Wall clock time and date at job start Sat Apr 11 2020 02:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99763 * 2 1 4 4 H 1.48505 * 109.46837 * 274.98554 * 3 2 1 5 5 H 1.48488 * 109.47513 * 34.98611 * 3 2 1 6 6 H 1.48503 * 109.47065 * 154.99078 * 3 2 1 7 7 C 1.37874 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99958 * 189.55596 * 7 2 1 9 9 C 1.50703 * 120.00167 * 9.55653 * 7 2 1 10 10 C 1.53121 * 109.52552 * 185.42894 * 9 7 2 11 11 C 1.53036 * 109.27760 * 182.37443 * 10 9 7 12 12 N 1.46839 * 109.52236 * 59.18159 * 11 10 9 13 13 C 1.46897 * 111.00004 * 174.15812 * 12 11 10 14 14 C 1.50703 * 109.47308 * 169.99907 * 13 12 11 15 15 C 1.36126 * 120.11023 * 260.00132 * 14 13 12 16 16 C 1.39277 * 121.08297 * 179.97438 * 15 14 13 17 17 C 1.36301 * 120.85268 * 0.27648 * 16 15 14 18 18 Cl 1.73605 * 120.20768 * 179.74355 * 17 16 15 19 19 C 1.40500 * 119.58582 * 359.50446 * 17 16 15 20 20 C 1.40738 * 121.39070 * 180.24140 * 19 17 16 21 21 C 1.36591 * 118.15479 * 180.22143 * 20 19 17 22 22 C 1.39319 * 119.94038 * 0.02562 * 21 20 19 23 23 N 1.31089 * 121.74916 * 0.02562 * 22 21 20 24 24 C 1.33692 * 121.31593 * 359.96149 * 23 22 21 25 25 C 1.46848 * 111.20086 * 298.25440 * 12 11 10 26 26 C 1.53035 * 109.52181 * 61.74203 * 25 12 11 27 27 H 0.97001 * 120.00484 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.52238 * 305.55299 * 9 7 2 29 29 H 1.08998 * 109.50264 * 62.43458 * 10 9 7 30 30 H 1.08997 * 109.53242 * 302.33763 * 10 9 7 31 31 H 1.08995 * 109.46278 * 299.16035 * 11 10 9 32 32 H 1.09001 * 109.44780 * 179.19208 * 11 10 9 33 33 H 1.09004 * 109.47548 * 50.00069 * 13 12 11 34 34 H 1.08996 * 109.47369 * 289.99819 * 13 12 11 35 35 H 1.07999 * 119.46170 * 0.02562 * 15 14 13 36 36 H 1.07998 * 119.56877 * 179.97438 * 16 15 14 37 37 H 1.07997 * 120.92326 * 0.25044 * 20 19 17 38 38 H 1.08000 * 120.03336 * 179.97438 * 21 20 19 39 39 H 1.07999 * 119.12623 * 179.97438 * 22 21 20 40 40 H 1.08999 * 109.46760 * 181.75851 * 25 12 11 41 41 H 1.09006 * 109.45932 * 301.73112 * 25 12 11 42 42 H 1.08997 * 109.50617 * 180.88580 * 26 25 12 43 43 H 1.08995 * 109.53978 * 60.78493 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3912 2.1072 -1.3948 5 1 1.5033 2.6199 0.8027 6 1 3.5954 1.4121 0.5919 7 6 2.0045 -1.1940 0.0005 8 1 3.0732 -1.2004 0.1558 9 6 1.2667 -2.4902 -0.2156 10 6 2.2322 -3.6649 -0.0347 11 6 1.4917 -4.9749 -0.3134 12 7 0.9639 -4.9584 -1.6835 13 6 0.3668 -6.2541 -2.0333 14 6 -0.3760 -6.1290 -3.3385 15 6 -1.7292 -5.9810 -3.3427 16 6 -2.4360 -5.8630 -4.5370 17 6 -1.7911 -5.8982 -5.7373 18 17 -2.6895 -5.7563 -7.2160 19 6 -0.3942 -6.0451 -5.7702 20 6 0.3106 -6.0811 -6.9878 21 6 1.6676 -6.2309 -6.9428 22 6 2.3144 -6.3435 -5.7140 23 7 1.6547 -6.3106 -4.5817 24 6 0.3258 -6.1661 -4.5556 25 6 -0.0015 -3.8673 -1.8676 26 6 0.6943 -2.5242 -1.6353 27 1 -0.4851 0.8400 -0.0004 28 1 0.4545 -2.5718 0.5067 29 1 2.6104 -3.6710 0.9875 30 1 3.0650 -3.5625 -0.7303 31 1 0.6679 -5.0836 0.3920 32 1 2.1802 -5.8123 -0.1994 33 1 -0.3260 -6.5587 -1.2488 34 1 1.1537 -7.0017 -2.1334 35 1 -2.2635 -5.9537 -2.4045 36 1 -3.5094 -5.7469 -4.5118 37 1 -0.2069 -5.9923 -7.9315 38 1 2.2385 -6.2629 -7.8590 39 1 3.3877 -6.4619 -5.6938 40 1 -0.3978 -3.9002 -2.8825 41 1 -0.8184 -3.9811 -1.1549 42 1 -0.0262 -1.7153 -1.7566 43 1 1.5025 -2.4028 -2.3565 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335313402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:31:10 Heat of formation + Delta-G solvation = 45.220540 kcal Electronic energy + Delta-G solvation = -25773.539750 eV Core-core repulsion = 22229.804958 eV Total energy + Delta-G solvation = -3543.734792 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.08479 -38.42989 -37.45044 -36.53183 -34.37146 -33.13617 -31.56108 -30.76889 -29.98492 -29.66044 -26.56117 -24.63868 -24.03947 -23.85808 -22.12865 -21.68161 -20.43805 -18.66780 -18.35140 -17.19113 -17.13078 -16.33709 -15.42552 -15.12640 -14.76025 -14.59607 -14.49830 -14.25692 -13.84875 -13.53530 -13.31351 -13.12483 -12.85139 -12.83532 -12.41441 -12.37435 -11.97248 -11.65256 -11.58360 -11.32372 -11.07746 -11.05959 -10.94640 -10.74378 -10.44204 -10.36300 -10.17461 -10.03255 -9.52532 -9.37696 -8.95974 -8.84828 -8.69423 -8.24840 -8.22181 -7.62810 -5.96061 -3.96309 0.17008 0.65585 1.77045 1.84654 2.72287 3.34334 3.41478 3.44766 3.91366 4.18710 4.43661 4.49552 4.52082 4.56035 4.64043 4.80389 4.90315 5.12429 5.21894 5.35209 5.37252 5.52755 5.65689 5.71905 5.78312 5.84390 5.92244 5.95350 6.05899 6.12650 6.22295 6.24992 6.35116 6.40468 6.60288 6.64020 6.69039 6.88394 7.12016 7.18927 7.42457 7.65071 7.73042 7.87327 7.88509 8.07692 8.10396 8.53211 9.07619 9.66509 11.13211 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.013857 B = 0.003323 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.163560 B = 8423.743008 C = 8804.132950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.105 4.105 11 C 0.062 3.938 12 N -0.519 5.519 13 C 0.099 3.901 14 C -0.033 4.033 15 C -0.099 4.099 16 C -0.094 4.094 17 C -0.024 4.024 18 Cl -0.067 7.067 19 C -0.097 4.097 20 C -0.062 4.062 21 C -0.169 4.169 22 C 0.130 3.870 23 N -0.440 5.440 24 C 0.152 3.848 25 C 0.056 3.944 26 C -0.097 4.097 27 H 0.258 0.742 28 H 0.027 0.973 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.024 0.976 32 H 0.059 0.941 33 H 0.036 0.964 34 H 0.088 0.912 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.161 0.839 40 H 0.054 0.946 41 H 0.022 0.978 42 H 0.072 0.928 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.266 -16.371 -13.485 21.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.713 3.287 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.028 3.972 10 C -0.142 4.142 11 C -0.066 4.066 12 N -0.243 5.243 13 C -0.028 4.028 14 C -0.034 4.034 15 C -0.119 4.119 16 C -0.113 4.113 17 C -0.052 4.052 18 Cl -0.038 7.038 19 C -0.100 4.100 20 C -0.088 4.088 21 C -0.189 4.189 22 C -0.043 4.043 23 N -0.147 5.147 24 C 0.030 3.970 25 C -0.071 4.071 26 C -0.135 4.135 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.106 0.894 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.178 0.822 40 H 0.072 0.928 41 H 0.040 0.960 42 H 0.090 0.910 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.735 -16.217 -13.033 20.984 hybrid contribution -0.869 1.057 -0.588 1.489 sum -3.604 -15.160 -13.621 20.697 Atomic orbital electron populations 1.69968 1.05913 1.26308 1.50735 1.24951 0.94728 0.98931 0.95175 0.86700 0.80114 0.83995 0.77935 1.20789 1.21421 1.19908 1.21193 0.94052 0.91070 1.48618 0.92756 1.18691 0.93965 0.91828 0.92680 1.21657 0.99230 0.93755 0.99598 1.22130 0.97747 0.99473 0.87235 1.62102 1.35721 1.01304 1.25211 1.20986 0.96942 0.94072 0.90796 1.19648 0.92978 0.96493 0.94281 1.20787 0.93542 0.99480 0.98139 1.20800 1.00930 0.99136 0.90447 1.20564 0.90856 1.05951 0.87836 1.98356 1.74289 1.96331 1.34806 1.18582 0.92435 1.03842 0.95115 1.21449 0.94611 0.95481 0.97267 1.21927 0.95155 1.01847 0.99993 1.23076 1.00731 0.93158 0.87366 1.68179 1.06695 1.10618 1.29200 1.18532 0.89670 0.97624 0.91177 1.22301 0.93101 0.93018 0.98717 1.21561 0.99364 0.92858 0.99727 0.93193 0.95469 0.93093 0.92531 0.95809 0.92257 0.94557 0.89378 0.84422 0.84432 0.84297 0.84442 0.82207 0.92758 0.95994 0.90967 0.93788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 12.20 55.43 0.68 -25.23 16 2 C 0.06 1.78 5.23 -17.82 -0.09 1.69 16 3 Si 0.88 21.64 29.55 -169.99 -5.02 16.62 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.28 8.48 -34.44 -0.29 -14.57 16 8 H 0.05 1.51 7.77 -52.49 -0.41 1.10 16 9 C 0.05 1.18 2.03 -91.65 -0.19 1.00 16 10 C -0.10 -2.23 5.32 -26.65 -0.14 -2.38 16 11 C 0.06 1.12 5.42 -3.84 -0.02 1.10 16 12 N -0.52 -9.39 4.80 -236.12 -1.13 -10.53 16 13 C 0.10 1.48 5.08 -4.98 -0.03 1.46 16 14 C -0.03 -0.47 3.71 -104.51 -0.39 -0.86 16 15 C -0.10 -1.22 8.51 -39.95 -0.34 -1.56 16 16 C -0.09 -1.08 9.73 -39.89 -0.39 -1.46 16 17 C -0.02 -0.29 6.32 -39.43 -0.25 -0.54 16 18 Cl -0.07 -0.69 27.56 -51.86 -1.43 -2.12 16 19 C -0.10 -1.27 5.74 -106.77 -0.61 -1.88 16 20 C -0.06 -0.68 9.53 -39.23 -0.37 -1.05 16 21 C -0.17 -1.63 10.03 -39.77 -0.40 -2.03 16 22 C 0.13 1.47 11.15 -17.47 -0.19 1.28 16 23 N -0.44 -6.44 9.60 -10.98 -0.11 -6.55 16 24 C 0.15 2.23 6.58 -84.86 -0.56 1.67 16 25 C 0.06 1.12 4.80 -3.83 -0.02 1.10 16 26 C -0.10 -2.32 5.19 -26.65 -0.14 -2.46 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.03 0.75 8.09 -51.93 -0.42 0.33 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 33 H 0.04 0.50 7.91 -51.93 -0.41 0.09 16 34 H 0.09 1.29 7.87 -51.93 -0.41 0.88 16 35 H 0.14 1.48 8.00 -52.49 -0.42 1.06 16 36 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.14 1.25 7.06 -52.49 -0.37 0.88 16 38 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.05 1.05 6.02 -51.93 -0.31 0.74 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 1.92 7.00 -51.93 -0.36 1.55 16 43 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 358.92 15.07 5.41 5.41 Total: -1.00 -30.76 358.92 -12.08 -42.84 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.05 Total: -0.93 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -4.42 Total: -19.51 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: -0.56 Total: -42.30 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.43 Total: -2.12 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.76 -12.08 -42.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335313402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.056 kcal (2) G-P(sol) polarization free energy of solvation -30.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds