Wall clock time and date at job start Sat Apr 11 2020 02:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35987 * 117.00176 * 2 1 4 4 C 1.38515 * 120.03889 * 0.25445 * 3 2 1 5 5 C 1.38797 * 119.93136 * 180.27743 * 4 3 2 6 6 N 1.40141 * 119.99659 * 179.76241 * 5 4 3 7 7 C 1.34775 * 120.00002 * 143.88260 * 6 5 4 8 8 O 1.21584 * 120.00210 * 4.54885 * 7 6 5 9 9 N 1.34773 * 119.99805 * 184.54152 * 7 6 5 10 10 C 1.46501 * 119.99953 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47244 * 34.72777 * 10 9 7 12 12 C 1.52995 * 109.47334 * 274.72300 * 10 9 7 13 13 C 1.50703 * 109.47307 * 154.72237 * 10 9 7 14 14 H 1.08004 * 119.99702 * 35.01209 * 13 10 9 15 15 C 1.37877 * 120.00372 * 215.00808 * 13 10 9 16 16 N 1.31512 * 119.99998 * 184.79900 * 15 13 10 17 17 Si 1.86798 * 119.99803 * 4.80301 * 15 13 10 18 18 H 1.48503 * 109.47092 * 84.86231 * 17 15 13 19 19 H 1.48501 * 109.47327 * 204.86222 * 17 15 13 20 20 H 1.48505 * 109.47080 * 324.86325 * 17 15 13 21 21 C 1.38831 * 120.00863 * 359.48945 * 5 4 3 22 22 C 1.38188 * 120.07706 * 0.22826 * 21 5 4 23 23 C 1.38553 * 120.06693 * 0.02634 * 22 21 5 24 24 O 1.36067 * 120.00188 * 179.97438 * 23 22 21 25 25 C 1.42895 * 117.00213 * 0.02562 * 24 23 22 26 26 F 1.39905 * 109.46913 * 299.99337 * 25 24 23 27 27 F 1.39895 * 109.47384 * 59.99892 * 25 24 23 28 28 H 1.09004 * 109.47037 * 60.00235 * 1 2 3 29 29 H 1.08998 * 109.47571 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47399 * 300.00456 * 1 2 3 31 31 H 1.07997 * 120.03159 * 0.02562 * 4 3 2 32 32 H 0.97007 * 119.99535 * 323.89404 * 6 5 4 33 33 H 0.97004 * 120.00537 * 359.72671 * 9 7 6 34 34 H 1.08997 * 109.47122 * 295.09104 * 12 10 9 35 35 H 1.09002 * 109.46667 * 55.08745 * 12 10 9 36 36 H 1.08994 * 109.47598 * 175.08342 * 12 10 9 37 37 H 0.97006 * 119.99772 * 180.02562 * 16 15 13 38 38 H 1.08005 * 119.96266 * 180.25690 * 21 5 4 39 39 H 1.08000 * 119.96786 * 180.02562 * 22 21 5 40 40 H 1.09011 * 109.47096 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2928 2.3739 0.0053 5 6 1.9252 3.6093 -0.0005 6 7 1.1641 4.7861 -0.0002 7 6 1.5928 5.8657 0.6833 8 8 2.6782 5.8470 1.2309 9 7 0.8184 6.9660 0.7596 10 6 1.2845 8.1398 1.5020 11 1 2.3648 8.2344 1.3912 12 6 0.9360 7.9782 2.9829 13 6 0.6140 9.3759 0.9601 14 1 -0.4060 9.3267 0.6083 15 6 1.3024 10.5696 0.9136 16 7 0.6892 11.6678 0.5298 17 14 3.1062 10.6268 1.3957 18 1 3.9433 10.2588 0.2255 19 1 3.4560 11.9991 1.8425 20 1 3.3535 9.6678 2.5022 21 6 3.3118 3.6796 -0.0010 22 6 4.0639 2.5204 -0.0004 23 6 3.4359 1.2854 0.0001 24 8 4.1778 0.1448 0.0002 25 6 5.5988 0.2952 0.0003 26 9 5.9932 1.0000 -1.1421 27 9 5.9931 1.0001 1.1425 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2142 2.3187 0.0099 32 1 0.3287 4.8234 -0.4917 33 1 -0.0459 6.9825 0.3193 34 1 -0.1474 7.9712 3.1025 35 1 1.3484 7.0394 3.3528 36 1 1.3586 8.8085 3.5485 37 1 1.1737 12.5076 0.4967 38 1 3.8031 4.6414 -0.0013 39 1 5.1424 2.5771 -0.0003 40 1 6.0683 -0.6887 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597114607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:29:52 Heat of formation + Delta-G solvation = -176.786578 kcal Electronic energy + Delta-G solvation = -28234.338616 eV Core-core repulsion = 23686.038179 eV Total energy + Delta-G solvation = -4548.300437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.122 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.51261 -47.50381 -40.81999 -39.67551 -38.48005 -37.17840 -35.00555 -34.04536 -32.38961 -30.40560 -30.18869 -28.88597 -27.27279 -26.00969 -25.33390 -23.04777 -22.60604 -21.12824 -19.94805 -19.31010 -18.80523 -18.46010 -18.07312 -17.64967 -16.76613 -16.33054 -16.15873 -15.98104 -15.53023 -15.09386 -14.68742 -14.56927 -14.31600 -14.15171 -14.01553 -13.82416 -13.80560 -13.35487 -13.31189 -12.92725 -12.55377 -12.50446 -12.27197 -12.20470 -11.83039 -11.65538 -11.39152 -11.24226 -11.12574 -10.83622 -10.60727 -9.92854 -9.86330 -9.51696 -9.23918 -8.75584 -8.68714 -8.21168 -7.63497 -6.27736 -4.31979 1.12393 1.34598 2.40891 2.93846 3.09279 3.26103 3.28961 3.32777 3.40215 3.44011 3.82646 4.09876 4.29476 4.45282 4.64376 4.68012 4.82988 4.93813 4.94533 5.14184 5.16126 5.21702 5.26893 5.40419 5.64975 6.16553 6.24505 6.32914 6.39883 6.50493 6.55853 6.65445 6.82749 6.87336 7.07190 7.28257 7.28783 7.44237 7.51459 8.19804 8.60069 8.73702 9.05627 9.34239 10.83757 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.016529 B = 0.002954 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.623151 B = 9475.755667 C =10662.574301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.133 3.867 4 C -0.212 4.212 5 C 0.199 3.801 6 N -0.694 5.694 7 C 0.692 3.308 8 O -0.584 6.584 9 N -0.713 5.713 10 C 0.247 3.753 11 H 0.051 0.949 12 C -0.148 4.148 13 C -0.531 4.531 14 H 0.079 0.921 15 C 0.082 3.918 16 N -0.887 5.887 17 Si 0.875 3.125 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.259 1.259 21 C -0.117 4.117 22 C -0.132 4.132 23 C 0.047 3.953 24 O -0.312 6.312 25 C 0.410 3.590 26 F -0.201 7.201 27 F -0.199 7.199 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.056 0.944 31 H 0.140 0.860 32 H 0.405 0.595 33 H 0.391 0.609 34 H 0.046 0.954 35 H 0.029 0.971 36 H 0.053 0.947 37 H 0.269 0.731 38 H 0.152 0.848 39 H 0.141 0.859 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.757 -25.042 -3.022 25.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.220 6.220 3 C 0.087 3.913 4 C -0.234 4.234 5 C 0.102 3.898 6 N -0.342 5.342 7 C 0.393 3.607 8 O -0.462 6.462 9 N -0.365 5.365 10 C 0.144 3.856 11 H 0.069 0.931 12 C -0.207 4.207 13 C -0.569 4.569 14 H 0.097 0.903 15 C -0.123 4.123 16 N -0.524 5.524 17 Si 0.701 3.299 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.184 1.184 21 C -0.138 4.138 22 C -0.151 4.151 23 C 0.003 3.997 24 O -0.230 6.230 25 C 0.319 3.681 26 F -0.183 7.183 27 F -0.181 7.181 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.158 0.842 32 H 0.240 0.760 33 H 0.224 0.776 34 H 0.066 0.934 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.169 0.831 39 H 0.158 0.842 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 3.753 -25.040 -2.495 25.443 hybrid contribution -0.015 0.652 -0.227 0.691 sum 3.739 -24.389 -2.722 24.823 Atomic orbital electron populations 1.23078 0.78430 1.03926 1.01482 1.86148 1.21172 1.25672 1.89050 1.17718 0.88350 0.84744 1.00509 1.20709 1.00057 0.90125 1.12463 1.17212 0.90547 0.84596 0.97474 1.42839 1.26247 1.11098 1.54001 1.16239 0.84836 0.80214 0.79454 1.90873 1.21392 1.82136 1.51825 1.46021 1.20982 1.13550 1.55903 1.19069 0.96415 0.82099 0.87976 0.93088 1.22233 1.00585 0.99309 0.98603 1.21001 1.01075 0.91279 1.43566 0.90314 1.24938 0.98311 0.95341 0.93705 1.69878 1.36976 0.99411 1.46091 0.86884 0.85292 0.77477 0.80216 1.19794 1.21143 1.18383 1.21165 0.92186 0.99450 1.01008 1.21266 1.00797 0.90436 1.02577 1.17942 0.87985 0.85131 1.08628 1.86659 1.16430 1.30526 1.89370 1.23341 0.80646 0.92210 0.71886 1.93098 1.90707 1.82302 1.52152 1.93109 1.90685 1.82245 1.52070 0.92584 0.88222 0.92532 0.84239 0.75997 0.77584 0.93449 0.95150 0.92808 0.92154 0.83073 0.84179 0.80497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.60 10.28 -34.30 -0.35 -3.95 16 3 C 0.13 1.74 6.70 -39.14 -0.26 1.48 16 4 C -0.21 -2.60 8.95 -39.27 -0.35 -2.95 16 5 C 0.20 2.92 6.29 -83.63 -0.53 2.40 16 6 N -0.69 -10.09 5.35 -14.20 -0.08 -10.16 16 7 C 0.69 13.22 8.37 -86.92 -0.73 12.49 16 8 O -0.58 -13.25 13.48 5.29 0.07 -13.18 16 9 N -0.71 -13.90 5.07 -59.81 -0.30 -14.21 16 10 C 0.25 5.77 2.22 -69.08 -0.15 5.62 16 11 H 0.05 1.31 4.72 -51.93 -0.25 1.06 16 12 C -0.15 -3.23 9.47 37.15 0.35 -2.87 16 13 C -0.53 -13.99 9.05 -34.44 -0.31 -14.30 16 14 H 0.08 2.17 8.06 -52.48 -0.42 1.75 16 15 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 16 N -0.89 -25.78 13.96 55.43 0.77 -25.00 16 17 Si 0.87 21.37 26.99 -169.99 -4.59 16.78 16 18 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 20 H -0.26 -6.26 6.82 56.52 0.39 -5.87 16 21 C -0.12 -1.89 8.69 -39.38 -0.34 -2.23 16 22 C -0.13 -1.90 8.25 -39.48 -0.33 -2.23 16 23 C 0.05 0.65 6.50 -39.13 -0.25 0.39 16 24 O -0.31 -3.74 10.21 -34.55 -0.35 -4.09 16 25 C 0.41 3.61 5.97 101.05 0.60 4.21 16 26 F -0.20 -2.08 15.58 2.25 0.04 -2.05 16 27 F -0.20 -2.18 15.58 2.25 0.04 -2.14 16 28 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16 31 H 0.14 1.30 6.30 -52.49 -0.33 0.97 16 32 H 0.40 4.40 8.84 -40.82 -0.36 4.04 16 33 H 0.39 6.54 8.61 -40.82 -0.35 6.19 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.15 2.74 6.27 -52.48 -0.33 2.41 16 39 H 0.14 1.91 5.08 -52.49 -0.27 1.64 16 40 H 0.18 0.62 8.14 -51.92 -0.42 0.19 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -33.93 345.51 -5.32 -39.25 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -4.37 Total: 8.19 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -1.40 Total: 5.36 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.39 Total: -49.37 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.63 Total: -21.22 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.07 Total: -4.19 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.59 Total: 16.78 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.93 -5.32 -39.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597114607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.537 kcal (2) G-P(sol) polarization free energy of solvation -33.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds