Wall clock time and date at job start Sat Apr 11 2020 02:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29510 * 121.53427 * 2 1 4 4 S 1.69483 * 107.85103 * 180.19904 * 3 2 1 5 5 C 1.72012 * 96.02535 * 359.75950 * 4 3 2 6 6 C 1.50706 * 127.31773 * 179.97438 * 5 4 3 7 7 C 1.37907 * 105.36798 * 359.97438 * 5 4 3 8 8 C 1.47322 * 123.08988 * 179.97438 * 7 5 4 9 9 O 1.21623 * 120.00042 * 90.00367 * 8 7 5 10 10 N 1.34771 * 119.99924 * 269.99598 * 8 7 5 11 11 C 1.46503 * 120.00260 * 5.60447 * 10 8 7 12 12 C 1.50693 * 109.47331 * 270.00201 * 11 10 8 13 13 H 1.08002 * 120.00070 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00179 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00111 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00080 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47111 * 89.99911 * 16 14 12 18 18 H 1.48501 * 109.47432 * 209.99788 * 16 14 12 19 19 H 1.48502 * 109.47269 * 329.99991 * 16 14 12 20 20 C 1.39864 * 120.00355 * 185.60095 * 10 8 7 21 21 C 1.38893 * 120.06683 * 56.18805 * 20 10 8 22 22 C 1.38111 * 119.92508 * 180.02562 * 21 20 10 23 23 C 1.38282 * 120.07204 * 0.27154 * 22 21 20 24 24 C 1.50704 * 119.92911 * 179.70343 * 23 22 21 25 25 C 1.38285 * 120.14316 * 359.45098 * 23 22 21 26 26 C 1.38100 * 120.07189 * 0.54955 * 25 23 22 27 27 H 1.08995 * 109.47239 * 270.24069 * 1 2 3 28 28 H 1.09001 * 109.46382 * 30.24256 * 1 2 3 29 29 H 1.09001 * 109.46672 * 150.23337 * 1 2 3 30 30 H 1.08999 * 109.47216 * 270.04242 * 6 5 4 31 31 H 1.09001 * 109.47278 * 30.04207 * 6 5 4 32 32 H 1.09004 * 109.47193 * 150.04130 * 6 5 4 33 33 H 1.09011 * 109.46832 * 29.99707 * 11 10 8 34 34 H 1.08993 * 109.47611 * 149.99533 * 11 10 8 35 35 H 0.96998 * 120.00318 * 180.02562 * 15 14 12 36 36 H 1.07998 * 120.03875 * 0.02562 * 21 20 10 37 37 H 1.08006 * 119.96124 * 179.97438 * 22 21 20 38 38 H 1.08999 * 109.47162 * 90.00130 * 24 23 22 39 39 H 1.08996 * 109.47585 * 210.00201 * 24 23 22 40 40 H 1.08999 * 109.46908 * 330.00351 * 24 23 22 41 41 H 1.08006 * 119.96457 * 180.27381 * 25 23 22 42 42 H 1.08002 * 120.03654 * 179.74768 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1844 1.1039 0.0000 4 16 3.8311 0.7029 -0.0056 5 6 3.6019 -1.0018 -0.0008 6 6 4.6680 -2.0670 -0.0032 7 6 2.2353 -1.1869 0.0056 8 6 1.6039 -2.5179 0.0107 9 8 1.3479 -3.0654 1.0661 10 7 1.3098 -3.1287 -1.1541 11 6 1.7277 -2.5270 -2.4227 12 6 0.6448 -1.6061 -2.9228 13 1 -0.2642 -1.4818 -2.3529 14 6 0.8142 -0.9222 -4.1080 15 7 1.9212 -1.0731 -4.8018 16 14 -0.5285 0.2187 -4.7282 17 1 -0.3018 1.5859 -4.1948 18 1 -0.5003 0.2556 -6.2125 19 1 -1.8509 -0.2782 -4.2705 20 6 0.6057 -4.3372 -1.1518 21 6 -0.6326 -4.4199 -0.5282 22 6 -1.3252 -5.6148 -0.5272 23 6 -0.7845 -6.7295 -1.1414 24 6 -1.5399 -8.0335 -1.1326 25 6 0.4456 -6.6490 -1.7681 26 6 1.1432 -5.4572 -1.7726 27 1 -0.3633 0.0043 1.0276 28 1 -0.3632 0.8879 -0.5176 29 1 -0.3633 -0.8921 -0.5102 30 1 4.9211 -2.3256 -1.0314 31 1 5.5561 -1.6934 0.5066 32 1 4.2980 -2.9526 0.5136 33 1 2.6458 -1.9592 -2.2706 34 1 1.9041 -3.3129 -3.1570 35 1 2.0406 -0.5917 -5.6354 36 1 -1.0535 -3.5508 -0.0445 37 1 -2.2880 -5.6798 -0.0421 38 1 -2.1833 -8.0866 -2.0109 39 1 -0.8331 -8.8631 -1.1494 40 1 -2.1499 -8.0940 -0.2313 41 1 0.8632 -7.5203 -2.2507 42 1 2.1057 -5.3960 -2.2587 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292639708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:33:40 Heat of formation + Delta-G solvation = 23.314038 kcal Electronic energy + Delta-G solvation = -26457.317714 eV Core-core repulsion = 22914.676691 eV Total energy + Delta-G solvation = -3542.641022 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 4.07 seconds Orbital eigenvalues (eV) -40.35177 -38.84946 -37.46182 -35.28257 -33.04022 -32.81810 -31.40563 -30.59697 -29.26694 -27.93848 -27.54958 -25.91058 -23.46211 -22.72613 -22.06885 -21.28841 -20.06072 -18.24789 -17.69848 -16.87685 -16.56383 -15.99102 -15.17263 -15.03239 -14.63717 -14.48381 -14.04073 -13.79540 -13.65360 -13.51865 -13.12165 -13.09822 -12.96550 -12.87797 -12.36876 -12.27214 -12.09743 -11.86073 -11.79821 -11.72296 -11.51751 -11.30775 -11.06651 -10.86602 -10.82612 -10.72490 -10.33390 -10.19025 -9.88250 -9.45160 -8.95208 -8.70355 -8.59707 -8.53898 -8.15278 -7.51859 -6.23028 -4.29359 0.99201 1.65346 1.76791 1.80109 2.17066 2.68134 3.03997 3.21110 3.28284 3.30344 3.75710 4.13979 4.30985 4.72586 5.10989 5.13379 5.13695 5.18391 5.27053 5.36024 5.50874 5.54464 5.63496 5.70345 5.73958 5.77085 5.86175 5.86892 5.97094 6.00501 6.02931 6.09554 6.17692 6.38251 6.50060 6.57570 6.77146 6.86215 6.91071 7.04004 7.09311 7.20176 7.55025 7.70474 7.95822 8.01682 8.64205 8.78632 9.37433 10.84358 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.010135 B = 0.005587 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.990678 B = 5010.129504 C = 6450.837694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.178 3.822 3 N -0.469 5.469 4 S 0.252 5.748 5 C -0.140 4.140 6 C -0.082 4.082 7 C -0.180 4.180 8 C 0.595 3.405 9 O -0.543 6.543 10 N -0.546 5.546 11 C 0.239 3.761 12 C -0.533 4.533 13 H 0.064 0.936 14 C 0.070 3.930 15 N -0.889 5.889 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.271 1.271 20 C 0.172 3.828 21 C -0.108 4.108 22 C -0.109 4.109 23 C -0.109 4.109 24 C -0.107 4.107 25 C -0.109 4.109 26 C -0.124 4.124 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.265 0.735 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.120 0.880 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.672 -6.186 6.998 9.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.001 3.999 3 N -0.290 5.290 4 S 0.408 5.592 5 C -0.271 4.271 6 C -0.141 4.141 7 C -0.201 4.201 8 C 0.381 3.619 9 O -0.421 6.421 10 N -0.271 5.271 11 C 0.121 3.879 12 C -0.572 4.572 13 H 0.082 0.918 14 C -0.133 4.133 15 N -0.527 5.527 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.210 1.210 19 H -0.195 1.195 20 C 0.080 3.920 21 C -0.128 4.128 22 C -0.127 4.127 23 C -0.109 4.109 24 C -0.164 4.164 25 C -0.127 4.127 26 C -0.144 4.144 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.138 0.862 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.549 -4.273 7.349 8.641 hybrid contribution -1.459 -0.735 -0.824 1.829 sum 0.090 -5.008 6.526 8.226 Atomic orbital electron populations 1.20694 0.86613 1.05054 1.02623 1.21023 0.98654 0.86716 0.93554 1.76334 0.99654 1.25931 1.27033 1.83608 1.11478 0.95717 1.68408 1.25807 0.97114 1.02191 1.01955 1.20352 0.94669 0.95230 1.03831 1.19895 0.92272 0.95521 1.12365 1.17413 0.77680 0.83545 0.83302 1.90760 1.54499 1.65753 1.31130 1.45955 1.52773 1.19643 1.08749 1.19598 0.96459 0.93851 0.77967 1.21359 1.03085 1.25952 1.06764 0.91778 1.24853 0.95715 0.96539 0.96226 1.69898 1.25341 1.42138 1.15332 0.86604 0.82247 0.81294 0.78174 1.20270 1.20987 1.19547 1.17592 0.91130 0.85603 0.97670 1.21081 0.93314 0.98144 1.00227 1.20779 0.99534 0.92198 1.00221 1.19782 0.95736 0.95655 0.99731 1.20707 0.99573 0.94169 1.01954 1.20753 0.94775 0.97212 0.99988 1.21077 1.00227 0.91656 1.01427 0.90476 0.90060 0.89169 0.89252 0.90379 0.90206 0.94154 0.94098 0.92498 0.86289 0.86325 0.91610 0.91971 0.91981 0.86240 0.85899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.59 9.96 36.01 0.36 -1.23 16 2 C 0.18 3.55 6.75 -83.19 -0.56 2.99 16 3 N -0.47 -9.23 11.97 32.51 0.39 -8.84 16 4 S 0.25 4.24 23.69 -107.50 -2.55 1.69 16 5 C -0.14 -2.46 6.09 -34.43 -0.21 -2.67 16 6 C -0.08 -1.15 10.19 36.01 0.37 -0.78 16 7 C -0.18 -3.59 4.02 -105.95 -0.43 -4.02 16 8 C 0.59 12.39 5.40 -12.57 -0.07 12.32 16 9 O -0.54 -12.11 16.46 5.26 0.09 -12.03 16 10 N -0.55 -11.42 2.56 -115.97 -0.30 -11.72 16 11 C 0.24 5.57 4.84 -5.20 -0.03 5.55 16 12 C -0.53 -13.42 9.20 -34.44 -0.32 -13.74 16 13 H 0.06 1.61 6.17 -52.49 -0.32 1.29 16 14 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 15 N -0.89 -24.22 13.29 55.43 0.74 -23.49 16 16 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 C 0.17 3.38 5.18 -83.71 -0.43 2.94 16 21 C -0.11 -1.97 8.93 -39.39 -0.35 -2.32 16 22 C -0.11 -1.67 9.69 -39.61 -0.38 -2.06 16 23 C -0.11 -1.55 5.88 -104.59 -0.62 -2.16 16 24 C -0.11 -1.13 10.01 36.01 0.36 -0.77 16 25 C -0.11 -1.62 9.69 -39.61 -0.38 -2.00 16 26 C -0.12 -2.17 9.31 -39.39 -0.37 -2.54 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.09 1.73 5.52 -51.93 -0.29 1.45 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.15 7.85 -51.93 -0.41 0.74 16 33 H 0.04 0.99 6.56 -51.92 -0.34 0.65 16 34 H 0.04 1.00 7.31 -51.93 -0.38 0.62 16 35 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 36 H 0.12 2.19 8.04 -52.49 -0.42 1.77 16 37 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 40 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 41 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 42 H 0.12 2.05 7.79 -52.49 -0.41 1.64 16 LS Contribution 369.95 15.07 5.58 5.58 Total: -1.00 -29.82 369.95 -9.73 -39.55 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.50 Total: 2.42 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -3.15 Total: -8.74 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.83 Total: -44.04 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -2.55 Total: 1.69 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.82 -9.73 -39.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292639708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.865 kcal (2) G-P(sol) polarization free energy of solvation -29.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.07 seconds