Wall clock time and date at job start Sat Apr 11 2020 02:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30820 * 119.23810 * 2 1 4 4 C 1.33759 * 121.72246 * 180.25904 * 3 2 1 5 5 C 1.40756 * 120.82142 * 179.71246 * 4 3 2 6 6 F 1.35098 * 120.12290 * 0.03081 * 5 4 3 7 7 C 1.36335 * 119.76247 * 180.02562 * 5 4 3 8 8 C 1.39304 * 121.06284 * 0.03618 * 7 5 4 9 9 C 1.36140 * 120.87657 * 359.97438 * 8 7 5 10 10 C 1.40555 * 119.66643 * 359.97438 * 9 8 7 11 11 C 1.40504 * 121.22692 * 179.97438 * 10 9 8 12 12 C 1.39033 * 117.96470 * 180.02562 * 11 10 9 13 13 C 1.47764 * 120.27057 * 179.97438 * 12 11 10 14 14 O 1.21565 * 120.00205 * 142.02519 * 13 12 11 15 15 N 1.34773 * 119.99845 * 322.02890 * 13 12 11 16 16 C 1.47578 * 134.49197 * 174.92024 * 15 13 12 17 17 C 1.53949 * 86.11779 * 204.63821 * 16 15 13 18 18 O 1.42897 * 113.74507 * 90.73980 * 17 16 15 19 19 C 1.50698 * 113.74219 * 221.93889 * 17 16 15 20 20 H 1.07997 * 120.00053 * 358.07926 * 19 17 16 21 21 C 1.37882 * 119.99892 * 178.07307 * 19 17 16 22 22 N 1.31508 * 120.00124 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 119.99931 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47237 * 89.99897 * 23 21 19 25 25 H 1.48496 * 109.47139 * 209.99745 * 23 21 19 26 26 H 1.48496 * 109.47093 * 330.00254 * 23 21 19 27 27 C 1.47935 * 134.50167 * 354.92149 * 15 13 12 28 28 H 1.09006 * 109.46498 * 264.21161 * 1 2 3 29 29 H 1.08998 * 109.47169 * 24.20303 * 1 2 3 30 30 H 1.08988 * 109.47568 * 144.21037 * 1 2 3 31 31 H 1.08000 * 119.46715 * 180.02562 * 7 5 4 32 32 H 1.08007 * 119.55718 * 179.97438 * 8 7 5 33 33 H 1.07990 * 120.16668 * 180.02562 * 9 8 7 34 34 H 1.07995 * 121.01535 * 0.04939 * 11 10 9 35 35 H 1.08999 * 113.77357 * 90.33837 * 16 15 13 36 36 H 1.09000 * 113.77149 * 318.93833 * 16 15 13 37 37 H 0.96696 * 114.00446 * 181.92630 * 18 17 16 38 38 H 0.97000 * 120.00259 * 180.02562 * 22 21 19 39 39 H 1.09004 * 113.86779 * 41.09812 * 27 15 13 40 40 H 1.08997 * 113.76575 * 269.60215 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1459 1.1415 0.0000 4 6 3.4823 1.1995 -0.0051 5 6 4.1503 2.4384 -0.0111 6 9 3.4436 3.5898 -0.0111 7 6 5.5133 2.4723 -0.0168 8 6 6.2615 1.2973 -0.0176 9 6 5.6512 0.0804 -0.0122 10 6 4.2476 0.0060 -0.0051 11 6 3.5838 -1.2323 0.0001 12 6 2.1935 -1.2267 0.0064 13 6 1.4435 -2.4998 0.0115 14 8 0.4229 -2.6015 0.6640 15 7 1.8910 -3.5484 -0.7073 16 6 1.4686 -4.9543 -0.8586 17 6 2.9254 -5.2386 -1.2673 18 8 3.7729 -5.5879 -0.1710 19 6 3.0549 -6.1834 -2.4341 20 1 2.1711 -6.6155 -2.8797 21 6 4.3017 -6.4962 -2.9329 22 7 5.3779 -5.9703 -2.3901 23 14 4.4621 -7.6668 -4.3797 24 1 4.4221 -6.8950 -5.6478 25 1 5.7518 -8.3969 -4.2851 26 1 3.3400 -8.6391 -4.3565 27 6 3.0029 -3.7525 -1.6615 28 1 -0.3632 -0.1037 1.0225 29 1 -0.3633 0.9373 -0.4213 30 1 -0.3634 -0.8335 -0.6009 31 1 6.0210 3.4255 -0.0210 32 1 7.3401 1.3525 -0.0226 33 1 6.2425 -0.8233 -0.0124 34 1 4.1366 -2.1600 -0.0004 35 1 0.7483 -5.1128 -1.6611 36 1 1.1747 -5.4280 0.0781 37 1 4.6952 -5.7386 -0.4193 38 1 6.2550 -6.1900 -2.7412 39 1 3.9330 -3.2673 -1.3654 40 1 2.7322 -3.5586 -2.6994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571452257.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:30:19 Heat of formation + Delta-G solvation = -36.101894 kcal Electronic energy + Delta-G solvation = -27831.509560 eV Core-core repulsion = 23720.078893 eV Total energy + Delta-G solvation = -4111.430667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.117 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.94354 -41.04452 -39.52248 -37.86182 -36.85473 -34.15562 -33.41743 -32.32695 -32.05872 -30.31587 -28.63988 -27.78462 -25.71694 -25.48616 -24.35577 -22.81900 -22.12280 -20.68070 -19.11850 -18.20841 -17.81001 -17.43821 -16.94771 -16.33892 -15.94087 -15.80603 -15.36001 -15.12150 -15.00426 -14.78195 -14.30566 -14.18701 -13.79630 -13.39381 -13.29943 -12.98872 -12.87691 -12.70026 -12.43344 -12.37095 -12.16888 -11.93088 -11.67407 -11.56887 -11.43761 -11.18099 -11.09441 -10.62181 -10.47297 -10.36951 -10.01261 -9.64108 -9.31490 -8.90387 -8.87107 -8.54442 -8.25793 -7.99729 -6.49548 -4.59344 0.08351 0.46302 1.65024 2.49515 3.08691 3.15091 3.17675 3.20459 3.35723 3.79044 3.87041 4.06266 4.11505 4.45345 4.49724 4.63924 4.67493 4.74766 4.90354 4.93911 5.19585 5.37051 5.45218 5.55579 5.67127 5.74321 5.76741 5.81561 5.86587 5.95971 6.04422 6.13350 6.15717 6.22548 6.35829 6.37709 6.45303 6.52446 6.63483 6.96684 7.53466 7.70536 7.72407 8.24744 8.44181 8.52484 9.11930 9.29339 10.57509 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.014356 B = 0.003653 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.908729 B = 7662.925593 C = 9002.035487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.208 3.792 3 N -0.476 5.476 4 C 0.114 3.886 5 C 0.116 3.884 6 F -0.125 7.125 7 C -0.133 4.133 8 C -0.104 4.104 9 C -0.088 4.088 10 C -0.093 4.093 11 C -0.015 4.015 12 C -0.160 4.160 13 C 0.575 3.425 14 O -0.548 6.548 15 N -0.625 5.625 16 C 0.115 3.885 17 C 0.240 3.760 18 O -0.572 6.572 19 C -0.538 4.538 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.899 5.899 23 Si 0.907 3.093 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.270 1.270 27 C 0.074 3.926 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.159 0.841 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.392 0.608 38 H 0.274 0.726 39 H 0.070 0.930 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.458 12.001 1.948 12.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.055 3.945 3 N -0.185 5.185 4 C -0.009 4.009 5 C 0.096 3.904 6 F -0.103 7.103 7 C -0.154 4.154 8 C -0.122 4.122 9 C -0.107 4.107 10 C -0.095 4.095 11 C -0.041 4.041 12 C -0.165 4.165 13 C 0.364 3.636 14 O -0.428 6.428 15 N -0.358 5.358 16 C -0.007 4.007 17 C 0.198 3.802 18 O -0.384 6.384 19 C -0.576 4.576 20 H 0.090 0.910 21 C -0.129 4.129 22 N -0.539 5.539 23 Si 0.734 3.266 24 H -0.203 1.203 25 H -0.209 1.209 26 H -0.195 1.195 27 C -0.048 4.048 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.159 0.841 32 H 0.156 0.844 33 H 0.160 0.840 34 H 0.177 0.823 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.247 0.753 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.088 13.051 2.720 13.376 hybrid contribution 1.214 -1.059 -1.160 1.985 sum 2.302 11.992 1.560 12.310 Atomic orbital electron populations 1.20828 0.87390 1.03288 1.04342 1.21502 0.97512 0.86107 0.89412 1.67811 1.07524 1.28290 1.14852 1.18871 0.90052 0.92019 0.99969 1.17101 0.89178 0.80250 1.03852 1.91514 1.78979 1.46316 1.93513 1.20908 0.91581 1.00674 1.02204 1.20677 1.00543 0.91098 0.99867 1.21170 0.92385 0.99152 0.97978 1.18604 0.94816 0.92868 1.03208 1.22278 0.93375 0.97951 0.90494 1.20961 0.94403 0.95344 1.05820 1.17527 0.83839 0.81810 0.80468 1.90742 1.24461 1.82911 1.44694 1.50251 1.32846 1.10461 1.42256 1.23505 0.98965 0.77405 1.00777 1.19837 0.85934 0.89005 0.85428 1.86066 1.25809 1.91431 1.35063 1.21488 0.93599 1.28162 1.14357 0.90953 1.25047 0.95400 0.95294 0.97131 1.69372 0.98605 1.43828 1.42050 0.86335 0.77913 0.80671 0.81670 1.20291 1.20862 1.19492 1.24571 0.87600 1.00663 0.92014 0.89125 0.90626 0.89850 0.84079 0.84365 0.84012 0.82341 0.89312 0.90787 0.75304 0.91626 0.91191 0.89692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.47 8.77 36.00 0.32 -1.16 16 2 C 0.21 3.45 6.81 -82.14 -0.56 2.89 16 3 N -0.48 -7.97 10.06 -6.89 -0.07 -8.04 16 4 C 0.11 1.76 6.61 -84.72 -0.56 1.20 16 5 C 0.12 1.57 7.30 -39.32 -0.29 1.28 16 6 F -0.12 -1.78 17.11 2.25 0.04 -1.74 16 7 C -0.13 -1.36 9.91 -39.87 -0.40 -1.75 16 8 C -0.10 -0.97 9.95 -39.94 -0.40 -1.36 16 9 C -0.09 -0.98 9.77 -39.46 -0.39 -1.37 16 10 C -0.09 -1.33 5.74 -106.82 -0.61 -1.94 16 11 C -0.01 -0.23 8.57 -38.43 -0.33 -0.56 16 12 C -0.16 -2.77 5.70 -104.83 -0.60 -3.37 16 13 C 0.58 11.24 7.04 -12.37 -0.09 11.15 16 14 O -0.55 -11.70 15.73 5.31 0.08 -11.62 16 15 N -0.63 -12.36 3.58 -179.15 -0.64 -13.00 16 16 C 0.11 2.33 8.23 -2.97 -0.02 2.31 16 17 C 0.24 5.31 1.40 -90.84 -0.13 5.18 16 18 O -0.57 -13.49 13.48 -35.23 -0.48 -13.96 16 19 C -0.54 -12.68 8.61 -34.44 -0.30 -12.98 16 20 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 21 C 0.07 1.74 5.40 -17.82 -0.10 1.64 16 22 N -0.90 -21.22 11.20 55.43 0.62 -20.60 16 23 Si 0.91 18.57 29.54 -169.99 -5.02 13.55 16 24 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 27 C 0.07 1.46 7.45 -2.77 -0.02 1.44 16 28 H 0.09 1.29 8.13 -51.93 -0.42 0.87 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.26 6.78 -51.94 -0.35 0.91 16 31 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 33 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.16 2.44 6.06 -52.49 -0.32 2.12 16 35 H 0.09 1.65 8.09 -51.93 -0.42 1.23 16 36 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.39 9.31 6.60 45.56 0.30 9.61 16 38 H 0.27 6.18 8.31 -40.82 -0.34 5.84 16 39 H 0.07 1.33 5.77 -51.93 -0.30 1.03 16 40 H 0.08 1.66 8.09 -51.93 -0.42 1.24 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -27.44 345.40 -8.31 -35.75 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -3.59 Total: 11.86 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -4.46 Total: 2.60 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: -0.09 Total: -41.64 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.39 Total: -25.58 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.55 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.44 -8.31 -35.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571452257.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.350 kcal (2) G-P(sol) polarization free energy of solvation -27.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds