Wall clock time and date at job start Sat Apr 11 2020 02:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53010 * 109.47325 * 307.21748 * 3 2 1 5 5 N 1.46496 * 109.46974 * 180.02562 * 4 3 2 6 6 C 1.46497 * 120.00531 * 287.37988 * 5 4 3 7 7 C 1.52998 * 109.47173 * 274.90642 * 6 5 4 8 8 C 1.52997 * 117.49377 * 246.18885 * 7 6 5 9 9 C 1.53000 * 117.49661 * 177.53348 * 7 6 5 10 10 C 1.34783 * 119.99694 * 107.38467 * 5 4 3 11 11 O 1.21547 * 119.99647 * 176.85737 * 10 5 4 12 12 C 1.47864 * 120.00044 * 356.85862 * 10 5 4 13 13 C 1.39674 * 120.09914 * 331.68716 * 12 10 5 14 14 C 1.38036 * 120.03643 * 179.97438 * 13 12 10 15 15 C 1.38185 * 120.24489 * 359.76609 * 14 13 12 16 16 C 1.39182 * 120.20188 * 0.50830 * 15 14 13 17 17 S 1.76188 * 120.02354 * 179.74084 * 16 15 14 18 18 C 1.76204 * 100.00241 * 264.77027 * 17 16 15 19 19 H 1.07996 * 119.99607 * 5.01416 * 18 17 16 20 20 C 1.38724 * 120.00116 * 185.00759 * 18 17 16 21 21 N 1.31628 * 120.00313 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00188 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47021 * 90.00047 * 22 20 18 24 24 H 1.48498 * 109.47306 * 210.00310 * 22 20 18 25 25 H 1.48500 * 109.46908 * 330.00323 * 22 20 18 26 26 C 1.38877 * 119.95274 * 359.46936 * 16 15 14 27 27 H 1.09004 * 109.46858 * 187.22148 * 3 2 1 28 28 H 1.08996 * 109.47217 * 67.22220 * 3 2 1 29 29 H 1.09001 * 109.46654 * 59.99876 * 4 3 2 30 30 H 1.08997 * 109.46617 * 300.00369 * 4 3 2 31 31 H 1.09003 * 109.46457 * 34.89968 * 6 5 4 32 32 H 1.09001 * 109.47171 * 154.89682 * 6 5 4 33 33 H 1.08994 * 115.55114 * 31.85902 * 7 6 5 34 34 H 1.09005 * 117.50368 * 0.02562 * 8 7 6 35 35 H 1.09002 * 117.49927 * 145.01872 * 8 7 6 36 36 H 1.09004 * 117.49818 * 214.97572 * 9 7 6 37 37 H 1.08998 * 117.50081 * 359.97438 * 9 7 6 38 38 H 1.08000 * 119.98222 * 359.97438 * 13 12 10 39 39 H 1.08005 * 119.88321 * 180.02562 * 14 13 12 40 40 H 1.08005 * 119.90191 * 180.27681 * 15 14 13 41 41 H 0.96993 * 120.00195 * 180.02562 * 21 20 18 42 42 H 1.08009 * 120.11720 * 180.24614 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -0.8716 1.1488 5 7 4.5834 -0.8704 1.1491 6 6 5.3168 -1.6046 0.1151 7 6 5.4662 -3.0676 0.5372 8 6 6.8781 -3.5764 0.8345 9 6 6.1579 -4.0183 -0.4419 10 6 5.2565 -0.1939 2.1008 11 8 6.4707 -0.2395 2.1352 12 6 4.5179 0.6037 3.1032 13 6 3.2747 1.1538 2.7827 14 6 2.5861 1.8977 3.7196 15 6 3.1197 2.0978 4.9785 16 6 4.3604 1.5591 5.3067 17 16 5.0395 1.8229 6.9109 18 6 6.0588 3.2228 6.5854 19 1 6.0392 3.6904 5.6120 20 6 6.8863 3.7245 7.5793 21 7 6.9105 3.1545 8.7655 22 14 7.9664 5.2090 7.2345 23 1 7.2241 6.4503 7.5715 24 1 9.1973 5.1285 8.0612 25 1 8.3364 5.2286 5.7964 26 6 5.0602 0.8089 4.3707 27 1 2.9708 1.0204 0.1292 28 1 2.9715 -0.3970 -0.9475 29 1 2.7555 -1.8913 1.0196 30 1 2.7549 -0.4738 2.0962 31 1 4.7687 -1.5521 -0.8257 32 1 6.3041 -1.1611 -0.0144 33 1 4.6497 -3.4695 1.1370 34 1 7.7006 -2.8688 0.7297 35 1 6.9905 -4.3134 1.6297 36 1 5.7967 -5.0458 -0.4859 37 1 6.5063 -3.6015 -1.3869 38 1 2.8519 0.9969 1.8014 39 1 1.6247 2.3215 3.4693 40 1 2.5741 2.6771 5.7087 41 1 7.4888 3.5055 9.4606 42 1 6.0214 0.3863 4.6239 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079541663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:30:06 Heat of formation + Delta-G solvation = 45.351949 kcal Electronic energy + Delta-G solvation = -24813.915101 eV Core-core repulsion = 21272.229714 eV Total energy + Delta-G solvation = -3541.685387 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.74032 -39.36380 -38.38777 -37.90847 -36.57625 -34.65091 -32.70755 -32.26947 -31.73266 -28.34253 -27.73792 -25.64327 -24.13803 -23.79649 -23.14475 -21.82711 -20.64825 -19.83576 -18.86379 -18.24140 -18.09516 -17.36318 -16.92898 -16.57798 -16.44903 -15.90328 -15.67169 -15.57331 -15.17747 -14.89681 -14.75883 -14.58946 -14.42667 -13.98570 -13.74022 -13.61838 -13.29191 -13.23254 -12.98654 -12.96525 -12.75294 -12.57115 -12.48240 -12.30860 -12.27226 -12.05312 -11.70405 -11.36929 -11.23626 -11.05774 -10.82093 -10.59462 -10.03683 -9.75796 -9.63874 -8.80209 -8.39124 -6.19052 -0.14184 0.23512 1.29498 1.37508 1.45622 1.58204 1.63187 1.79850 1.87467 1.99524 2.24214 2.72001 2.93874 2.96035 3.03180 3.41112 3.52930 3.80645 3.82255 3.92752 3.95608 4.02983 4.05731 4.20024 4.34102 4.40496 4.44995 4.54934 4.59439 4.69174 4.74253 4.80862 4.86684 4.91146 5.01762 5.09178 5.19581 5.27918 5.30441 5.33994 5.38761 5.50069 5.55470 5.84939 6.16033 6.22320 6.64336 7.01496 7.07447 8.67798 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.012144 B = 0.003285 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.086373 B = 8520.266694 C = 9996.165889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C 0.238 3.762 3 C -0.048 4.048 4 C 0.079 3.921 5 N -0.589 5.589 6 C 0.141 3.859 7 C -0.174 4.174 8 C -0.203 4.203 9 C -0.149 4.149 10 C 0.566 3.434 11 O -0.568 6.568 12 C -0.150 4.150 13 C -0.087 4.087 14 C -0.124 4.124 15 C -0.065 4.065 16 C -0.125 4.125 17 S -0.095 6.095 18 C -0.536 4.536 19 H 0.067 0.933 20 C 0.020 3.980 21 N -0.906 5.906 22 Si 0.991 3.009 23 H -0.262 1.262 24 H -0.272 1.272 25 H -0.269 1.269 26 C -0.045 4.045 27 H 0.132 0.868 28 H 0.157 0.843 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.183 0.817 39 H 0.168 0.832 40 H 0.132 0.868 41 H 0.274 0.726 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.374 -10.089 -23.309 26.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.162 5.162 2 C -0.080 4.080 3 C -0.088 4.088 4 C -0.044 4.044 5 N -0.320 5.320 6 C 0.019 3.981 7 C -0.193 4.193 8 C -0.240 4.240 9 C -0.187 4.187 10 C 0.355 3.645 11 O -0.448 6.448 12 C -0.155 4.155 13 C -0.105 4.105 14 C -0.143 4.143 15 C -0.086 4.086 16 C -0.237 4.237 17 S 0.140 5.860 18 C -0.683 4.683 19 H 0.085 0.915 20 C -0.185 4.185 21 N -0.542 5.542 22 Si 0.812 3.188 23 H -0.187 1.187 24 H -0.197 1.197 25 H -0.193 1.193 26 C -0.067 4.067 27 H 0.150 0.850 28 H 0.174 0.826 29 H 0.130 0.870 30 H 0.125 0.875 31 H 0.149 0.851 32 H 0.089 0.911 33 H 0.125 0.875 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.200 0.800 39 H 0.185 0.815 40 H 0.150 0.850 41 H 0.083 0.917 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.497 -10.695 -22.078 26.306 hybrid contribution 1.723 1.292 -0.226 2.165 sum -7.774 -9.403 -22.304 25.423 Atomic orbital electron populations 1.81346 1.14766 1.10156 1.09940 1.29122 0.94994 0.91893 0.91994 1.19969 0.80161 1.04999 1.03697 1.22365 0.78512 1.03223 1.00350 1.47601 1.06829 1.49375 1.28175 1.21325 0.98143 0.88175 0.90430 1.22751 0.96177 0.95665 1.04687 1.23004 0.96037 1.04059 1.00909 1.23016 1.02091 0.99720 0.93835 1.18392 0.86429 0.78709 0.80945 1.90781 1.15529 1.64590 1.73868 1.19920 0.97483 1.03973 0.94113 1.22339 0.91731 0.94555 1.01839 1.21530 1.01677 0.98949 0.92162 1.22032 0.93430 0.95419 0.97680 1.22474 0.98779 1.01971 1.00440 1.83467 1.55870 1.41409 1.05248 1.23061 1.28673 1.14987 1.01573 0.91510 1.25985 0.97470 1.00863 0.94166 1.70103 1.38770 1.41511 1.03858 0.85067 0.77563 0.77634 0.78501 1.18728 1.19699 1.19302 1.21590 0.97757 0.94860 0.92502 0.84994 0.82576 0.87042 0.87550 0.85143 0.91051 0.87521 0.90152 0.89955 0.87668 0.87142 0.80019 0.81489 0.85007 0.91708 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -8.86 18.54 20.01 0.37 -8.49 16 2 C 0.24 2.39 15.36 89.44 1.37 3.76 16 3 C -0.05 -0.14 4.96 28.79 0.14 0.00 16 4 C 0.08 0.65 4.87 86.38 0.42 1.07 16 5 N -0.59 -9.13 2.53 -825.20 -2.08 -11.21 16 6 C 0.14 1.71 5.66 86.38 0.49 2.20 16 7 C -0.17 -2.40 6.01 -10.80 -0.06 -2.46 16 8 C -0.20 -3.71 10.18 30.62 0.31 -3.40 16 9 C -0.15 -1.62 10.25 30.62 0.31 -1.30 16 10 C 0.57 15.65 7.46 86.79 0.65 16.30 16 11 O -0.57 -21.15 16.21 -3.86 -0.06 -21.22 16 12 C -0.15 -4.51 5.49 -20.11 -0.11 -4.62 16 13 C -0.09 -1.86 7.41 22.57 0.17 -1.70 16 14 C -0.12 -2.95 10.02 22.21 0.22 -2.73 16 15 C -0.06 -2.21 9.79 22.48 0.22 -1.99 16 16 C -0.13 -5.42 5.45 22.65 0.12 -5.30 16 17 S -0.09 -5.14 21.41 -56.49 -1.21 -6.35 16 18 C -0.54 -31.47 9.46 67.94 0.64 -30.83 16 19 H 0.07 3.90 7.79 -2.91 -0.02 3.87 16 20 C 0.02 1.17 5.49 84.84 0.47 1.64 16 21 N -0.91 -54.66 13.22 21.63 0.29 -54.38 16 22 Si 0.99 44.76 29.55 68.60 2.03 46.79 16 23 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 C -0.05 -1.84 9.34 22.70 0.21 -1.63 16 27 H 0.13 0.21 6.84 -2.39 -0.02 0.19 16 28 H 0.16 -0.55 7.25 -2.39 -0.02 -0.57 16 29 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.11 1.24 4.13 -2.39 -0.01 1.23 16 31 H 0.13 0.36 7.16 -2.39 -0.02 0.34 16 32 H 0.07 1.24 7.06 -2.39 -0.02 1.23 16 33 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.75 8.04 -2.38 -0.02 1.73 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.18 2.17 2.81 -2.91 -0.01 2.16 16 39 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 40 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 41 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.10 4.74 7.90 -2.91 -0.02 4.71 16 Total: -1.00 -82.93 374.09 5.96 -76.97 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 1.06 Total: 8.87 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 5.58 Total: -30.98 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -1.43 Total: -74.08 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.06 Total: -21.22 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: -5.14 SS G_CDS: -1.21 Total: -6.35 kcal Total: -82.93 5.96 -76.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079541663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.323 kcal (2) G-P(sol) polarization free energy of solvation -82.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds