Wall clock time and date at job start Sat Apr 11 2020 02:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46987 * 247.52129 * 3 2 1 5 5 C 1.37094 * 119.99941 * 96.19895 * 4 3 2 6 6 H 1.08008 * 120.00193 * 146.41798 * 5 4 3 7 7 C 1.38951 * 120.00245 * 326.69117 * 5 4 3 8 8 N 1.31416 * 119.99780 * 4.63832 * 7 5 4 9 9 Si 1.86795 * 120.00610 * 184.63947 * 7 5 4 10 10 H 1.48508 * 109.47093 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47302 * 119.99911 * 9 7 5 12 12 H 1.48504 * 109.47143 * 240.00128 * 9 7 5 13 13 C 1.34775 * 120.00011 * 276.19062 * 4 3 2 14 14 O 1.21290 * 120.00116 * 0.02562 * 13 4 3 15 15 C 1.50704 * 120.00064 * 180.02562 * 13 4 3 16 16 H 1.09002 * 109.58540 * 349.75193 * 15 13 4 17 17 C 1.53191 * 109.58626 * 110.02990 * 15 13 4 18 18 C 1.53043 * 109.31232 * 174.42266 * 17 15 13 19 19 C 1.53044 * 109.53858 * 298.63865 * 18 17 15 20 20 C 1.53195 * 109.31343 * 61.36038 * 19 18 17 21 21 N 1.46920 * 108.77601 * 305.36953 * 20 19 18 22 22 C 1.34778 * 120.62761 * 233.62507 * 21 20 19 23 23 O 1.21692 * 120.00125 * 186.29652 * 22 21 20 24 24 C 1.46658 * 120.00139 * 6.30199 * 22 21 20 25 25 C 1.36544 * 125.98891 * 187.41018 * 24 22 21 26 26 C 1.40368 * 106.70747 * 179.90811 * 25 24 22 27 27 C 1.35126 * 107.11295 * 0.35873 * 26 25 24 28 28 O 1.33925 * 108.77164 * 359.77419 * 27 26 25 29 29 H 4.40634 * 5.51479 * 179.97438 * 4 1 2 30 30 H 1.08999 * 109.46741 * 127.52338 * 3 2 1 31 31 H 1.09003 * 109.47334 * 7.52401 * 3 2 1 32 32 H 0.96995 * 120.00101 * 180.02562 * 8 7 5 33 33 H 1.08990 * 109.49764 * 294.37616 * 17 15 13 34 34 H 1.08999 * 109.49834 * 54.44275 * 17 15 13 35 35 H 1.09001 * 109.45743 * 58.65315 * 18 17 15 36 36 H 1.08991 * 109.46011 * 178.61615 * 18 17 15 37 37 H 1.09000 * 109.50020 * 181.31392 * 19 18 17 38 38 H 1.09006 * 109.49608 * 301.38356 * 19 18 17 39 39 H 1.09008 * 109.58385 * 65.15449 * 20 19 18 40 40 H 1.08998 * 109.58693 * 185.57621 * 20 19 18 41 41 H 1.08003 * 126.64483 * 0.04158 * 25 24 22 42 42 H 1.07995 * 126.44157 * 180.15698 * 26 25 24 43 43 H 1.08005 * 125.61798 * 179.78327 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.5290 1.2763 5 6 3.4838 -0.3308 2.2852 6 1 4.2915 -0.0766 2.9557 7 6 2.8029 -1.5319 2.4419 8 7 1.8859 -1.8859 1.5696 9 14 3.1908 -2.6433 3.8922 10 1 4.2543 -2.0217 4.7217 11 1 1.9678 -2.8306 4.7134 12 1 3.6593 -3.9616 3.3941 13 6 3.2394 1.8602 1.4584 14 8 2.9297 2.6208 0.5659 15 6 3.7420 2.4037 2.7711 16 1 3.7960 1.5981 3.5035 17 6 5.1335 3.0137 2.5753 18 6 5.5790 3.6861 3.8760 19 6 4.6038 4.8110 4.2307 20 6 3.2063 4.2213 4.4452 21 7 2.8302 3.4504 3.2524 22 6 1.6708 3.6989 2.6116 23 8 1.3156 2.9806 1.6958 24 6 0.8374 4.8352 3.0179 25 6 -0.4164 5.1164 2.5558 26 6 -0.8355 6.2846 3.2116 27 6 0.1712 6.6649 4.0287 28 8 1.1774 5.7891 3.9093 29 1 -1.0501 0.0001 -0.0002 30 1 3.0090 0.6268 -0.8151 31 1 3.0098 -1.0180 -0.1346 32 1 1.4103 -2.7241 1.6791 33 1 5.8412 2.2281 2.3110 34 1 5.0969 3.7544 1.7765 35 1 5.5916 2.9497 4.6796 36 1 6.5790 4.0997 3.7470 37 1 4.9346 5.3046 5.1446 38 1 4.5724 5.5354 3.4168 39 1 3.2161 3.5656 5.3160 40 1 2.4894 5.0275 4.6004 41 1 -0.9777 4.5486 1.8285 42 1 -1.7830 6.7869 3.0842 43 1 0.1654 7.5322 4.6723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281020607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:30:53 Heat of formation + Delta-G solvation = 53.673532 kcal Electronic energy + Delta-G solvation = -29906.728579 eV Core-core repulsion = 25922.651172 eV Total energy + Delta-G solvation = -3984.077407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.59148 -40.07695 -37.66142 -36.92240 -34.77975 -33.20713 -32.39441 -31.78878 -31.41421 -30.66171 -29.50098 -26.64348 -25.38227 -24.43674 -23.36513 -22.50849 -21.66895 -20.46730 -19.80526 -18.96262 -17.84522 -17.14239 -16.64484 -16.28904 -16.21416 -15.71181 -15.14681 -14.58361 -14.37225 -14.29216 -14.06568 -13.85599 -13.63467 -13.29616 -13.14957 -12.99090 -12.74280 -12.60733 -12.44245 -12.12463 -11.76360 -11.49631 -11.45447 -11.17521 -11.06803 -10.81186 -10.68287 -10.49632 -10.35297 -10.26465 -9.91889 -9.34603 -9.03886 -8.92607 -8.56187 -8.39370 -8.25581 -8.03358 -7.43786 -6.23961 -3.97842 1.34453 2.51365 2.76749 3.13100 3.21238 3.24739 3.33046 3.72318 4.00737 4.20937 4.29927 4.61426 4.67911 4.89983 4.98228 5.03130 5.07054 5.10761 5.17114 5.21973 5.49490 5.55460 5.64347 5.80751 5.85758 5.92154 5.96273 5.99649 6.01727 6.14102 6.20417 6.26785 6.27483 6.38695 6.46147 6.63712 6.86554 6.97280 7.02683 7.11698 7.41178 7.45999 7.83893 7.95253 8.41857 8.70677 9.15841 9.31952 9.59997 10.05649 10.74794 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012115 B = 0.005239 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.690180 B = 5343.178954 C = 6296.479546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.080 4.080 3 C 0.251 3.749 4 N -0.445 5.445 5 C -0.346 4.346 6 H 0.092 0.908 7 C 0.044 3.956 8 N -0.855 5.855 9 Si 0.916 3.084 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.281 1.281 13 C 0.491 3.509 14 O -0.566 6.566 15 C 0.138 3.862 16 H 0.103 0.897 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.132 4.132 20 C 0.095 3.905 21 N -0.597 5.597 22 C 0.574 3.426 23 O -0.441 6.441 24 C -0.052 4.052 25 C -0.135 4.135 26 C -0.220 4.220 27 C -0.036 4.036 28 O -0.160 6.160 29 H 0.191 0.809 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.268 0.732 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.107 0.893 41 H 0.157 0.843 42 H 0.151 0.849 43 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.993 12.754 7.924 15.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 C -0.081 4.081 3 C 0.129 3.871 4 N -0.165 5.165 5 C -0.473 4.473 6 H 0.110 0.890 7 C -0.162 4.162 8 N -0.491 5.491 9 Si 0.742 3.258 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.207 1.207 13 C 0.279 3.721 14 O -0.449 6.449 15 C 0.032 3.968 16 H 0.121 0.879 17 C -0.159 4.159 18 C -0.155 4.155 19 C -0.170 4.170 20 C -0.027 4.027 21 N -0.333 5.333 22 C 0.359 3.641 23 O -0.311 6.311 24 C -0.104 4.104 25 C -0.156 4.156 26 C -0.239 4.239 27 C -0.105 4.105 28 O -0.057 6.057 29 H 0.208 0.792 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.124 0.876 41 H 0.175 0.825 42 H 0.169 0.831 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.815 12.507 7.041 14.467 hybrid contribution -0.477 -0.620 0.991 1.262 sum 1.338 11.887 8.031 14.408 Atomic orbital electron populations 1.23973 0.95155 1.07062 1.04334 1.22982 0.94199 0.94585 0.96365 1.17946 0.84357 0.99049 0.85751 1.43342 1.57521 1.03315 1.12312 1.19446 1.17136 1.00797 1.09936 0.88994 1.25458 0.94743 0.98510 0.97518 1.69952 1.22841 1.22582 1.33697 0.86055 0.78281 0.79947 0.81487 1.19348 1.20764 1.20701 1.19546 0.81333 0.82950 0.88279 1.90571 1.52339 1.57201 1.44793 1.21205 0.88488 0.89400 0.97684 0.87948 1.21782 0.95286 1.00756 0.98060 1.21524 0.98423 0.97755 0.97800 1.21896 0.94972 0.98303 1.01822 1.22178 0.97283 0.96018 0.87191 1.47625 1.19262 1.37503 1.28946 1.16816 0.81383 0.83030 0.82829 1.91200 1.68434 1.45397 1.26102 1.22647 0.97528 0.93406 0.96821 1.21939 0.94575 0.97584 1.01468 1.21781 1.01473 0.99176 1.01436 1.24403 0.87307 0.96052 1.02704 1.84190 1.39858 1.31354 1.50304 0.79224 0.92574 0.88099 0.92085 0.90420 0.91132 0.91592 0.91735 0.91052 0.91562 0.91529 0.87626 0.82512 0.83105 0.77994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.29 19.25 29.55 0.57 -6.72 16 2 C -0.08 -2.15 11.21 -37.12 -0.42 -2.56 16 3 C 0.25 6.53 5.06 -6.83 -0.03 6.49 16 4 N -0.44 -11.58 2.59 -117.93 -0.31 -11.88 16 5 C -0.35 -8.75 8.44 -14.93 -0.13 -8.87 16 6 H 0.09 2.15 6.53 -52.48 -0.34 1.81 16 7 C 0.04 1.12 5.33 -17.47 -0.09 1.03 16 8 N -0.85 -22.94 8.99 55.50 0.50 -22.44 16 9 Si 0.92 19.61 29.55 -169.99 -5.02 14.59 16 10 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 13 C 0.49 12.31 4.68 -10.98 -0.05 12.25 16 14 O -0.57 -15.68 13.42 -20.13 -0.27 -15.95 16 15 C 0.14 2.80 2.88 -68.75 -0.20 2.61 16 16 H 0.10 2.12 5.87 -51.93 -0.30 1.82 16 17 C -0.12 -1.98 5.35 -26.61 -0.14 -2.13 16 18 C -0.12 -1.47 5.88 -26.69 -0.16 -1.63 16 19 C -0.13 -1.57 6.08 -26.61 -0.16 -1.73 16 20 C 0.10 1.35 6.32 -3.71 -0.02 1.32 16 21 N -0.60 -11.38 2.97 -168.07 -0.50 -11.88 16 22 C 0.57 12.37 7.24 -12.86 -0.09 12.27 16 23 O -0.44 -11.57 12.13 -20.48 -0.25 -11.81 16 24 C -0.05 -0.92 6.82 -36.80 -0.25 -1.17 16 25 C -0.14 -2.18 10.63 -39.39 -0.42 -2.60 16 26 C -0.22 -2.65 10.87 -39.89 -0.43 -3.08 16 27 C -0.04 -0.39 12.08 29.63 0.36 -0.03 16 28 O -0.16 -2.24 7.15 5.00 0.04 -2.20 16 29 H 0.19 4.10 7.80 -54.09 -0.42 3.68 16 30 H 0.06 1.42 7.62 -51.93 -0.40 1.02 16 31 H 0.10 2.61 6.81 -51.93 -0.35 2.26 16 32 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 40 H 0.11 1.42 3.81 -54.92 -0.21 1.21 16 41 H 0.16 2.59 8.06 -52.48 -0.42 2.16 16 42 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 43 H 0.20 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 354.17 15.07 5.34 5.34 Total: -1.00 -34.11 354.17 -7.54 -41.65 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.39 Total: 9.16 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -1.67 Total: 5.45 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.31 Total: -46.21 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.48 Total: -29.97 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.11 -7.54 -41.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281020607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.320 kcal (2) G-P(sol) polarization free energy of solvation -34.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds