Wall clock time and date at job start Sat Apr 11 2020 02:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39697 * 125.76750 * 2 1 4 4 C 1.36217 * 107.85426 * 179.72313 * 3 2 1 5 5 N 1.39199 * 126.27185 * 180.24619 * 4 3 2 6 6 C 1.34778 * 119.99916 * 0.16811 * 5 4 3 7 7 O 1.21394 * 120.00040 * 0.02562 * 6 5 4 8 8 C 1.49302 * 120.00179 * 180.02562 * 6 5 4 9 9 O 1.21364 * 119.99604 * 0.02562 * 8 6 5 10 10 N 1.34773 * 120.00389 * 180.02562 * 8 6 5 11 11 C 1.46501 * 120.00354 * 180.02562 * 10 8 6 12 12 C 1.52996 * 109.47396 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.47232 * 179.97438 * 12 11 10 14 14 F 1.39903 * 109.46829 * 299.99797 * 12 11 10 15 15 F 1.39904 * 109.47452 * 59.99033 * 12 11 10 16 16 N 1.35860 * 107.45724 * 0.38932 * 4 3 2 17 17 C 1.46491 * 126.09683 * 179.87697 * 16 4 3 18 18 C 1.50702 * 109.46957 * 269.71194 * 17 16 4 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 N 1.30845 * 125.77106 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47304 * 270.01760 * 1 2 3 28 28 H 1.09004 * 109.47362 * 30.01391 * 1 2 3 29 29 H 1.08996 * 109.47330 * 150.01451 * 1 2 3 30 30 H 1.07999 * 126.07347 * 359.95063 * 3 2 1 31 31 H 0.96995 * 119.99788 * 180.17713 * 5 4 3 32 32 H 0.97003 * 119.99588 * 359.97438 * 10 8 6 33 33 H 1.09005 * 109.46489 * 299.99781 * 11 10 8 34 34 H 1.08993 * 109.46929 * 59.99543 * 11 10 8 35 35 H 1.08995 * 109.47364 * 59.99709 * 13 12 11 36 36 H 1.08999 * 109.47215 * 179.97438 * 13 12 11 37 37 H 1.08996 * 109.46780 * 299.99604 * 13 12 11 38 38 H 1.09004 * 109.47166 * 149.71460 * 17 16 4 39 39 H 1.08994 * 109.47507 * 29.71166 * 17 16 4 40 40 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3236 1.1335 0.0000 4 6 3.6197 0.7145 0.0063 5 7 4.7484 1.5291 0.0132 6 6 4.6118 2.8699 0.0176 7 8 3.5044 3.3672 0.0160 8 6 5.8225 3.7437 0.0245 9 8 6.9296 3.2464 0.0256 10 7 5.6859 5.0844 0.0294 11 6 6.8739 5.9418 0.0356 12 6 6.4433 7.4099 0.0410 13 6 7.6839 8.3052 0.0481 14 9 5.6817 7.6766 -1.1019 15 9 5.6766 7.6669 1.1826 16 7 3.6089 -0.6440 0.0013 17 6 4.7857 -1.5165 0.0026 18 6 5.1904 -1.8161 -1.4178 19 1 4.6276 -1.3982 -2.2393 20 6 6.2831 -2.6189 -1.6685 21 7 6.9687 -3.1276 -0.6681 22 14 6.7893 -2.9841 -3.4291 23 1 7.1111 -1.7126 -4.1255 24 1 7.9852 -3.8646 -3.4277 25 1 5.6740 -3.6659 -4.1337 26 7 2.2719 -1.0616 0.0005 27 1 -0.3634 0.0003 1.0276 28 1 -0.3634 0.8899 -0.5141 29 1 -0.3634 -0.8901 -0.5136 30 1 1.9870 2.1597 -0.0008 31 1 5.6332 1.1317 0.0148 32 1 4.8010 5.4818 0.0281 33 1 7.4670 5.7342 0.9263 34 1 7.4713 5.7412 -0.8537 35 1 8.2816 8.1051 -0.8412 36 1 7.3772 9.3511 0.0514 37 1 8.2769 8.0973 0.9387 38 1 4.5471 -2.4476 0.5166 39 1 5.6071 -1.0178 0.5169 40 1 7.7371 -3.6927 -0.8445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326311708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:30:11 Heat of formation + Delta-G solvation = -93.018357 kcal Electronic energy + Delta-G solvation = -27892.608730 eV Core-core repulsion = 23380.233507 eV Total energy + Delta-G solvation = -4512.375223 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.47325 -47.45261 -41.21428 -40.20365 -38.53048 -35.89326 -34.76551 -33.80395 -32.49958 -32.08475 -29.32748 -28.66281 -27.72594 -26.06995 -24.62837 -22.85509 -22.37658 -21.17531 -20.02597 -19.70011 -18.33011 -18.17272 -17.36922 -16.90741 -16.72249 -16.51524 -16.20376 -16.11910 -15.40222 -14.89793 -14.79403 -14.43173 -14.33459 -14.07614 -13.98658 -13.77982 -13.36773 -13.25796 -13.00377 -12.99220 -12.78501 -12.67847 -12.56346 -12.08875 -11.89158 -11.74331 -11.60079 -11.49229 -11.10140 -10.85701 -10.57304 -10.33008 -9.90525 -9.83958 -9.74071 -9.60181 -8.69911 -7.99198 -7.58576 -6.31733 -4.40480 1.13601 1.91041 2.56401 3.04980 3.11358 3.17876 3.20967 3.24867 3.29336 3.50761 3.52312 3.71183 3.85829 4.01528 4.25217 4.29514 4.69502 4.82699 4.99038 5.01661 5.15853 5.27014 5.28642 5.52695 5.67409 5.98597 6.01983 6.06300 6.14053 6.27538 6.48593 6.73620 6.81697 7.00097 7.30566 7.43073 7.47160 7.60634 7.73562 7.79958 8.04799 8.54816 8.67825 9.27081 10.75647 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.011173 B = 0.003232 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.488657 B = 8660.724092 C =10529.524645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.050 3.950 3 C -0.286 4.286 4 C 0.292 3.708 5 N -0.605 5.605 6 C 0.514 3.486 7 O -0.494 6.494 8 C 0.521 3.479 9 O -0.503 6.503 10 N -0.702 5.702 11 C 0.079 3.921 12 C 0.279 3.721 13 C -0.193 4.193 14 F -0.193 7.193 15 F -0.194 7.194 16 N -0.340 5.340 17 C 0.255 3.745 18 C -0.543 4.543 19 H 0.065 0.935 20 C 0.068 3.932 21 N -0.889 5.889 22 Si 0.908 3.092 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.273 1.273 26 N -0.276 5.276 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.163 0.837 31 H 0.429 0.571 32 H 0.419 0.581 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.193 21.561 2.862 21.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.318 4.318 4 C 0.070 3.930 5 N -0.253 5.253 6 C 0.294 3.706 7 O -0.367 6.367 8 C 0.302 3.698 9 O -0.377 6.377 10 N -0.358 5.358 11 C -0.045 4.045 12 C 0.243 3.757 13 C -0.251 4.251 14 F -0.175 7.175 15 F -0.175 7.175 16 N -0.126 5.126 17 C 0.138 3.862 18 C -0.582 4.582 19 H 0.083 0.917 20 C -0.136 4.136 21 N -0.526 5.526 22 Si 0.734 3.266 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.199 1.199 26 N -0.102 5.102 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.180 0.820 31 H 0.268 0.732 32 H 0.256 0.744 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.553 20.101 2.918 20.319 hybrid contribution 0.506 0.560 -0.957 1.219 sum 1.059 20.661 1.961 20.781 Atomic orbital electron populations 1.20033 0.87392 1.02568 1.02145 1.22023 0.96628 0.90861 1.01974 1.21292 0.88906 1.00585 1.21024 1.17953 0.87450 0.83506 1.04060 1.42257 1.09604 1.04732 1.68741 1.19704 0.89414 0.82469 0.79038 1.90719 1.25751 1.73807 1.46451 1.19800 0.89289 0.82941 0.77810 1.90846 1.26152 1.74044 1.46638 1.45407 1.10743 1.05236 1.74434 1.22548 0.89143 0.86100 1.06745 1.21358 0.86551 0.95727 0.72096 1.22745 0.95503 1.00693 1.06177 1.93074 1.78378 1.95145 1.50854 1.93071 1.78141 1.95319 1.50958 1.49592 1.06605 1.01878 1.54537 1.19689 0.77710 0.89726 0.99101 1.21282 1.13399 1.32287 0.91214 0.91702 1.24934 0.95588 0.94838 0.98258 1.69906 1.19037 1.32525 1.31139 0.86390 0.78086 0.78517 0.83579 1.19934 1.20857 1.19858 1.77369 0.86073 1.21785 1.24973 0.91276 0.91050 0.91400 0.81971 0.73235 0.74355 0.87518 0.87493 0.88650 0.89255 0.88658 0.92331 0.93626 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.44 36.01 0.38 -0.52 16 2 C 0.05 0.98 7.20 -82.47 -0.59 0.39 16 3 C -0.29 -5.70 9.58 -39.76 -0.38 -6.08 16 4 C 0.29 6.17 7.68 -152.85 -1.17 5.00 16 5 N -0.61 -11.14 5.40 -11.80 -0.06 -11.21 16 6 C 0.51 8.29 7.85 -11.65 -0.09 8.20 16 7 O -0.49 -8.32 13.60 5.46 0.07 -8.24 16 8 C 0.52 7.21 7.88 -11.66 -0.09 7.12 16 9 O -0.50 -7.95 16.47 5.48 0.09 -7.86 16 10 N -0.70 -7.45 5.41 -60.78 -0.33 -7.78 16 11 C 0.08 0.60 5.19 -4.04 -0.02 0.58 16 12 C 0.28 1.91 2.06 -26.73 -0.06 1.86 16 13 C -0.19 -0.71 9.38 37.16 0.35 -0.36 16 14 F -0.19 -1.71 16.92 2.25 0.04 -1.67 16 15 F -0.19 -1.68 16.92 2.25 0.04 -1.64 16 16 N -0.34 -8.00 3.62 -61.47 -0.22 -8.22 16 17 C 0.26 6.47 6.02 -5.20 -0.03 6.44 16 18 C -0.54 -14.84 9.39 -34.44 -0.32 -15.16 16 19 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 20 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 21 N -0.89 -24.73 13.29 55.43 0.74 -24.00 16 22 Si 0.91 21.07 29.54 -169.99 -5.02 16.05 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 N -0.28 -6.36 12.56 33.64 0.42 -5.94 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.16 3.04 5.83 -52.49 -0.31 2.73 16 31 H 0.43 7.88 7.45 -40.82 -0.30 7.58 16 32 H 0.42 4.27 7.83 -40.82 -0.32 3.95 16 33 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 39 H 0.05 1.13 7.51 -51.93 -0.39 0.74 16 40 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 361.21 15.07 5.44 5.44 Total: -1.00 -32.30 361.21 -5.60 -37.90 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -4.67 Total: 7.99 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: -2.13 Total: 9.19 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.54 Total: -57.15 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.16 Total: -16.10 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.08 Total: -3.32 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.30 -5.60 -37.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326311708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.121 kcal (2) G-P(sol) polarization free energy of solvation -32.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds