Wall clock time and date at job start Sat Apr 11 2020 02:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36660 * 120.14600 * 2 1 4 4 C 1.38801 * 120.44207 * 179.97438 * 3 2 1 5 5 C 1.37830 * 120.74299 * 0.02562 * 4 3 2 6 6 C 1.38975 * 119.85853 * 359.97438 * 5 4 3 7 7 O 1.34720 * 133.25037 * 180.34015 * 6 5 4 8 8 C 1.34945 * 110.86867 * 180.09206 * 7 6 5 9 9 C 1.46980 * 125.13021 * 179.85044 * 8 7 6 10 10 O 1.21659 * 119.99690 * 179.69843 * 9 8 7 11 11 N 1.34772 * 119.99838 * 359.69605 * 9 8 7 12 12 C 1.46498 * 120.00124 * 180.02562 * 11 9 8 13 13 H 1.08999 * 110.77990 * 36.78232 * 12 11 9 14 14 C 1.54320 * 110.71809 * 273.54731 * 12 11 9 15 15 N 1.47019 * 107.27105 * 263.82374 * 14 12 11 16 16 C 1.36938 * 125.65267 * 181.02425 * 15 14 12 17 17 H 1.07994 * 120.00561 * 161.51230 * 16 15 14 18 18 C 1.38815 * 119.99711 * 341.78318 * 16 15 14 19 19 N 1.31620 * 120.00188 * 156.20996 * 18 16 15 20 20 Si 1.86804 * 119.99893 * 336.21020 * 18 16 15 21 21 H 1.48498 * 109.47148 * 84.65859 * 20 18 16 22 22 H 1.48503 * 109.47027 * 204.66164 * 20 18 16 23 23 H 1.48500 * 109.47071 * 324.65684 * 20 18 16 24 24 C 1.47425 * 108.70411 * 1.28995 * 15 14 12 25 25 C 1.55132 * 104.72045 * 335.55398 * 24 15 14 26 26 H 1.09007 * 111.21915 * 279.17562 * 25 24 15 27 27 O 1.42899 * 110.90939 * 155.27747 * 25 24 15 28 28 C 1.35809 * 109.74133 * 359.58743 * 8 7 6 29 29 C 1.39668 * 120.14414 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47048 * 270.02224 * 1 2 3 31 31 H 1.09002 * 109.46871 * 30.01536 * 1 2 3 32 32 H 1.08998 * 109.47019 * 150.02012 * 1 2 3 33 33 H 1.07994 * 119.78147 * 359.95893 * 3 2 1 34 34 H 1.08004 * 119.62324 * 179.97438 * 4 3 2 35 35 H 1.08008 * 120.07123 * 179.97438 * 5 4 3 36 36 H 0.96998 * 120.00359 * 359.97438 * 11 9 8 37 37 H 1.09003 * 109.88167 * 144.40996 * 14 12 11 38 38 H 1.08994 * 110.01291 * 23.31745 * 14 12 11 39 39 H 0.96997 * 119.99857 * 180.02562 * 19 18 16 40 40 H 1.09004 * 110.36737 * 94.47912 * 24 15 14 41 41 H 1.09000 * 110.37185 * 216.80576 * 24 15 14 42 42 H 0.96701 * 114.00414 * 67.96944 * 27 25 24 43 43 H 1.08008 * 126.95715 * 180.24362 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1818 0.0000 4 6 3.5813 1.1889 0.0005 5 6 4.2920 0.0080 0.0005 6 6 3.6160 -1.2063 0.0006 7 8 4.0244 -2.4901 0.0064 8 6 2.9686 -3.3305 0.0013 9 6 3.0554 -4.7977 0.0023 10 8 2.0396 -5.4671 0.0029 11 7 4.2604 -5.4014 0.0025 12 6 4.3470 -6.8638 0.0029 13 1 3.5550 -7.2983 -0.6072 14 6 4.2901 -7.4137 1.4437 15 7 5.6763 -7.6277 1.8842 16 6 6.0592 -8.1272 3.1004 17 1 7.0542 -8.5261 3.2314 18 6 5.1664 -8.1261 4.1634 19 7 5.3184 -8.9822 5.1514 20 14 3.7492 -6.9094 4.1915 21 1 2.6106 -7.4575 3.4117 22 1 3.3226 -6.6789 5.5952 23 1 4.1881 -5.6244 3.5903 24 6 6.5861 -7.2094 0.8023 25 6 5.7408 -7.3313 -0.4928 26 1 5.7048 -8.3624 -0.8448 27 8 6.2403 -6.4625 -1.5115 28 6 1.8137 -2.6160 0.0010 29 6 2.2084 -1.2078 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8899 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6522 2.1163 -0.0007 34 1 4.1103 2.1306 0.0001 35 1 5.3719 0.0262 0.0005 36 1 5.0703 -4.8677 0.0016 37 1 3.7463 -8.3583 1.4588 38 1 3.7999 -6.6935 2.0987 39 1 4.6944 -8.9817 5.8940 40 1 6.9065 -6.1785 0.9533 41 1 7.4497 -7.8729 0.7550 42 1 7.1093 -6.7147 -1.8524 43 1 0.8074 -3.0083 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084100310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:30:20 Heat of formation + Delta-G solvation = -42.814383 kcal Electronic energy + Delta-G solvation = -28146.993997 eV Core-core repulsion = 24158.732560 eV Total energy + Delta-G solvation = -3988.261437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -43.66392 -41.29039 -39.61770 -39.11596 -36.88038 -35.56122 -34.43103 -34.00551 -32.68187 -31.44900 -30.35294 -29.41433 -27.85597 -26.35595 -25.10633 -23.78317 -22.75458 -22.12881 -21.76279 -21.72145 -19.71374 -19.02823 -18.65623 -18.22460 -17.62926 -17.43694 -17.13586 -16.93879 -16.22659 -16.10451 -15.79683 -15.48228 -15.36086 -14.89628 -14.76478 -14.52639 -14.33866 -14.25345 -14.14439 -14.11753 -13.73904 -13.27352 -13.25288 -13.17310 -12.75942 -12.71123 -12.60113 -12.25111 -12.09844 -11.98407 -11.71090 -11.48989 -11.30373 -11.10259 -10.80947 -10.41403 -9.72222 -9.23706 -9.18437 -8.29506 -5.53555 -0.59784 0.27519 0.68420 1.18746 1.26167 1.26384 1.32159 1.84118 1.90385 2.28145 2.61491 2.76834 3.03618 3.24043 3.29676 3.47830 3.51084 3.68847 3.78615 3.88353 4.07606 4.11378 4.15316 4.23822 4.33305 4.40733 4.46154 4.56386 4.66189 4.69091 4.70723 4.76746 4.85661 4.91990 5.03720 5.15678 5.18879 5.20873 5.33247 5.46859 5.53171 5.56543 5.94135 6.01115 6.22390 6.62612 6.73842 6.89068 7.42574 7.97055 8.90373 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014198 B = 0.003545 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.687222 B = 7895.712490 C = 8611.404345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.035 4.035 3 C -0.140 4.140 4 C -0.064 4.064 5 C -0.132 4.132 6 C 0.049 3.951 7 O -0.195 6.195 8 C -0.050 4.050 9 C 0.594 3.406 10 O -0.550 6.550 11 N -0.684 5.684 12 C 0.145 3.855 13 H 0.114 0.886 14 C 0.104 3.896 15 N -0.620 5.620 16 C -0.228 4.228 17 H 0.078 0.922 18 C -0.022 4.022 19 N -0.943 5.943 20 Si 0.934 3.066 21 H -0.285 1.285 22 H -0.305 1.305 23 H -0.288 1.288 24 C 0.098 3.902 25 C 0.109 3.891 26 H 0.110 0.890 27 O -0.559 6.559 28 C -0.106 4.106 29 C -0.168 4.168 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.166 0.834 34 H 0.176 0.824 35 H 0.151 0.849 36 H 0.416 0.584 37 H 0.045 0.955 38 H 0.012 0.988 39 H 0.264 0.736 40 H 0.035 0.965 41 H 0.071 0.929 42 H 0.405 0.595 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.805 21.741 -17.079 27.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.035 4.035 3 C -0.158 4.158 4 C -0.081 4.081 5 C -0.151 4.151 6 C 0.001 3.999 7 O -0.097 6.097 8 C -0.100 4.100 9 C 0.380 3.620 10 O -0.431 6.431 11 N -0.334 5.334 12 C 0.040 3.960 13 H 0.131 0.869 14 C -0.022 4.022 15 N -0.348 5.348 16 C -0.357 4.357 17 H 0.096 0.904 18 C -0.218 4.218 19 N -0.590 5.590 20 Si 0.767 3.233 21 H -0.212 1.212 22 H -0.234 1.234 23 H -0.216 1.216 24 C -0.027 4.027 25 C 0.049 3.951 26 H 0.128 0.872 27 O -0.367 6.367 28 C -0.126 4.126 29 C -0.169 4.169 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.184 0.816 34 H 0.194 0.806 35 H 0.168 0.832 36 H 0.253 0.747 37 H 0.063 0.937 38 H 0.029 0.971 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.089 0.911 42 H 0.256 0.744 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.771 21.352 -16.778 27.571 hybrid contribution 0.117 -0.094 0.812 0.826 sum -4.654 21.258 -15.966 26.990 Atomic orbital electron populations 1.20905 0.88901 1.04201 1.03474 1.19578 0.97622 0.90249 0.96036 1.21171 0.94560 0.98097 1.01954 1.21511 0.94241 0.97683 0.94689 1.20405 1.01597 0.87068 1.06005 1.20357 0.93634 0.83898 1.02008 1.83980 1.34010 1.14973 1.76769 1.21708 0.86649 0.90025 1.11611 1.16929 0.84186 0.84215 0.76636 1.90842 1.35842 1.63804 1.52586 1.45573 1.08099 1.07635 1.72059 1.22051 0.99681 0.79537 0.94780 0.86857 1.22162 0.88004 0.98090 0.93939 1.44730 1.00983 1.75162 1.13886 1.18668 1.00163 1.31076 0.85768 0.90395 1.25365 1.00150 0.99860 0.96411 1.69918 1.40179 1.36054 1.12855 0.86158 0.81244 0.81502 0.74441 1.21229 1.23364 1.21573 1.22575 0.94087 0.98566 0.87436 1.23045 0.90320 0.94700 0.87083 0.87244 1.86408 1.41088 1.54542 1.54633 1.22942 0.98944 0.91128 0.99636 1.19976 0.93308 0.93688 1.09886 0.90062 0.88549 0.91680 0.81638 0.80644 0.83167 0.74694 0.93707 0.97066 0.92691 0.94690 0.91074 0.74357 0.80535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 9.96 71.24 0.71 -0.85 16 2 C -0.03 -0.64 5.88 -19.89 -0.12 -0.76 16 3 C -0.14 -1.85 9.63 22.04 0.21 -1.64 16 4 C -0.06 -0.82 10.01 22.31 0.22 -0.60 16 5 C -0.13 -2.52 10.07 22.35 0.23 -2.30 16 6 C 0.05 1.31 7.41 23.07 0.17 1.48 16 7 O -0.19 -6.14 10.28 -13.02 -0.13 -6.28 16 8 C -0.05 -1.68 7.07 24.00 0.17 -1.52 16 9 C 0.59 22.18 7.79 86.53 0.67 22.85 16 10 O -0.55 -23.07 16.56 -4.22 -0.07 -23.14 16 11 N -0.68 -24.01 4.78 -440.61 -2.11 -26.12 16 12 C 0.14 5.10 3.13 46.18 0.14 5.24 16 13 H 0.11 3.81 7.70 -2.39 -0.02 3.79 16 14 C 0.10 4.71 4.92 86.73 0.43 5.13 16 15 N -0.62 -29.34 3.20 -691.55 -2.22 -31.56 16 16 C -0.23 -13.01 10.56 84.03 0.89 -12.12 16 17 H 0.08 4.64 8.06 -2.91 -0.02 4.62 16 18 C -0.02 -1.33 5.43 84.86 0.46 -0.87 16 19 N -0.94 -59.97 13.97 21.65 0.30 -59.67 16 20 Si 0.93 51.09 24.40 68.60 1.67 52.76 16 21 H -0.28 -15.48 6.83 99.48 0.68 -14.80 16 22 H -0.31 -16.61 7.11 99.48 0.71 -15.90 16 23 H -0.29 -15.87 6.89 99.48 0.69 -15.18 16 24 C 0.10 3.44 6.95 86.93 0.60 4.04 16 25 C 0.11 3.03 4.23 32.06 0.14 3.17 16 26 H 0.11 2.62 8.14 -2.38 -0.02 2.60 16 27 O -0.56 -12.32 12.63 -148.98 -1.88 -14.20 16 28 C -0.11 -3.09 10.52 23.79 0.25 -2.84 16 29 C -0.17 -4.30 6.15 -20.23 -0.12 -4.43 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.10 0.77 8.08 -2.39 -0.02 0.75 16 32 H 0.06 0.93 7.91 -2.39 -0.02 0.91 16 33 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 34 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 35 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 36 H 0.42 13.59 7.91 -92.71 -0.73 12.85 16 37 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.01 0.61 3.42 -2.39 -0.01 0.60 16 39 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 40 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.40 4.84 9.12 -74.06 -0.68 4.16 16 43 H 0.18 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -79.51 359.80 0.24 -79.28 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -0.39 Total: 14.93 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 5.05 Total: 14.00 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -4.02 Total: -117.34 kcal Atomic # 8 Polarization: -41.54 SS G_CDS: -2.09 Total: -43.62 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 1.67 Total: 52.76 kcal Total: -79.51 0.24 -79.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084100310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.461 kcal (2) G-P(sol) polarization free energy of solvation -79.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds