Wall clock time and date at job start Sat Apr 11 2020 02:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29510 * 121.53427 * 2 1 4 4 S 1.69483 * 107.85103 * 180.19904 * 3 2 1 5 5 C 1.72012 * 96.02535 * 359.75950 * 4 3 2 6 6 C 1.50706 * 127.31773 * 179.97438 * 5 4 3 7 7 C 1.37907 * 105.36798 * 359.97438 * 5 4 3 8 8 C 1.47322 * 123.08988 * 179.97438 * 7 5 4 9 9 O 1.21623 * 120.00042 * 90.00367 * 8 7 5 10 10 N 1.34771 * 119.99924 * 269.99598 * 8 7 5 11 11 C 1.46503 * 120.00260 * 5.60447 * 10 8 7 12 12 C 1.50693 * 109.47331 * 270.00201 * 11 10 8 13 13 H 1.08002 * 120.00070 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00179 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00111 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00080 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47111 * 89.99911 * 16 14 12 18 18 H 1.48501 * 109.47432 * 209.99788 * 16 14 12 19 19 H 1.48502 * 109.47269 * 329.99991 * 16 14 12 20 20 C 1.39864 * 120.00355 * 185.60095 * 10 8 7 21 21 C 1.38893 * 120.06683 * 56.18805 * 20 10 8 22 22 C 1.38111 * 119.92508 * 180.02562 * 21 20 10 23 23 C 1.38282 * 120.07204 * 0.27154 * 22 21 20 24 24 C 1.50704 * 119.92911 * 179.70343 * 23 22 21 25 25 C 1.38285 * 120.14316 * 359.45098 * 23 22 21 26 26 C 1.38100 * 120.07189 * 0.54955 * 25 23 22 27 27 H 1.08995 * 109.47239 * 270.24069 * 1 2 3 28 28 H 1.09001 * 109.46382 * 30.24256 * 1 2 3 29 29 H 1.09001 * 109.46672 * 150.23337 * 1 2 3 30 30 H 1.08999 * 109.47216 * 270.04242 * 6 5 4 31 31 H 1.09001 * 109.47278 * 30.04207 * 6 5 4 32 32 H 1.09004 * 109.47193 * 150.04130 * 6 5 4 33 33 H 1.09011 * 109.46832 * 29.99707 * 11 10 8 34 34 H 1.08993 * 109.47611 * 149.99533 * 11 10 8 35 35 H 0.96998 * 120.00318 * 180.02562 * 15 14 12 36 36 H 1.07998 * 120.03875 * 0.02562 * 21 20 10 37 37 H 1.08006 * 119.96124 * 179.97438 * 22 21 20 38 38 H 1.08999 * 109.47162 * 90.00130 * 24 23 22 39 39 H 1.08996 * 109.47585 * 210.00201 * 24 23 22 40 40 H 1.08999 * 109.46908 * 330.00351 * 24 23 22 41 41 H 1.08006 * 119.96457 * 180.27381 * 25 23 22 42 42 H 1.08002 * 120.03654 * 179.74768 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1844 1.1039 0.0000 4 16 3.8311 0.7029 -0.0056 5 6 3.6019 -1.0018 -0.0008 6 6 4.6680 -2.0670 -0.0032 7 6 2.2353 -1.1869 0.0056 8 6 1.6039 -2.5179 0.0107 9 8 1.3479 -3.0654 1.0661 10 7 1.3098 -3.1287 -1.1541 11 6 1.7277 -2.5270 -2.4227 12 6 0.6448 -1.6061 -2.9228 13 1 -0.2642 -1.4818 -2.3529 14 6 0.8142 -0.9222 -4.1080 15 7 1.9212 -1.0731 -4.8018 16 14 -0.5285 0.2187 -4.7282 17 1 -0.3018 1.5859 -4.1948 18 1 -0.5003 0.2556 -6.2125 19 1 -1.8509 -0.2782 -4.2705 20 6 0.6057 -4.3372 -1.1518 21 6 -0.6326 -4.4199 -0.5282 22 6 -1.3252 -5.6148 -0.5272 23 6 -0.7845 -6.7295 -1.1414 24 6 -1.5399 -8.0335 -1.1326 25 6 0.4456 -6.6490 -1.7681 26 6 1.1432 -5.4572 -1.7726 27 1 -0.3633 0.0043 1.0276 28 1 -0.3632 0.8879 -0.5176 29 1 -0.3633 -0.8921 -0.5102 30 1 4.9211 -2.3256 -1.0314 31 1 5.5561 -1.6934 0.5066 32 1 4.2980 -2.9526 0.5136 33 1 2.6458 -1.9592 -2.2706 34 1 1.9041 -3.3129 -3.1570 35 1 2.0406 -0.5917 -5.6354 36 1 -1.0535 -3.5508 -0.0445 37 1 -2.2880 -5.6798 -0.0421 38 1 -2.1833 -8.0866 -2.0109 39 1 -0.8331 -8.8631 -1.1494 40 1 -2.1499 -8.0940 -0.2313 41 1 0.8632 -7.5203 -2.2507 42 1 2.1057 -5.3960 -2.2587 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292639708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:33:35 Heat of formation + Delta-G solvation = 8.662134 kcal Electronic energy + Delta-G solvation = -26457.953068 eV Core-core repulsion = 22914.676691 eV Total energy + Delta-G solvation = -3543.276377 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 3.28 seconds Orbital eigenvalues (eV) -41.86925 -40.18548 -38.92295 -36.91233 -34.72736 -34.34316 -32.71298 -31.86923 -30.70587 -29.39922 -29.19683 -27.15502 -25.23938 -24.11425 -23.45201 -22.65200 -21.46061 -19.72089 -19.19040 -18.58310 -18.30495 -17.58650 -16.56650 -16.44806 -16.27111 -15.90616 -15.53414 -15.20161 -15.03777 -14.52134 -14.50266 -14.43667 -14.32870 -14.25508 -14.09208 -13.56615 -13.49906 -13.29442 -13.14831 -13.10209 -12.95024 -12.81957 -12.66435 -12.47563 -12.23410 -12.12088 -11.93312 -11.75007 -11.70662 -11.04165 -10.64005 -10.36859 -10.19820 -9.82617 -9.55971 -8.97971 -8.22440 -6.34046 -0.44077 0.33256 0.38182 0.51861 0.73810 1.17892 1.35652 1.38025 1.44594 1.49851 2.18739 2.38872 2.85732 3.09631 3.38870 3.67933 3.90992 3.98915 4.08616 4.12045 4.22125 4.29516 4.46736 4.50995 4.52075 4.53279 4.56898 4.58258 4.73626 4.86273 4.91236 4.94852 4.96214 5.04767 5.09355 5.18178 5.23529 5.43773 5.51035 5.60815 5.69579 5.71839 5.77975 6.00872 6.16041 6.34912 6.73648 7.10694 7.35717 8.83350 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.010135 B = 0.005587 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.990678 B = 5010.129504 C = 6450.837694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.165 3.835 3 N -0.499 5.499 4 S 0.302 5.698 5 C -0.138 4.138 6 C -0.083 4.083 7 C -0.216 4.216 8 C 0.600 3.400 9 O -0.565 6.565 10 N -0.543 5.543 11 C 0.259 3.741 12 C -0.531 4.531 13 H 0.059 0.941 14 C 0.028 3.972 15 N -0.917 5.917 16 Si 0.939 3.061 17 H -0.278 1.278 18 H -0.281 1.281 19 H -0.265 1.265 20 C 0.130 3.870 21 C -0.127 4.127 22 C -0.111 4.111 23 C -0.101 4.101 24 C -0.105 4.105 25 C -0.107 4.107 26 C -0.138 4.138 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.027 0.973 34 H 0.025 0.975 35 H 0.266 0.734 36 H 0.105 0.895 37 H 0.146 0.854 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.152 0.848 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 -7.533 7.168 10.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.012 4.012 3 N -0.321 5.321 4 S 0.458 5.542 5 C -0.269 4.269 6 C -0.141 4.141 7 C -0.237 4.237 8 C 0.387 3.613 9 O -0.445 6.445 10 N -0.268 5.268 11 C 0.140 3.860 12 C -0.569 4.569 13 H 0.078 0.922 14 C -0.173 4.173 15 N -0.557 5.557 16 Si 0.765 3.235 17 H -0.204 1.204 18 H -0.206 1.206 19 H -0.189 1.189 20 C 0.039 3.961 21 C -0.147 4.147 22 C -0.129 4.129 23 C -0.101 4.101 24 C -0.162 4.162 25 C -0.125 4.125 26 C -0.158 4.158 27 H 0.116 0.884 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.133 0.867 32 H 0.092 0.908 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.124 0.876 37 H 0.164 0.836 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.169 0.831 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.147 -5.639 7.523 9.471 hybrid contribution -1.295 -0.404 -0.842 1.596 sum -0.147 -6.043 6.681 9.010 Atomic orbital electron populations 1.20683 0.86126 1.04177 1.03770 1.21203 0.99398 0.86808 0.93813 1.76176 1.01499 1.26387 1.28017 1.83325 1.09379 0.94489 1.66999 1.26373 0.97159 1.03697 0.99644 1.20521 0.94935 0.94184 1.04461 1.19984 0.93419 0.95108 1.15141 1.17495 0.77192 0.83736 0.82886 1.90719 1.55640 1.66561 1.31614 1.45787 1.52857 1.20290 1.07821 1.19159 0.95399 0.92803 0.78659 1.21545 1.03192 1.25706 1.06483 0.92237 1.25479 0.97355 0.97849 0.96585 1.69982 1.26733 1.43224 1.15746 0.85817 0.80423 0.79534 0.77705 1.20414 1.20639 1.18922 1.17953 0.92212 0.85745 1.00197 1.21154 0.93484 0.99148 1.00936 1.21132 1.00325 0.91435 1.00004 1.20289 0.95374 0.96920 0.97515 1.20790 0.99902 0.92183 1.03279 1.21154 0.94841 0.97103 0.99429 1.21238 1.00686 0.92279 1.01607 0.88397 0.89747 0.90953 0.88824 0.86721 0.90778 0.95487 0.95722 0.92516 0.87637 0.83632 0.90308 0.90215 0.90519 0.83062 0.86107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.18 9.96 71.24 0.71 -2.47 16 2 C 0.16 6.67 6.75 43.15 0.29 6.96 16 3 N -0.50 -19.66 11.97 -51.07 -0.61 -20.27 16 4 S 0.30 9.90 23.69 -56.49 -1.34 8.56 16 5 C -0.14 -4.80 6.09 25.61 0.16 -4.64 16 6 C -0.08 -2.23 10.19 71.24 0.73 -1.50 16 7 C -0.22 -8.79 4.02 -20.72 -0.08 -8.87 16 8 C 0.60 25.84 5.40 86.63 0.47 26.30 16 9 O -0.57 -26.04 16.46 -4.10 -0.07 -26.11 16 10 N -0.54 -23.55 2.56 -639.07 -1.64 -25.19 16 11 C 0.26 12.47 4.84 85.63 0.41 12.89 16 12 C -0.53 -27.34 9.20 25.60 0.24 -27.11 16 13 H 0.06 3.08 6.17 -2.91 -0.02 3.06 16 14 C 0.03 1.46 5.46 84.66 0.46 1.93 16 15 N -0.92 -50.62 13.29 21.45 0.28 -50.34 16 16 Si 0.94 42.46 29.54 68.60 2.03 44.48 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 20 C 0.13 5.24 5.18 38.17 0.20 5.44 16 21 C -0.13 -4.74 8.93 22.40 0.20 -4.54 16 22 C -0.11 -3.25 9.69 22.25 0.22 -3.04 16 23 C -0.10 -2.61 5.88 -19.84 -0.12 -2.73 16 24 C -0.11 -1.78 10.01 71.24 0.71 -1.07 16 25 C -0.11 -2.99 9.69 22.25 0.22 -2.77 16 26 C -0.14 -4.87 9.31 22.39 0.21 -4.66 16 27 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 28 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 29 H 0.07 2.90 5.52 -2.39 -0.01 2.89 16 30 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.07 2.11 7.85 -2.38 -0.02 2.10 16 33 H 0.03 1.37 6.56 -2.38 -0.02 1.35 16 34 H 0.02 1.26 7.31 -2.39 -0.02 1.24 16 35 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 36 H 0.11 4.08 8.04 -2.91 -0.02 4.06 16 37 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 40 H 0.08 1.11 8.08 -2.39 -0.02 1.10 16 41 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 42 H 0.12 4.15 7.79 -2.91 -0.02 4.12 16 Total: -1.00 -65.30 369.95 4.71 -60.60 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 1.04 Total: 18.15 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 5.01 Total: -9.88 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -1.96 Total: -95.80 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.07 Total: -26.11 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 9.90 SS G_CDS: -1.34 Total: 8.56 kcal Total: -65.30 4.71 -60.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292639708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.259 kcal (2) G-P(sol) polarization free energy of solvation -65.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.28 seconds