Wall clock time and date at job start Sat Apr 11 2020 02:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99819 * 2 1 4 4 H 1.48497 * 109.46870 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47139 * 300.00280 * 3 2 1 6 6 H 1.48501 * 109.46836 * 60.00098 * 3 2 1 7 7 C 1.37873 * 120.00489 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00442 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99570 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47069 * 179.97438 * 9 7 2 11 11 C 1.46504 * 119.99542 * 89.99861 * 10 9 7 12 12 C 1.50703 * 109.46750 * 90.00687 * 11 10 9 13 13 C 1.38223 * 119.62264 * 95.02018 * 12 11 10 14 14 C 1.38628 * 119.16031 * 179.97438 * 13 12 11 15 15 C 1.38672 * 118.42475 * 359.97438 * 14 13 12 16 16 C 1.38186 * 119.15778 * 0.02562 * 15 14 13 17 17 N 1.31856 * 119.61279 * 274.99490 * 12 11 10 18 18 C 1.34778 * 120.00344 * 270.00164 * 10 9 7 19 19 O 1.21279 * 119.99745 * 179.97438 * 18 10 9 20 20 C 1.50697 * 119.99732 * 0.02562 * 18 10 9 21 21 C 1.53005 * 109.46973 * 180.02562 * 20 18 10 22 22 C 1.50697 * 109.46973 * 179.97438 * 21 20 18 23 23 C 1.33390 * 125.20245 * 90.00298 * 22 21 20 24 24 C 1.38430 * 114.91902 * 179.97438 * 23 22 21 25 25 C 1.33383 * 114.92105 * 359.97438 * 24 23 22 26 26 S 1.75880 * 125.20376 * 269.68993 * 22 21 20 27 27 H 0.96996 * 120.00180 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46972 * 60.00256 * 9 7 2 29 29 H 1.08994 * 109.47315 * 300.00106 * 9 7 2 30 30 H 1.08989 * 109.47587 * 330.00352 * 11 10 9 31 31 H 1.08996 * 109.46786 * 209.99760 * 11 10 9 32 32 H 1.07995 * 120.41821 * 359.95030 * 13 12 11 33 33 H 1.08006 * 120.78822 * 180.02562 * 14 13 12 34 34 H 1.07993 * 120.42192 * 179.97438 * 15 14 13 35 35 H 1.08001 * 119.60956 * 180.27218 * 16 15 14 36 36 H 1.08998 * 109.47413 * 299.99843 * 20 18 10 37 37 H 1.09002 * 109.47555 * 60.00016 * 20 18 10 38 38 H 1.09005 * 109.46807 * 299.99691 * 21 20 18 39 39 H 1.08994 * 109.47270 * 59.99502 * 21 20 18 40 40 H 1.08002 * 122.54504 * 359.94799 * 23 22 21 41 41 H 1.08003 * 122.53497 * 180.02562 * 24 23 22 42 42 H 1.07999 * 125.20159 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.6801 -4.1698 1.2664 12 6 1.7637 -5.2843 1.7016 13 6 2.0805 -6.5921 1.3854 14 6 1.2311 -7.6098 1.7909 15 6 0.0899 -7.2727 2.5030 16 6 -0.1612 -5.9429 2.7822 17 7 0.6693 -5.0006 2.3800 18 6 2.6402 -4.1243 -1.1695 19 8 3.4287 -5.0458 -1.1704 20 6 2.1500 -3.5507 -2.4740 21 6 2.7947 -4.3064 -3.6377 22 6 2.3041 -3.7331 -4.9422 23 6 2.8825 -2.7327 -5.6084 24 6 2.2514 -2.3754 -6.7876 25 6 1.1609 -3.0860 -7.0791 26 16 0.8856 -4.2859 -5.8229 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5566 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 2.6884 -3.3886 2.0264 31 1 3.6894 -4.5598 1.1351 32 1 2.9782 -6.8181 0.8291 33 1 1.4532 -8.6409 1.5585 34 1 -0.5944 -8.0397 2.8343 35 1 -1.0455 -5.6725 3.3401 36 1 1.0663 -3.6522 -2.5312 37 1 2.4196 -2.4960 -2.5313 38 1 3.8786 -4.2051 -3.5807 39 1 2.5248 -5.3608 -3.5802 40 1 3.7752 -2.2385 -5.2546 41 1 2.6151 -1.5820 -7.4237 42 1 0.5438 -2.9484 -7.9546 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264082425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:30:49 Heat of formation + Delta-G solvation = 25.194691 kcal Electronic energy + Delta-G solvation = -25145.260221 eV Core-core repulsion = 21602.700750 eV Total energy + Delta-G solvation = -3542.559471 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -40.06836 -39.00028 -37.71324 -35.16169 -33.46578 -32.72039 -32.18091 -31.40373 -28.73487 -27.51151 -26.25710 -24.46663 -23.32646 -22.83532 -22.41313 -21.46125 -19.09075 -18.33217 -17.13058 -16.87960 -16.35376 -16.24716 -15.61106 -15.52665 -15.28171 -15.20972 -14.71320 -14.36601 -13.77242 -13.44895 -13.08126 -13.03554 -12.79252 -12.70834 -12.47256 -12.30378 -11.93907 -11.76728 -11.65565 -11.55025 -11.47146 -11.19598 -10.91091 -10.76442 -10.68532 -10.44722 -10.15356 -9.77174 -9.65125 -9.26564 -9.12743 -8.76712 -8.51369 -8.44503 -8.34329 -7.77590 -6.13864 -4.21047 1.13351 1.30187 1.51127 1.76868 2.13801 2.88752 3.24199 3.31490 3.33808 3.38252 3.76955 4.26365 4.37234 4.60418 4.95612 4.97056 5.04016 5.15179 5.19528 5.25308 5.35113 5.38120 5.51773 5.55477 5.68446 5.71361 5.78733 5.91254 6.00956 6.03608 6.20233 6.23691 6.34934 6.35571 6.40573 6.45014 6.50717 6.66858 6.79450 6.92177 7.26773 7.53945 7.80690 8.09741 8.26438 8.35668 8.80592 8.97354 9.46207 10.93132 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.007523 B = 0.004639 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3721.235464 B = 6034.653616 C = 8729.841669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.237 3.763 10 N -0.585 5.585 11 C 0.167 3.833 12 C 0.121 3.879 13 C -0.152 4.152 14 C -0.084 4.084 15 C -0.182 4.182 16 C 0.095 3.905 17 N -0.464 5.464 18 C 0.519 3.481 19 O -0.577 6.577 20 C -0.128 4.128 21 C -0.033 4.033 22 C -0.156 4.156 23 C -0.145 4.145 24 C -0.129 4.129 25 C -0.224 4.224 26 S 0.087 5.913 27 H 0.264 0.736 28 H 0.036 0.964 29 H 0.047 0.953 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.138 0.862 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.152 0.848 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.226 -10.946 -5.413 12.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.576 4.576 8 H 0.079 0.921 9 C 0.117 3.883 10 N -0.315 5.315 11 C 0.042 3.958 12 C -0.018 4.018 13 C -0.173 4.173 14 C -0.110 4.110 15 C -0.202 4.202 16 C -0.063 4.063 17 N -0.173 5.173 18 C 0.308 3.692 19 O -0.459 6.459 20 C -0.168 4.168 21 C -0.072 4.072 22 C -0.274 4.274 23 C -0.175 4.175 24 C -0.160 4.160 25 C -0.359 4.359 26 S 0.350 5.650 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.156 0.844 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.169 0.831 36 H 0.107 0.893 37 H 0.127 0.873 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.158 0.842 41 H 0.154 0.846 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.177 -11.497 -4.989 12.534 hybrid contribution 1.284 1.339 -0.446 1.909 sum 1.461 -10.158 -5.436 11.613 Atomic orbital electron populations 1.69938 1.05985 1.27083 1.49641 1.24922 0.94805 0.99176 0.94789 0.86499 0.80137 0.83467 0.77715 1.19668 1.20890 1.20872 1.21500 0.93546 0.90443 1.52087 0.92057 1.19521 0.87445 0.82138 0.99182 1.48204 1.45455 1.34425 1.03405 1.20139 0.94734 0.93463 0.87419 1.21896 0.92980 0.94093 0.92876 1.22129 1.01406 0.93399 1.00347 1.21545 0.93947 0.99601 0.95891 1.22087 0.98686 0.98090 1.01340 1.22768 0.97910 0.88836 0.96769 1.67603 1.02880 1.37327 1.09535 1.20500 0.80650 0.82170 0.85909 1.90563 1.36558 1.30672 1.88088 1.21608 1.01827 1.02563 0.90830 1.19919 1.01020 0.99054 0.87236 1.24599 0.99244 1.02004 1.01519 1.20160 1.02818 0.98698 0.95825 1.20155 0.96205 1.01556 0.98065 1.25521 1.03461 1.02779 1.04164 1.84247 1.28256 1.36313 1.16167 0.92636 0.94633 0.93523 0.88553 0.89305 0.84412 0.85309 0.85315 0.83060 0.89297 0.87343 0.89387 0.90568 0.84199 0.84570 0.82277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.76 13.29 55.43 0.74 -24.02 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.54 -13.90 9.28 -34.44 -0.32 -14.22 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.24 5.68 4.97 -5.19 -0.03 5.66 16 10 N -0.59 -12.24 2.44 -176.44 -0.43 -12.67 16 11 C 0.17 3.15 5.72 -5.19 -0.03 3.12 16 12 C 0.12 2.14 6.36 -82.59 -0.53 1.62 16 13 C -0.15 -2.36 9.72 -39.44 -0.38 -2.74 16 14 C -0.08 -1.08 10.18 -39.28 -0.40 -1.48 16 15 C -0.18 -2.25 10.11 -39.44 -0.40 -2.65 16 16 C 0.09 1.38 11.18 -17.55 -0.20 1.19 16 17 N -0.46 -8.44 10.27 -9.47 -0.10 -8.54 16 18 C 0.52 10.39 7.67 -10.99 -0.08 10.30 16 19 O -0.58 -11.89 15.52 5.56 0.09 -11.80 16 20 C -0.13 -2.31 4.23 -27.88 -0.12 -2.43 16 21 C -0.03 -0.50 5.00 -27.88 -0.14 -0.64 16 22 C -0.16 -2.28 5.76 -36.00 -0.21 -2.49 16 23 C -0.15 -2.00 10.05 -41.21 -0.41 -2.42 16 24 C -0.13 -1.60 10.18 -41.21 -0.42 -2.02 16 25 C -0.22 -2.69 11.23 29.04 0.33 -2.36 16 26 S 0.09 1.16 23.33 -107.50 -2.51 -1.35 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.04 0.89 6.44 -51.93 -0.33 0.56 16 29 H 0.05 1.23 8.07 -51.93 -0.42 0.81 16 30 H 0.10 1.87 8.07 -51.93 -0.42 1.45 16 31 H 0.09 1.57 7.32 -51.93 -0.38 1.19 16 32 H 0.14 2.10 8.01 -52.49 -0.42 1.67 16 33 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 34 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.09 1.62 7.40 -51.93 -0.38 1.24 16 37 H 0.11 2.09 8.00 -51.93 -0.42 1.68 16 38 H 0.09 1.35 8.10 -51.93 -0.42 0.93 16 39 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 40 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.14 1.38 8.06 -52.48 -0.42 0.95 16 42 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -29.87 376.79 -10.68 -40.56 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.70 Total: 6.47 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -3.43 Total: -9.92 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.21 Total: -45.23 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.51 Total: -1.35 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.87 -10.68 -40.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264082425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.754 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds