Wall clock time and date at job start Sat Apr 11 2020 02:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36660 * 120.14600 * 2 1 4 4 C 1.38801 * 120.44207 * 179.97438 * 3 2 1 5 5 C 1.37830 * 120.74299 * 0.02562 * 4 3 2 6 6 C 1.38975 * 119.85853 * 359.97438 * 5 4 3 7 7 O 1.34720 * 133.25037 * 180.34015 * 6 5 4 8 8 C 1.34945 * 110.86867 * 180.09206 * 7 6 5 9 9 C 1.46980 * 125.13021 * 179.85044 * 8 7 6 10 10 O 1.21659 * 119.99690 * 179.69843 * 9 8 7 11 11 N 1.34772 * 119.99838 * 359.69605 * 9 8 7 12 12 C 1.46498 * 120.00124 * 180.02562 * 11 9 8 13 13 H 1.08999 * 110.77990 * 36.78232 * 12 11 9 14 14 C 1.54320 * 110.71809 * 273.54731 * 12 11 9 15 15 N 1.47019 * 107.27105 * 263.82374 * 14 12 11 16 16 C 1.36938 * 125.65267 * 181.02425 * 15 14 12 17 17 H 1.07994 * 120.00561 * 161.51230 * 16 15 14 18 18 C 1.38815 * 119.99711 * 341.78318 * 16 15 14 19 19 N 1.31620 * 120.00188 * 156.20996 * 18 16 15 20 20 Si 1.86804 * 119.99893 * 336.21020 * 18 16 15 21 21 H 1.48498 * 109.47148 * 84.65859 * 20 18 16 22 22 H 1.48503 * 109.47027 * 204.66164 * 20 18 16 23 23 H 1.48500 * 109.47071 * 324.65684 * 20 18 16 24 24 C 1.47425 * 108.70411 * 1.28995 * 15 14 12 25 25 C 1.55132 * 104.72045 * 335.55398 * 24 15 14 26 26 H 1.09007 * 111.21915 * 279.17562 * 25 24 15 27 27 O 1.42899 * 110.90939 * 155.27747 * 25 24 15 28 28 C 1.35809 * 109.74133 * 359.58743 * 8 7 6 29 29 C 1.39668 * 120.14414 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47048 * 270.02224 * 1 2 3 31 31 H 1.09002 * 109.46871 * 30.01536 * 1 2 3 32 32 H 1.08998 * 109.47019 * 150.02012 * 1 2 3 33 33 H 1.07994 * 119.78147 * 359.95893 * 3 2 1 34 34 H 1.08004 * 119.62324 * 179.97438 * 4 3 2 35 35 H 1.08008 * 120.07123 * 179.97438 * 5 4 3 36 36 H 0.96998 * 120.00359 * 359.97438 * 11 9 8 37 37 H 1.09003 * 109.88167 * 144.40996 * 14 12 11 38 38 H 1.08994 * 110.01291 * 23.31745 * 14 12 11 39 39 H 0.96997 * 119.99857 * 180.02562 * 19 18 16 40 40 H 1.09004 * 110.36737 * 94.47912 * 24 15 14 41 41 H 1.09000 * 110.37185 * 216.80576 * 24 15 14 42 42 H 0.96701 * 114.00414 * 67.96944 * 27 25 24 43 43 H 1.08008 * 126.95715 * 180.24362 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1818 0.0000 4 6 3.5813 1.1889 0.0005 5 6 4.2920 0.0080 0.0005 6 6 3.6160 -1.2063 0.0006 7 8 4.0244 -2.4901 0.0064 8 6 2.9686 -3.3305 0.0013 9 6 3.0554 -4.7977 0.0023 10 8 2.0396 -5.4671 0.0029 11 7 4.2604 -5.4014 0.0025 12 6 4.3470 -6.8638 0.0029 13 1 3.5550 -7.2983 -0.6072 14 6 4.2901 -7.4137 1.4437 15 7 5.6763 -7.6277 1.8842 16 6 6.0592 -8.1272 3.1004 17 1 7.0542 -8.5261 3.2314 18 6 5.1664 -8.1261 4.1634 19 7 5.3184 -8.9822 5.1514 20 14 3.7492 -6.9094 4.1915 21 1 2.6106 -7.4575 3.4117 22 1 3.3226 -6.6789 5.5952 23 1 4.1881 -5.6244 3.5903 24 6 6.5861 -7.2094 0.8023 25 6 5.7408 -7.3313 -0.4928 26 1 5.7048 -8.3624 -0.8448 27 8 6.2403 -6.4625 -1.5115 28 6 1.8137 -2.6160 0.0010 29 6 2.2084 -1.2078 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8899 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6522 2.1163 -0.0007 34 1 4.1103 2.1306 0.0001 35 1 5.3719 0.0262 0.0005 36 1 5.0703 -4.8677 0.0016 37 1 3.7463 -8.3583 1.4588 38 1 3.7999 -6.6935 2.0987 39 1 4.6944 -8.9817 5.8940 40 1 6.9065 -6.1785 0.9533 41 1 7.4497 -7.8729 0.7550 42 1 7.1093 -6.7147 -1.8524 43 1 0.8074 -3.0083 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084100310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:30:22 Heat of formation + Delta-G solvation = -15.699990 kcal Electronic energy + Delta-G solvation = -28145.818229 eV Core-core repulsion = 24158.732560 eV Total energy + Delta-G solvation = -3987.085669 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -42.66250 -39.88673 -38.45232 -38.01872 -35.51391 -34.01723 -33.57573 -31.98587 -31.77776 -30.23642 -28.90064 -27.87481 -27.09039 -24.65929 -23.80555 -22.89423 -21.30157 -20.80784 -20.61925 -20.33266 -18.51862 -17.44822 -17.25673 -17.02289 -16.51864 -16.32994 -15.77855 -15.44032 -15.04846 -14.63525 -14.29929 -14.11832 -13.98209 -13.88312 -13.63281 -13.36944 -13.30383 -13.17067 -12.84843 -12.60511 -12.28990 -11.99324 -11.94441 -11.89098 -11.61247 -11.33666 -11.23397 -10.79039 -10.60843 -10.30917 -10.27114 -10.15937 -9.79757 -9.46110 -8.96521 -8.82634 -8.66689 -8.33560 -7.16765 -6.01553 -3.32464 0.38750 1.09357 1.69696 2.33093 3.11788 3.17334 3.37130 3.40102 3.48860 3.50420 4.08166 4.25506 4.39461 4.50966 4.54627 4.81846 4.84126 4.85253 4.94910 5.00159 5.05970 5.09789 5.21775 5.32527 5.33206 5.39364 5.44252 5.47252 5.71356 5.76857 5.80354 5.89845 6.00246 6.10009 6.10978 6.22649 6.29580 6.33488 6.44993 6.48562 6.68406 6.85130 7.53023 7.59342 7.67854 8.12907 8.23838 8.74123 9.61480 10.05955 11.14235 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014198 B = 0.003545 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.687222 B = 7895.712490 C = 8611.404345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.027 4.027 3 C -0.145 4.145 4 C -0.081 4.081 5 C -0.116 4.116 6 C 0.074 3.926 7 O -0.181 6.181 8 C -0.015 4.015 9 C 0.596 3.404 10 O -0.518 6.518 11 N -0.687 5.687 12 C 0.143 3.857 13 H 0.104 0.896 14 C 0.108 3.892 15 N -0.604 5.604 16 C -0.248 4.248 17 H 0.095 0.905 18 C 0.028 3.972 19 N -0.902 5.902 20 Si 0.881 3.119 21 H -0.282 1.282 22 H -0.302 1.302 23 H -0.281 1.281 24 C 0.103 3.897 25 C 0.081 3.919 26 H 0.086 0.914 27 O -0.560 6.560 28 C -0.118 4.118 29 C -0.143 4.143 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.412 0.588 37 H 0.056 0.944 38 H 0.040 0.960 39 H 0.265 0.735 40 H 0.033 0.967 41 H 0.056 0.944 42 H 0.380 0.620 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.850 18.507 -14.919 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.027 4.027 3 C -0.163 4.163 4 C -0.099 4.099 5 C -0.134 4.134 6 C 0.025 3.975 7 O -0.082 6.082 8 C -0.065 4.065 9 C 0.381 3.619 10 O -0.396 6.396 11 N -0.336 5.336 12 C 0.038 3.962 13 H 0.122 0.878 14 C -0.018 4.018 15 N -0.333 5.333 16 C -0.374 4.374 17 H 0.113 0.887 18 C -0.171 4.171 19 N -0.545 5.545 20 Si 0.713 3.287 21 H -0.209 1.209 22 H -0.230 1.230 23 H -0.208 1.208 24 C -0.023 4.023 25 C 0.020 3.980 26 H 0.104 0.896 27 O -0.365 6.365 28 C -0.138 4.138 29 C -0.144 4.144 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.248 0.752 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.228 0.772 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.857 18.086 -14.561 23.722 hybrid contribution 0.063 0.704 0.237 0.745 sum -4.794 18.790 -14.324 24.109 Atomic orbital electron populations 1.20834 0.90553 1.03192 1.02881 1.19164 0.96200 0.90663 0.96663 1.20669 0.94189 0.97430 1.03971 1.20958 0.94015 0.97039 0.97921 1.19986 1.00444 0.87541 1.05459 1.19758 0.92741 0.83893 1.01095 1.84052 1.34127 1.14111 1.75941 1.22056 0.85665 0.90716 1.08031 1.16661 0.84507 0.83280 0.77500 1.90882 1.35031 1.62712 1.51010 1.45603 1.07966 1.07791 1.72275 1.22130 0.97256 0.79270 0.97588 0.87796 1.22176 0.89046 0.99133 0.91436 1.44639 0.99185 1.75295 1.14151 1.18608 1.01315 1.33172 0.84352 0.88720 1.24926 0.97977 0.98332 0.95912 1.69842 1.38671 1.34213 1.11801 0.87017 0.83145 0.83363 0.75214 1.20896 1.22968 1.20766 1.22315 0.93976 0.98365 0.87635 1.23401 0.93177 0.93424 0.87962 0.89642 1.86431 1.39203 1.54965 1.55914 1.22667 0.99081 0.90109 1.01982 1.19759 0.93052 0.93481 1.08063 0.90562 0.91064 0.91099 0.85204 0.84565 0.84695 0.75235 0.92563 0.94320 0.92542 0.94943 0.92596 0.77241 0.81281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.96 36.01 0.36 -0.57 16 2 C -0.03 -0.28 5.88 -104.66 -0.62 -0.89 16 3 C -0.14 -1.25 9.63 -39.94 -0.38 -1.63 16 4 C -0.08 -0.69 10.01 -39.52 -0.40 -1.08 16 5 C -0.12 -1.22 10.07 -39.46 -0.40 -1.62 16 6 C 0.07 1.00 7.41 -38.35 -0.28 0.72 16 7 O -0.18 -2.80 10.28 2.76 0.03 -2.77 16 8 C -0.01 -0.24 7.07 -36.91 -0.26 -0.50 16 9 C 0.60 10.86 7.79 -12.72 -0.10 10.76 16 10 O -0.52 -10.56 16.56 5.23 0.09 -10.48 16 11 N -0.69 -12.07 4.78 -53.25 -0.25 -12.32 16 12 C 0.14 2.56 3.13 -66.10 -0.21 2.36 16 13 H 0.10 1.79 7.70 -51.93 -0.40 1.39 16 14 C 0.11 2.42 4.92 -3.07 -0.02 2.41 16 15 N -0.60 -14.36 3.20 -169.94 -0.54 -14.90 16 16 C -0.25 -6.97 10.56 -15.06 -0.16 -7.13 16 17 H 0.10 2.77 8.06 -52.49 -0.42 2.35 16 18 C 0.03 0.83 5.43 -17.43 -0.09 0.73 16 19 N -0.90 -27.91 13.97 55.49 0.78 -27.13 16 20 Si 0.88 23.75 24.40 -169.99 -4.15 19.60 16 21 H -0.28 -7.53 6.83 56.52 0.39 -7.14 16 22 H -0.30 -8.16 7.11 56.52 0.40 -7.76 16 23 H -0.28 -7.61 6.89 56.52 0.39 -7.22 16 24 C 0.10 1.90 6.95 -2.41 -0.02 1.88 16 25 C 0.08 1.22 4.23 -24.46 -0.10 1.12 16 26 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 27 O -0.56 -7.09 12.63 -35.23 -0.44 -7.53 16 28 C -0.12 -1.69 10.52 -37.24 -0.39 -2.08 16 29 C -0.14 -1.88 6.15 -105.19 -0.65 -2.52 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.07 0.56 7.91 -51.93 -0.41 0.15 16 33 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.14 0.73 8.06 -52.48 -0.42 0.30 16 35 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 36 H 0.41 6.78 7.91 -40.82 -0.32 6.45 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.04 0.98 3.42 -51.93 -0.18 0.81 16 39 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.38 3.05 9.12 45.56 0.42 3.46 16 43 H 0.17 2.15 8.06 -52.48 -0.42 1.72 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -35.11 359.80 -7.50 -42.61 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -4.71 Total: 5.55 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -3.71 Total: 1.95 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.02 Total: -54.36 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.33 Total: -20.78 kcal Atomic # 14 Polarization: 23.75 SS G_CDS: -4.15 Total: 19.60 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.11 -7.50 -42.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084100310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.906 kcal (2) G-P(sol) polarization free energy of solvation -35.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds