Wall clock time and date at job start Sat Apr 11 2020 02:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46896 * 110.99810 * 176.05144 * 12 2 1 14 14 C 1.46898 * 110.99849 * 300.00319 * 12 2 1 15 15 C 1.50699 * 109.46914 * 170.00149 * 14 12 2 16 16 C 1.34739 * 125.66509 * 89.71708 * 15 14 12 17 17 C 1.40932 * 107.03120 * 179.85127 * 16 15 14 18 18 C 1.35947 * 106.73934 * 0.40635 * 17 16 15 19 19 C 1.47789 * 125.93206 * 179.77203 * 18 17 16 20 20 C 1.39616 * 120.14504 * 359.97438 * 19 18 17 21 21 C 1.37936 * 119.84833 * 180.02562 * 20 19 18 22 22 C 1.38372 * 120.15161 * 0.02562 * 21 20 19 23 23 C 1.38345 * 120.29509 * 359.97438 * 22 21 20 24 24 N 1.48015 * 119.92791 * 180.02562 * 23 22 21 25 25 O 1.21801 * 119.99737 * 359.97438 * 24 23 22 26 26 O 1.21795 * 120.00193 * 179.97438 * 24 23 22 27 27 C 1.37976 * 120.14631 * 359.76174 * 23 22 21 28 28 O 1.34302 * 125.66441 * 270.02308 * 15 14 12 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.47680 * 59.99996 * 13 12 2 34 34 H 1.09002 * 109.47001 * 180.02562 * 13 12 2 35 35 H 1.09001 * 109.47142 * 300.00084 * 13 12 2 36 36 H 1.09005 * 109.47272 * 289.99844 * 14 12 2 37 37 H 1.08997 * 109.47709 * 50.00013 * 14 12 2 38 38 H 1.07998 * 126.48127 * 359.97438 * 16 15 14 39 39 H 1.07998 * 126.63268 * 180.15406 * 17 16 15 40 40 H 1.08003 * 120.07459 * 359.97438 * 20 19 18 41 41 H 1.08005 * 119.91921 * 180.02562 * 21 20 19 42 42 H 1.08000 * 119.85559 * 179.97438 * 22 21 20 43 43 H 1.07995 * 120.07491 * 180.25671 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 3.4850 -0.7943 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8579 -0.8909 3.6159 16 6 2.9928 -0.8520 4.3411 17 6 2.8650 -1.8173 5.3600 18 6 1.6502 -2.4043 5.1930 19 6 1.0855 -3.4826 6.0312 20 6 1.8158 -3.9890 7.1080 21 6 1.2830 -4.9957 7.8860 22 6 0.0280 -5.5041 7.6010 23 6 -0.7009 -5.0068 6.5355 24 7 -2.0428 -5.5562 6.2383 25 8 -2.5039 -6.4454 6.9313 26 8 -2.6860 -5.1190 5.3010 27 6 -0.1821 -3.9961 5.7526 28 8 1.0505 -1.8323 4.1313 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.7088 1.1611 -3.4845 33 1 3.9186 0.2053 1.1592 34 1 3.8209 -1.3114 2.0860 35 1 3.8030 -1.3529 0.3068 36 1 2.0518 0.9348 2.5280 37 1 0.4722 0.1325 2.3564 38 1 3.8394 -0.2024 4.1744 39 1 3.5931 -2.0490 6.1231 40 1 2.7960 -3.5939 7.3307 41 1 1.8468 -5.3880 8.7195 42 1 -0.3843 -6.2926 8.2130 43 1 -0.7539 -3.6059 4.9236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132290708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:31:24 Heat of formation + Delta-G solvation = 34.164135 kcal Electronic energy + Delta-G solvation = -27104.524795 eV Core-core repulsion = 23119.601397 eV Total energy + Delta-G solvation = -3984.923398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.67378 -43.31320 -40.36640 -38.85570 -37.76696 -35.07944 -34.45842 -33.55388 -32.87214 -31.48064 -30.44829 -28.19319 -27.67377 -26.62742 -25.20823 -23.91679 -23.66830 -22.37767 -21.75152 -21.12857 -20.26036 -19.78624 -18.69882 -18.48996 -17.93827 -17.50327 -17.29977 -16.92485 -16.37431 -16.10114 -15.83678 -15.53133 -15.12950 -14.77528 -14.42545 -14.33974 -14.03883 -13.90242 -13.65341 -13.50100 -13.16079 -12.98444 -12.89432 -12.85095 -12.72542 -12.65726 -12.40115 -12.39174 -12.32030 -12.15368 -12.00678 -11.73822 -11.30535 -10.97417 -10.75188 -10.60915 -10.52974 -9.14485 -8.93936 -8.14045 -6.26036 -1.33043 -0.55329 0.20326 0.28877 0.85483 1.40953 1.43351 1.50347 1.58600 1.74169 2.35890 2.40698 3.09133 3.14307 3.36745 3.39774 3.63620 3.68531 3.87488 3.95545 3.99695 4.04218 4.26116 4.41562 4.46026 4.55549 4.59819 4.69296 4.76222 4.81663 4.85016 4.93703 4.96299 4.99432 5.03433 5.07898 5.10980 5.21707 5.40765 5.43403 5.53514 5.67962 5.71697 6.10440 6.20949 6.31756 6.37696 6.61413 6.86620 7.42902 8.91628 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014291 B = 0.002618 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.780706 B =10693.676374 C =11832.532469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.220 3.780 3 H -0.025 1.025 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.959 3.041 9 H -0.283 1.283 10 H -0.269 1.269 11 H -0.276 1.276 12 N -0.547 5.547 13 C 0.039 3.961 14 C 0.119 3.881 15 C 0.014 3.986 16 C -0.207 4.207 17 C -0.154 4.154 18 C -0.019 4.019 19 C -0.011 4.011 20 C -0.034 4.034 21 C -0.088 4.088 22 C -0.050 4.050 23 C -0.057 4.057 24 N 0.028 4.972 25 O -0.138 6.138 26 O -0.224 6.224 27 C -0.069 4.069 28 O -0.190 6.190 29 H 0.064 0.936 30 H 0.025 0.975 31 H 0.032 0.968 32 H 0.263 0.737 33 H 0.018 0.982 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.170 0.830 39 H 0.197 0.803 40 H 0.188 0.812 41 H 0.206 0.794 42 H 0.178 0.822 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.794 -8.877 26.268 28.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.114 3.886 3 H -0.007 1.007 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.785 3.215 9 H -0.209 1.209 10 H -0.194 1.194 11 H -0.201 1.201 12 N -0.272 5.272 13 C -0.109 4.109 14 C -0.008 4.008 15 C -0.037 4.037 16 C -0.227 4.227 17 C -0.173 4.173 18 C -0.068 4.068 19 C -0.012 4.012 20 C -0.051 4.051 21 C -0.105 4.105 22 C -0.069 4.069 23 C -0.140 4.140 24 N 0.543 4.457 25 O -0.363 6.363 26 O -0.425 6.425 27 C -0.088 4.088 28 O -0.087 6.087 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.037 0.963 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.187 0.813 39 H 0.214 0.786 40 H 0.206 0.794 41 H 0.222 0.778 42 H 0.195 0.805 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.833 -8.969 26.034 28.371 hybrid contribution -0.472 0.662 -1.785 1.961 sum 6.361 -8.308 24.249 26.410 Atomic orbital electron populations 1.21727 0.97589 0.99056 1.00001 1.19046 0.92397 0.90635 0.86567 1.00738 1.21375 1.31414 1.12415 0.90882 0.92319 1.25690 0.95296 0.95738 1.01836 1.69996 1.37511 1.24089 1.24234 0.85593 0.78875 0.78531 0.78532 1.20863 1.19352 1.20096 1.62033 1.11169 1.52732 1.01292 1.22252 0.87086 0.99552 1.02004 1.20589 1.02213 0.92618 0.85423 1.22619 0.91236 0.92408 0.97433 1.21838 0.98872 1.04070 0.97890 1.22145 0.96353 0.97194 1.01605 1.20541 0.94766 0.99931 0.91570 1.17788 0.92655 0.94583 0.96149 1.22060 1.00661 0.93080 0.89344 1.21703 0.93103 0.94927 1.00806 1.21643 0.94364 0.98513 0.92407 1.21159 0.84710 1.03652 1.04475 1.44009 1.03432 0.99199 0.99064 1.94456 1.73099 1.21902 1.46873 1.94615 1.60793 1.64348 1.22725 1.21041 0.95923 0.93571 0.98275 1.84025 1.44186 1.42561 1.37917 0.91731 0.95610 0.94914 0.92818 0.96323 0.90740 0.92325 0.90932 0.89990 0.81279 0.78613 0.79443 0.77756 0.80508 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.29 8.76 71.98 0.63 -5.66 16 2 C 0.22 11.18 2.06 44.17 0.09 11.27 16 3 H -0.02 -1.37 8.14 -2.38 -0.02 -1.39 16 4 C -0.52 -28.83 7.93 25.60 0.20 -28.63 16 5 H 0.06 3.22 6.39 -2.91 -0.02 3.21 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -52.81 11.32 21.45 0.24 -52.57 16 8 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 9 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 N -0.55 -23.48 4.61 -906.05 -4.18 -27.66 16 13 C 0.04 1.48 9.00 127.69 1.15 2.63 16 14 C 0.12 4.25 5.31 85.56 0.45 4.70 16 15 C 0.01 0.44 6.23 24.88 0.16 0.59 16 16 C -0.21 -4.90 9.25 22.13 0.20 -4.70 16 17 C -0.15 -2.86 10.26 22.40 0.23 -2.63 16 18 C -0.02 -0.45 7.03 24.27 0.17 -0.28 16 19 C -0.01 -0.20 5.87 -20.10 -0.12 -0.32 16 20 C -0.03 -0.27 9.56 22.53 0.22 -0.06 16 21 C -0.09 -0.41 10.03 22.23 0.22 -0.18 16 22 C -0.05 -0.57 9.55 22.33 0.21 -0.36 16 23 C -0.06 -1.21 6.85 36.34 0.25 -0.96 16 24 N 0.03 0.78 4.45 -46.55 -0.21 0.57 16 25 O -0.14 -3.57 18.44 18.88 0.35 -3.22 16 26 O -0.22 -7.46 18.44 18.89 0.35 -7.11 16 27 C -0.07 -1.64 9.23 22.53 0.21 -1.43 16 28 O -0.19 -6.19 10.41 -6.25 -0.07 -6.25 16 29 H 0.06 3.53 6.07 -2.39 -0.01 3.52 16 30 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.03 1.43 6.20 -2.39 -0.01 1.41 16 32 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 2.37 6.07 -2.39 -0.01 2.36 16 35 H 0.06 2.42 6.23 -2.39 -0.01 2.41 16 36 H 0.07 2.36 8.12 -2.38 -0.02 2.34 16 37 H 0.08 3.06 5.83 -2.39 -0.01 3.05 16 38 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 39 H 0.20 1.64 7.26 -2.91 -0.02 1.62 16 40 H 0.19 0.06 6.99 -2.91 -0.02 0.04 16 41 H 0.21 -0.99 8.06 -2.91 -0.02 -1.02 16 42 H 0.18 1.23 7.60 -2.91 -0.02 1.21 16 43 H 0.13 3.76 7.46 -2.91 -0.02 3.74 16 Total: -1.00 -73.01 363.85 4.29 -68.72 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.05 Total: 6.49 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 4.73 Total: -24.82 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -4.15 Total: -79.66 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: 0.63 Total: -16.58 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -73.01 4.29 -68.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132290708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.883 kcal (2) G-P(sol) polarization free energy of solvation -73.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds