5.7964 26 6 5.0602 0.8089 4.3707 27 1 2.9708 1.0204 0.1292 28 1 2.9715 -0.3970 -0.9475 29 1 2.7555 -1.8913 1.0196 30 1 2.7549 -0.4738 2.0962 31 1 4.7687 -1.5521 -0.8257 32 1 6.3041 -1.1611 -0.0144 33 1 4.6497 -3.4695 1.1370 34 1 7.7006 -2.8688 0.7297 35 1 6.9905 -4.3134 1.6297 36 1 5.7967 -5.0458 -0.4859 37 1 6.5063 -3.6015 -1.3869 38 1 2.8519 0.9969 1.8014 39 1 1.6247 2.3215 3.4693 40 1 2.5741 2.6771 5.7087 41 1 7.4888 3.5055 9.4606 42 1 6.0214 0.3863 4.6239 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079541663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:30:07 Heat of formation + Delta-G solvation = 64.635049 kcal Electronic energy + Delta-G solvation = -24813.078923 eV Core-core repulsion = 21272.229714 eV Total energy + Delta-G solvation = -3540.849209 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -40.71835 -38.24658 -37.52630 -37.19168 -35.76902 -32.51885 -31.90015 -31.09071 -30.53197 -27.53655 -25.58513 -24.86691 -23.07842 -22.52862 -22.49575 -21.00830 -19.65932 -18.34746 -17.91148 -17.13724 -17.01248 -16.44273 -15.58367 -15.37204 -15.08783 -14.85737 -14.65926 -14.50701 -14.16234 -13.82424 -13.72311 -13.40635 -13.19234 -13.04618 -12.85862 -12.67325 -12.29248 -12.22992 -11.84481 -11.70032 -11.56686 -11.36732 -11.21495 -11.10241 -11.06510 -10.71005 -10.67978 -10.21866 -9.95690 -9.82370 -9.17077 -9.03153 -8.98749 -8.63446 -8.04630 -6.73743 -6.29868 -4.04228 1.13155 1.59183 2.27448 2.40585 2.64955 2.90092 3.18773 3.21996 3.27868 3.44065 3.58159 3.62096 3.98790 4.20986 4.35796 4.39921 4.46214 4.57921 4.68228 4.76933 4.81929 5.03138 5.06705 5.11814 5.13525 5.20842 5.25075 5.38094 5.42002 5.45355 5.51357 5.67383 5.75728 5.82033 5.90036 5.92127 5.98449 6.20246 6.28437 6.50365 6.58026 6.87507 7.11129 7.15949 7.19568 7.56813 8.12263 8.31810 9.16262 10.76864 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.012144 B = 0.003285 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.086373 B = 8520.266694 C = 9996.165889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.206 3.794 3 C -0.054 4.054 4 C 0.086 3.914 5 N -0.608 5.608 6 C 0.144 3.856 7 C -0.172 4.172 8 C -0.170 4.170 9 C -0.178 4.178 10 C 0.568 3.432 11 O -0.520 6.520 12 C -0.152 4.152 13 C -0.118 4.118 14 C -0.139 4.139 15 C -0.056 4.056 16 C -0.103 4.103 17 S -0.035 6.035 18 C -0.519 4.519 19 H 0.076 0.924 20 C 0.074 3.926 21 N -0.871 5.871 22 Si 0.921 3.079 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.270 1.270 26 C -0.021 4.021 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.136 0.864 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.270 0.730 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.439 -10.239 -19.123 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.113 4.113 3 C -0.095 4.095 4 C -0.039 4.039 5 N -0.341 5.341 6 C 0.022 3.978 7 C -0.191 4.191 8 C -0.207 4.207 9 C -0.215 4.215 10 C 0.358 3.642 11 O -0.395 6.395 12 C -0.157 4.157 13 C -0.137 4.137 14 C -0.159 4.159 15 C -0.077 4.077 16 C -0.214 4.214 17 S 0.200 5.800 18 C -0.667 4.667 19 H 0.094 0.906 20 C -0.135 4.135 21 N -0.506 5.506 22 Si 0.747 3.253 23 H -0.202 1.202 24 H -0.206 1.206 25 H -0.195 1.195 26 C -0.042 4.042 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.103 0.897 30 H 0.139 0.861 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.153 0.847 39 H 0.141 0.859 40 H 0.149 0.851 41 H 0.080 0.920 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.512 -10.818 -17.864 22.194 hybrid contribution 1.215 1.494 -1.375 2.366 sum -6.297 -9.324 -19.240 22.288 Atomic orbital electron populations 1.81280 1.12772 1.08122 1.07912 1.28827 0.94864 0.93738 0.93832 1.19838 0.82209 1.04548 1.02896 1.22201 0.80654 1.00888 1.00145 1.47671 1.05627 1.51232 1.29571 1.21067 0.98300 0.89072 0.89404 1.22699 0.97268 0.95076 1.04101 1.23022 0.95342 1.03517 0.98795 1.22947 1.04665 0.99383 0.94540 1.18514 0.87072 0.78306 0.80309 1.90792 1.13476 1.62750 1.72511 1.19792 0.96414 1.03959 0.95507 1.21824 0.93845 0.97724 1.00277 1.21101 1.00397 1.00232 0.94174 1.21971 0.94726 0.95344 0.95688 1.22857 0.96934 0.98746 1.02821 1.83608 1.55264 1.41489 0.99673 1.22837 1.28000 1.13990 1.01852 0.90554 1.24999 0.96198 0.97814 0.94525 1.69983 1.37840 1.39850 1.02909 0.86121 0.79319 0.81236 0.78674 1.20167 1.20645 1.19487 1.21903 0.98459 0.93441 0.90432 0.86358 0.86511 0.89704 0.86063 0.90104 0.89059 0.87699 0.88283 0.88981 0.88881 0.88740 0.84654 0.85918 0.85083 0.92044 0.84562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.63 18.54 42.15 0.78 -3.85 16 2 C 0.21 1.56 15.36 -20.76 -0.32 1.24 16 3 C -0.05 -0.25 4.96 -29.51 -0.15 -0.40 16 4 C 0.09 0.57 4.87 -4.04 -0.02 0.56 16 5 N -0.61 -5.73 2.53 -174.79 -0.44 -6.18 16 6 C 0.14 1.13 5.66 -4.04 -0.02 1.11 16 7 C -0.17 -1.41 6.01 -90.62 -0.54 -1.95 16 8 C -0.17 -1.56 10.18 -26.70 -0.27 -1.83 16 9 C -0.18 -1.22 10.25 -26.70 -0.27 -1.49 16 10 C 0.57 8.11 7.46 -12.32 -0.09 8.02 16 11 O -0.52 -9.36 16.21 5.32 0.09 -9.27 16 12 C -0.15 -2.34 5.49 -105.00 -0.58 -2.91 16 13 C -0.12 -1.48 7.41 -39.12 -0.29 -1.77 16 14 C -0.14 -1.89 10.02 -39.67 -0.40 -2.29 16 15 C -0.06 -0.97 9.79 -39.25 -0.38 -1.35 16 16 C -0.10 -2.12 5.45 -38.99 -0.21 -2.33 16 17 S -0.03 -0.88 21.41 -107.50 -2.30 -3.19 16 18 C -0.52 -14.50 9.46 30.91 0.29 -14.20 16 19 H 0.08 2.12 7.79 -52.49 -0.41 1.71 16 20 C 0.07 2.05 5.49 -17.46 -0.10 1.95 16 21 N -0.87 -25.24 13.22 55.49 0.73 -24.51 16 22 Si 0.92 21.33 29.55 -169.99 -5.02 16.30 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 C -0.02 -0.40 9.34 -38.92 -0.36 -0.76 16 27 H 0.12 0.52 6.84 -51.93 -0.36 0.16 16 28 H 0.12 0.27 7.25 -51.93 -0.38 -0.11 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.12 1.00 4.13 -51.93 -0.21 0.78 16 31 H 0.08 0.38 7.16 -51.93 -0.37 0.01 16 32 H 0.09 0.88 7.06 -51.93 -0.37 0.52 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.10 1.01 8.04 -51.93 -0.42 0.59 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.14 1.19 2.81 -52.49 -0.15 1.04 16 39 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 40 H 0.13 2.17 8.06 -52.48 -0.42 1.75 16 41 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.14 2.84 7.90 -52.48 -0.41 2.43 16 LS Contribution 374.09 15.07 5.64 5.64 Total: -1.00 -33.77 374.09 -9.41 -43.18 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.17 Total: 0.28 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -3.72 Total: -18.41 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 1.07 Total: -34.53 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.30 Total: -3.19 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.77 -9.41 -43.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079541663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.818 kcal (2) G-P(sol) polarization free energy of solvation -33.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds