Wall clock time and date at job start Sat Apr 11 2020 02:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00088 * 2 1 4 4 H 1.48505 * 109.47378 * 89.99471 * 3 2 1 5 5 H 1.48503 * 109.47382 * 329.99533 * 3 2 1 6 6 H 1.48500 * 109.47303 * 209.99770 * 3 2 1 7 7 C 1.37875 * 119.99571 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00324 * 5.17373 * 7 2 1 9 9 C 1.50702 * 119.99840 * 185.17229 * 7 2 1 10 10 H 1.09003 * 109.50364 * 305.30822 * 9 7 2 11 11 C 1.53125 * 109.50387 * 65.38005 * 9 7 2 12 12 C 1.53114 * 109.15968 * 177.59658 * 11 9 7 13 13 C 1.53038 * 109.27998 * 302.34482 * 12 11 9 14 14 N 1.46854 * 109.51962 * 59.18258 * 13 12 11 15 15 C 1.46907 * 110.99760 * 174.16278 * 14 13 12 16 16 C 1.50703 * 109.46848 * 293.95332 * 15 14 13 17 17 C 1.39336 * 119.57240 * 90.00244 * 16 15 14 18 18 C 1.36086 * 121.06073 * 180.02562 * 17 16 15 19 19 C 1.40577 * 119.74590 * 359.97438 * 18 17 16 20 20 N 1.33715 * 121.06515 * 180.02562 * 19 18 17 21 21 C 1.31123 * 121.35215 * 180.02562 * 20 19 18 22 22 C 1.39237 * 121.76904 * 359.94889 * 21 20 19 23 23 C 1.36748 * 119.92119 * 0.02883 * 22 21 20 24 24 Cl 1.73604 * 120.93661 * 180.02562 * 23 22 21 25 25 C 1.40903 * 118.12664 * 359.97438 * 23 22 21 26 26 C 1.36157 * 119.56520 * 269.73273 * 16 15 14 27 27 C 1.46848 * 111.19584 * 298.25451 * 14 13 12 28 28 H 0.96993 * 120.00348 * 174.99443 * 1 2 3 29 29 H 1.08999 * 109.52267 * 297.50300 * 11 9 7 30 30 H 1.09006 * 109.51879 * 57.69028 * 11 9 7 31 31 H 1.08994 * 109.50586 * 62.28946 * 12 11 9 32 32 H 1.09002 * 109.50093 * 182.36770 * 12 11 9 33 33 H 1.09001 * 109.46166 * 179.19663 * 13 12 11 34 34 H 1.08998 * 109.46442 * 299.17149 * 13 12 11 35 35 H 1.08991 * 109.47099 * 53.95182 * 15 14 13 36 36 H 1.09002 * 109.46782 * 173.95293 * 15 14 13 37 37 H 1.08005 * 119.47127 * 359.97438 * 17 16 15 38 38 H 1.07995 * 120.12499 * 179.97438 * 18 17 16 39 39 H 1.07997 * 119.11646 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.03858 * 180.02562 * 22 21 20 41 41 H 1.08002 * 120.19792 * 359.97438 * 26 16 15 42 42 H 1.08995 * 109.46210 * 301.72735 * 27 14 13 43 43 H 1.08998 * 109.45841 * 181.75920 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4467 2.6527 -0.7001 6 1 3.5468 1.4401 -0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4678 -2.1275 -0.0834 9 6 3.5069 -1.1968 0.1182 10 1 3.9341 -0.5667 -0.6620 11 6 3.9131 -0.6555 1.4918 12 6 5.4371 -0.7177 1.6258 13 6 5.9032 -2.1619 1.4281 14 7 5.4911 -2.6330 0.0996 15 6 6.0402 -3.9667 -0.1797 16 6 7.5415 -3.8809 -0.2794 17 6 8.3176 -4.0535 0.8648 18 6 9.6755 -3.9818 0.8096 19 6 10.3113 -3.7303 -0.4187 20 7 11.6436 -3.6549 -0.5032 21 6 12.2425 -3.4202 -1.6459 22 6 11.5255 -3.2389 -2.8256 23 6 10.1597 -3.3037 -2.8106 24 17 9.2396 -3.0824 -4.2661 25 6 9.5202 -3.5561 -1.5807 26 6 8.1220 -3.6413 -1.4875 27 6 4.0289 -2.6270 -0.0359 28 1 -0.4850 -0.8368 -0.0733 29 1 3.5807 0.3780 1.5889 30 1 3.4536 -1.2618 2.2726 31 1 5.8953 -0.0807 0.8694 32 1 5.7295 -0.3729 2.6177 33 1 6.9892 -2.2073 1.5088 34 1 5.4554 -2.7961 2.1933 35 1 5.7679 -4.6478 0.6264 36 1 5.6340 -4.3369 -1.1210 37 1 7.8338 -4.2465 1.8110 38 1 10.2623 -4.1175 1.7060 39 1 13.3208 -3.3663 -1.6727 40 1 12.0476 -3.0474 -3.7515 41 1 7.5102 -3.5139 -2.3684 42 1 3.5901 -3.2590 0.7362 43 1 3.7537 -3.0102 -1.0185 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237270238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:29:31 Heat of formation + Delta-G solvation = 42.015529 kcal Electronic energy + Delta-G solvation = -25321.554808 eV Core-core repulsion = 21777.681037 eV Total energy + Delta-G solvation = -3543.873771 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.16050 -38.89797 -37.34337 -37.04618 -34.03699 -33.38787 -32.30850 -30.90107 -30.32356 -30.11868 -26.45652 -24.79939 -24.23244 -23.37616 -22.38676 -21.95523 -20.75040 -18.85813 -18.36789 -17.54925 -17.34131 -17.16945 -15.61034 -15.16147 -14.92912 -14.79636 -14.48060 -14.21389 -14.05778 -13.84115 -13.75732 -13.44476 -13.19491 -12.71960 -12.67200 -12.46330 -12.12121 -11.97514 -11.79386 -11.66015 -11.38703 -11.23318 -11.13836 -10.72463 -10.59458 -10.33315 -10.10328 -9.91535 -9.81459 -9.55980 -9.37331 -9.02429 -8.58181 -8.43085 -8.37208 -7.89176 -6.40715 -4.06764 0.01584 0.47429 1.59597 1.64632 2.59496 3.39689 3.48373 3.63226 3.74926 3.95436 4.23963 4.35146 4.38771 4.51123 4.52614 4.79052 4.80138 5.03172 5.12680 5.17624 5.30276 5.31909 5.44008 5.48050 5.58961 5.63439 5.74577 5.80331 5.82314 5.96964 6.02328 6.12489 6.13627 6.26403 6.32666 6.39703 6.46848 6.56261 6.61148 6.81964 6.86402 7.23449 7.39717 7.52364 7.54322 7.65123 8.17020 8.38227 8.90450 9.63508 10.99182 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.016773 B = 0.003069 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.967140 B = 9120.969891 C = 9788.294373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.027 3.973 3 Si 1.056 2.944 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.590 4.590 8 H 0.054 0.946 9 C 0.021 3.979 10 H 0.036 0.964 11 C -0.120 4.120 12 C -0.120 4.120 13 C 0.059 3.941 14 N -0.535 5.535 15 C 0.087 3.913 16 C -0.057 4.057 17 C -0.083 4.083 18 C -0.097 4.097 19 C 0.135 3.865 20 N -0.469 5.469 21 C 0.136 3.864 22 C -0.171 4.171 23 C 0.024 3.976 24 Cl -0.042 7.042 25 C -0.094 4.094 26 C -0.077 4.077 27 C 0.078 3.922 28 H 0.266 0.734 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.027 0.973 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.131 0.869 38 H 0.139 0.861 39 H 0.167 0.833 40 H 0.146 0.854 41 H 0.138 0.862 42 H 0.024 0.976 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.277 -9.053 -2.904 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.886 3.114 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.628 4.628 8 H 0.072 0.928 9 C 0.001 3.999 10 H 0.054 0.946 11 C -0.158 4.158 12 C -0.158 4.158 13 C -0.069 4.069 14 N -0.260 5.260 15 C -0.040 4.040 16 C -0.058 4.058 17 C -0.103 4.103 18 C -0.115 4.115 19 C 0.013 3.987 20 N -0.177 5.177 21 C -0.037 4.037 22 C -0.192 4.192 23 C -0.011 4.011 24 Cl -0.013 7.013 25 C -0.097 4.097 26 C -0.097 4.097 27 C -0.049 4.049 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.102 0.898 37 H 0.149 0.851 38 H 0.157 0.843 39 H 0.184 0.816 40 H 0.164 0.836 41 H 0.155 0.845 42 H 0.042 0.958 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 24.550 -7.209 -2.479 25.706 hybrid contribution -0.729 -2.074 -0.375 2.230 sum 23.821 -9.282 -2.854 25.724 Atomic orbital electron populations 1.70821 1.06849 1.30520 1.46994 1.25770 0.96278 1.02500 0.93090 0.83833 0.75289 0.75417 0.76864 1.21212 1.21911 1.20181 1.22043 0.90569 0.94991 1.55240 0.92811 1.19170 0.96417 0.91521 0.92757 0.94589 1.21991 0.92344 1.00701 1.00787 1.21670 0.98377 0.95486 1.00296 1.22097 0.99222 0.96610 0.88955 1.62084 1.12725 1.22147 1.28996 1.21100 0.89566 0.91517 1.01835 1.19677 0.96197 0.97195 0.92718 1.20966 0.93371 0.97383 0.98557 1.20714 0.94229 1.00503 0.96097 1.18803 0.88699 0.98339 0.92822 1.68022 1.09723 1.12227 1.27704 1.22900 1.00683 0.93407 0.86712 1.21833 0.92568 1.03435 1.01376 1.21158 0.92587 0.99353 0.87991 1.98412 1.73933 1.94837 1.34105 1.18632 0.95372 1.03339 0.92332 1.20908 0.92084 0.97849 0.98823 1.22136 0.83049 0.99937 0.99756 0.92423 0.93138 0.92941 0.91845 0.92776 0.91600 0.95441 0.93957 0.89751 0.85072 0.84341 0.81618 0.83581 0.84461 0.95789 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.37 13.70 55.43 0.76 -27.61 16 2 C 0.03 0.79 5.43 -17.82 -0.10 0.69 16 3 Si 1.06 25.89 25.30 -169.99 -4.30 21.59 16 4 H -0.28 -6.65 6.79 56.52 0.38 -6.26 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.38 6.36 56.52 0.36 -6.02 16 7 C -0.59 -16.41 8.92 -34.44 -0.31 -16.72 16 8 H 0.05 1.60 7.98 -52.49 -0.42 1.18 16 9 C 0.02 0.49 1.84 -91.69 -0.17 0.32 16 10 H 0.04 0.89 6.65 -51.93 -0.35 0.55 16 11 C -0.12 -2.57 4.89 -26.61 -0.13 -2.70 16 12 C -0.12 -2.11 6.09 -26.65 -0.16 -2.27 16 13 C 0.06 0.93 5.14 -3.83 -0.02 0.91 16 14 N -0.54 -8.96 4.65 -236.11 -1.10 -10.05 16 15 C 0.09 1.18 5.10 -4.97 -0.03 1.15 16 16 C -0.06 -0.71 4.86 -104.96 -0.51 -1.22 16 17 C -0.08 -0.90 7.75 -39.95 -0.31 -1.21 16 18 C -0.10 -1.06 9.98 -39.47 -0.39 -1.45 16 19 C 0.13 1.64 6.60 -84.86 -0.56 1.08 16 20 N -0.47 -5.34 10.34 -11.00 -0.11 -5.46 16 21 C 0.14 1.17 11.14 -17.48 -0.19 0.97 16 22 C -0.17 -1.45 9.84 -39.75 -0.39 -1.84 16 23 C 0.02 0.26 6.37 -39.11 -0.25 0.01 16 24 Cl -0.04 -0.43 27.66 -51.86 -1.43 -1.87 16 25 C -0.09 -1.15 5.74 -106.78 -0.61 -1.76 16 26 C -0.08 -0.97 9.07 -39.52 -0.36 -1.33 16 27 C 0.08 1.55 4.68 -3.84 -0.02 1.53 16 28 H 0.27 8.17 8.72 -40.82 -0.36 7.82 16 29 H 0.05 1.13 4.37 -51.93 -0.23 0.90 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.92 5.74 -51.93 -0.30 0.62 16 34 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.04 0.53 8.06 -51.93 -0.42 0.11 16 36 H 0.08 1.09 7.91 -51.93 -0.41 0.68 16 37 H 0.13 1.21 7.93 -52.48 -0.42 0.80 16 38 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.15 0.83 8.06 -52.49 -0.42 0.40 16 41 H 0.14 1.70 7.07 -52.49 -0.37 1.33 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 1.30 8.01 -51.93 -0.42 0.88 16 LS Contribution 352.68 15.07 5.31 5.31 Total: -1.00 -31.30 352.68 -11.30 -42.59 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -5.91 Total: -0.66 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -4.51 Total: -23.84 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -0.45 Total: -43.12 kcal Atomic # 14 Polarization: 25.89 SS G_CDS: -4.30 Total: 21.59 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.43 Total: -1.87 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.30 -11.30 -42.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237270238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.608 kcal (2) G-P(sol) polarization free energy of solvation -31.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds