Wall clock time and date at job start Sat Apr 11 2020 02:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46896 * 110.99810 * 176.05144 * 12 2 1 14 14 C 1.46898 * 110.99849 * 300.00319 * 12 2 1 15 15 C 1.50699 * 109.46914 * 170.00149 * 14 12 2 16 16 C 1.34739 * 125.66509 * 89.71708 * 15 14 12 17 17 C 1.40932 * 107.03120 * 179.85127 * 16 15 14 18 18 C 1.35947 * 106.73934 * 0.40635 * 17 16 15 19 19 C 1.47789 * 125.93206 * 179.77203 * 18 17 16 20 20 C 1.39616 * 120.14504 * 359.97438 * 19 18 17 21 21 C 1.37936 * 119.84833 * 180.02562 * 20 19 18 22 22 C 1.38372 * 120.15161 * 0.02562 * 21 20 19 23 23 C 1.38345 * 120.29509 * 359.97438 * 22 21 20 24 24 N 1.48015 * 119.92791 * 180.02562 * 23 22 21 25 25 O 1.21801 * 119.99737 * 359.97438 * 24 23 22 26 26 O 1.21795 * 120.00193 * 179.97438 * 24 23 22 27 27 C 1.37976 * 120.14631 * 359.76174 * 23 22 21 28 28 O 1.34302 * 125.66441 * 270.02308 * 15 14 12 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.47680 * 59.99996 * 13 12 2 34 34 H 1.09002 * 109.47001 * 180.02562 * 13 12 2 35 35 H 1.09001 * 109.47142 * 300.00084 * 13 12 2 36 36 H 1.09005 * 109.47272 * 289.99844 * 14 12 2 37 37 H 1.08997 * 109.47709 * 50.00013 * 14 12 2 38 38 H 1.07998 * 126.48127 * 359.97438 * 16 15 14 39 39 H 1.07998 * 126.63268 * 180.15406 * 17 16 15 40 40 H 1.08003 * 120.07459 * 359.97438 * 20 19 18 41 41 H 1.08005 * 119.91921 * 180.02562 * 21 20 19 42 42 H 1.08000 * 119.85559 * 179.97438 * 22 21 20 43 43 H 1.07995 * 120.07491 * 180.25671 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 3.4850 -0.7943 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8579 -0.8909 3.6159 16 6 2.9928 -0.8520 4.3411 17 6 2.8650 -1.8173 5.3600 18 6 1.6502 -2.4043 5.1930 19 6 1.0855 -3.4826 6.0312 20 6 1.8158 -3.9890 7.1080 21 6 1.2830 -4.9957 7.8860 22 6 0.0280 -5.5041 7.6010 23 6 -0.7009 -5.0068 6.5355 24 7 -2.0428 -5.5562 6.2383 25 8 -2.5039 -6.4454 6.9313 26 8 -2.6860 -5.1190 5.3010 27 6 -0.1821 -3.9961 5.7526 28 8 1.0505 -1.8323 4.1313 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.7088 1.1611 -3.4845 33 1 3.9186 0.2053 1.1592 34 1 3.8209 -1.3114 2.0860 35 1 3.8030 -1.3529 0.3068 36 1 2.0518 0.9348 2.5280 37 1 0.4722 0.1325 2.3564 38 1 3.8394 -0.2024 4.1744 39 1 3.5931 -2.0490 6.1231 40 1 2.7960 -3.5939 7.3307 41 1 1.8468 -5.3880 8.7195 42 1 -0.3843 -6.2926 8.2130 43 1 -0.7539 -3.6059 4.9236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132290708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:31:24 Heat of formation + Delta-G solvation = 51.094624 kcal Electronic energy + Delta-G solvation = -27103.790634 eV Core-core repulsion = 23119.601397 eV Total energy + Delta-G solvation = -3984.189237 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.66892 -42.33627 -39.65962 -37.19865 -36.74715 -33.57733 -33.32259 -32.38239 -32.19175 -29.95848 -28.91436 -26.93701 -26.67103 -24.81353 -23.86691 -23.14241 -22.53372 -21.42269 -20.52941 -19.54950 -19.36992 -18.80695 -17.71627 -17.20281 -16.71541 -16.30743 -16.20635 -15.66008 -15.37730 -14.77627 -14.46705 -14.14598 -13.99143 -13.59466 -13.40865 -13.19469 -12.95392 -12.62357 -12.43995 -12.23306 -12.07847 -11.86638 -11.74008 -11.36238 -11.30638 -11.23293 -11.04327 -10.79029 -10.66202 -10.50702 -10.23463 -10.13280 -10.02221 -9.94405 -9.76000 -8.99473 -8.49401 -8.08191 -7.36422 -6.07169 -4.12186 -0.47737 0.20098 1.00816 1.14272 1.80997 2.49368 2.67664 3.05903 3.29249 3.33989 3.36967 3.88946 4.05410 4.29138 4.34727 4.37203 4.50104 4.67239 4.83104 4.88996 5.06070 5.10835 5.24962 5.26393 5.42638 5.51473 5.55745 5.68523 5.78082 5.83603 5.93737 6.05495 6.07311 6.17248 6.26622 6.44030 6.67534 6.75175 6.96806 7.02495 7.13115 7.39304 7.43066 7.58719 7.75737 8.07092 8.21397 8.45774 8.92841 9.53011 10.99624 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014291 B = 0.002618 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.780706 B =10693.676374 C =11832.532469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.214 3.786 3 H 0.002 0.998 4 C -0.507 4.507 5 H 0.064 0.936 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.287 1.287 10 H -0.278 1.278 11 H -0.276 1.276 12 N -0.532 5.532 13 C 0.032 3.968 14 C 0.114 3.886 15 C 0.057 3.943 16 C -0.223 4.223 17 C -0.163 4.163 18 C -0.012 4.012 19 C 0.010 3.990 20 C -0.058 4.058 21 C -0.109 4.109 22 C -0.062 4.062 23 C -0.036 4.036 24 N 0.027 4.973 25 O -0.161 6.161 26 O -0.151 6.151 27 C -0.047 4.047 28 O -0.157 6.157 29 H 0.088 0.912 30 H 0.037 0.963 31 H 0.009 0.991 32 H 0.262 0.738 33 H 0.015 0.985 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.096 0.904 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.153 0.847 42 H 0.155 0.845 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.574 -7.221 22.575 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.109 3.891 3 H 0.020 0.980 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.213 1.213 10 H -0.203 1.203 11 H -0.201 1.201 12 N -0.258 5.258 13 C -0.116 4.116 14 C -0.014 4.014 15 C 0.005 3.995 16 C -0.243 4.243 17 C -0.182 4.182 18 C -0.062 4.062 19 C 0.009 3.991 20 C -0.076 4.076 21 C -0.128 4.128 22 C -0.081 4.081 23 C -0.119 4.119 24 N 0.547 4.453 25 O -0.376 6.376 26 O -0.369 6.369 27 C -0.066 4.066 28 O -0.052 6.052 29 H 0.107 0.893 30 H 0.056 0.944 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.169 0.831 39 H 0.168 0.832 40 H 0.166 0.834 41 H 0.170 0.830 42 H 0.172 0.828 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.640 -7.390 22.437 23.902 hybrid contribution 0.470 0.273 -0.927 1.075 sum 4.111 -7.117 21.510 23.027 Atomic orbital electron populations 1.21904 0.97517 0.99996 1.00053 1.19297 0.92468 0.92053 0.85261 0.98038 1.21074 1.31400 1.12445 0.89582 0.91837 1.24922 0.95098 0.95051 0.99037 1.69872 1.36646 1.22940 1.23693 0.86555 0.79044 0.79828 0.81970 1.21288 1.20325 1.20144 1.62167 1.09914 1.52559 1.01156 1.22318 0.88244 0.99378 1.01705 1.20740 1.03113 0.91630 0.85895 1.22968 0.89548 0.90595 0.96431 1.21521 0.99845 1.04342 0.98545 1.21704 0.96442 0.98662 1.01423 1.19867 0.94135 0.99813 0.92417 1.17600 0.92711 0.94196 0.94581 1.21527 0.99919 0.94271 0.91877 1.21084 0.94433 0.96672 1.00588 1.21141 0.93973 0.98836 0.94187 1.20986 0.85765 1.02567 1.02579 1.43606 1.02500 0.99558 0.99635 1.94521 1.72703 1.22551 1.47870 1.94602 1.59056 1.62450 1.20742 1.21190 0.94881 0.92309 0.98188 1.84068 1.42944 1.41861 1.36338 0.89347 0.94407 0.97232 0.92805 0.96672 0.93416 0.90303 0.92101 0.88562 0.83101 0.83243 0.83436 0.82955 0.82761 0.82176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.76 37.16 0.33 -2.93 16 2 C 0.21 5.23 2.06 -68.87 -0.14 5.08 16 3 H 0.00 0.05 8.14 -51.92 -0.42 -0.37 16 4 C -0.51 -13.54 7.93 -34.44 -0.27 -13.82 16 5 H 0.06 1.70 6.39 -52.49 -0.34 1.36 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -24.91 11.32 55.43 0.63 -24.28 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.53 -11.09 4.61 -237.73 -1.10 -12.18 16 13 C 0.03 0.60 9.00 60.06 0.54 1.14 16 14 C 0.11 1.98 5.31 -4.98 -0.03 1.95 16 15 C 0.06 0.88 6.23 -35.55 -0.22 0.66 16 16 C -0.22 -2.90 9.25 -39.80 -0.37 -3.27 16 17 C -0.16 -1.82 10.26 -39.38 -0.40 -2.23 16 18 C -0.01 -0.16 7.03 -36.50 -0.26 -0.41 16 19 C 0.01 0.10 5.87 -104.98 -0.62 -0.51 16 20 C -0.06 -0.39 9.56 -39.18 -0.37 -0.77 16 21 C -0.11 -0.60 10.03 -39.64 -0.40 -0.99 16 22 C -0.06 -0.47 9.55 -39.49 -0.38 -0.85 16 23 C -0.04 -0.39 6.85 -80.00 -0.55 -0.94 16 24 N 0.03 0.35 4.45 33.93 0.15 0.50 16 25 O -0.16 -2.12 18.44 -29.46 -0.54 -2.67 16 26 O -0.15 -2.25 18.44 -29.46 -0.54 -2.80 16 27 C -0.05 -0.53 9.23 -39.18 -0.36 -0.90 16 28 O -0.16 -2.47 10.41 4.66 0.05 -2.42 16 29 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 30 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.01 0.19 6.20 -51.93 -0.32 -0.13 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.79 6.07 -51.93 -0.32 0.47 16 35 H 0.08 1.61 6.23 -51.93 -0.32 1.28 16 36 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 37 H 0.10 1.69 5.83 -51.93 -0.30 1.39 16 38 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.15 1.13 7.26 -52.49 -0.38 0.75 16 40 H 0.15 0.61 6.99 -52.48 -0.37 0.24 16 41 H 0.15 0.31 8.06 -52.48 -0.42 -0.12 16 42 H 0.15 0.90 7.60 -52.49 -0.40 0.51 16 43 H 0.16 2.02 7.46 -52.49 -0.39 1.62 16 LS Contribution 363.85 15.07 5.48 5.48 Total: -1.00 -30.48 363.85 -9.61 -40.09 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -5.12 Total: -0.50 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -3.60 Total: -17.24 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.32 Total: -35.96 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -1.04 Total: -7.89 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.48 -9.61 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132290708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.183 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds