Wall clock time and date at job start Sat Apr 11 2020 02:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09007 * 109.47255 * 2 1 4 4 C 1.52997 * 109.47554 * 239.99902 * 2 1 3 5 5 C 1.50704 * 109.46790 * 64.99580 * 4 2 1 6 6 C 1.39870 * 126.04200 * 269.69746 * 5 4 2 7 7 N 1.30838 * 108.20445 * 179.82057 * 6 5 4 8 8 N 1.40085 * 108.20341 * 0.43474 * 7 6 5 9 9 C 1.46499 * 126.03887 * 179.69727 * 8 7 6 10 10 C 1.34952 * 107.92746 * 359.72416 * 8 7 6 11 11 C 1.50704 * 109.47463 * 119.99880 * 2 1 3 12 12 O 1.20825 * 120.00252 * 120.00025 * 11 2 1 13 13 O 1.34265 * 119.99693 * 300.00223 * 11 2 1 14 14 C 1.35925 * 117.00092 * 175.00920 * 13 11 2 15 15 C 1.38825 * 120.02086 * 255.29329 * 14 13 11 16 16 C 1.38184 * 120.08008 * 179.74054 * 15 14 13 17 17 C 1.38155 * 120.12616 * 0.22939 * 16 15 14 18 18 C 1.38893 * 120.03781 * 0.02562 * 17 16 15 19 19 O 1.35760 * 120.03689 * 180.02562 * 18 17 16 20 20 C 1.34834 * 116.99474 * 174.40603 * 19 18 17 21 21 H 1.07991 * 120.00372 * 5.06928 * 20 19 18 22 22 C 1.38650 * 119.99538 * 185.06173 * 20 19 18 23 23 N 1.31553 * 120.00099 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 120.00212 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47312 * 89.99541 * 24 22 20 26 26 H 1.48504 * 109.46915 * 209.99634 * 24 22 20 27 27 H 1.48505 * 109.46789 * 329.99394 * 24 22 20 28 28 C 1.38570 * 120.02205 * 75.53947 * 14 13 11 29 29 H 1.09005 * 109.47410 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47115 * 300.00060 * 1 2 3 31 31 H 1.08996 * 109.47569 * 60.00396 * 1 2 3 32 32 H 1.08999 * 109.47850 * 184.99842 * 4 2 1 33 33 H 1.09003 * 109.46801 * 305.00578 * 4 2 1 34 34 H 1.08001 * 125.89725 * 359.97438 * 6 5 4 35 35 H 1.09000 * 109.47252 * 270.02770 * 9 8 7 36 36 H 1.08998 * 109.47250 * 30.02782 * 9 8 7 37 37 H 1.09000 * 109.47425 * 150.02503 * 9 8 7 38 38 H 1.07994 * 126.13052 * 180.02562 * 10 8 7 39 39 H 1.08001 * 119.95939 * 0.02562 * 15 14 13 40 40 H 1.08004 * 119.93665 * 180.25405 * 16 15 14 41 41 H 1.08004 * 119.98208 * 180.02562 * 17 16 15 42 42 H 0.97000 * 120.00324 * 180.02562 * 23 22 20 43 43 H 1.08006 * 120.06262 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4765 6 6 0.4599 -0.1069 -3.2071 7 7 0.4700 0.7477 -4.1978 8 7 1.6646 1.4767 -4.1347 9 6 2.0799 2.5327 -5.0613 10 6 2.3656 1.0340 -3.0699 11 6 2.0323 -0.7104 1.2305 12 8 2.7270 -1.6927 1.1197 13 8 1.7080 -0.2516 2.4499 14 6 2.1056 -0.9963 3.5153 15 6 1.1818 -1.7683 4.2066 16 6 1.5857 -2.5300 5.2865 17 6 2.9086 -2.5220 5.6846 18 6 3.8361 -1.7473 4.9999 19 8 5.1362 -1.7399 5.3908 20 6 6.0046 -1.0598 4.6153 21 1 5.6431 -0.4855 3.7752 22 6 7.3617 -1.0978 4.8966 23 7 8.2091 -0.4347 4.1398 24 14 7.9871 -2.0916 6.3495 25 1 8.2928 -3.4759 5.9075 26 1 9.2189 -1.4603 6.8875 27 1 6.9467 -2.1284 7.4085 28 6 3.4322 -0.9813 3.9152 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 3.1263 -0.7995 -1.2056 33 1 1.6053 -1.7198 -1.2951 34 1 -0.3263 -0.8147 -2.9895 35 1 2.6420 2.0929 -5.8851 36 1 1.1981 3.0398 -5.4530 37 1 2.7084 3.2512 -4.5353 38 1 3.3314 1.3950 -2.7486 39 1 0.1471 -1.7772 3.8971 40 1 0.8659 -3.1329 5.8201 41 1 3.2218 -3.1185 6.5288 42 1 9.1586 -0.4615 4.3363 43 1 4.1515 -0.3778 3.3813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841343597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:30:57 Heat of formation + Delta-G solvation = 0.178831 kcal Electronic energy + Delta-G solvation = -27075.766490 eV Core-core repulsion = 23089.369379 eV Total energy + Delta-G solvation = -3986.397111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.50187 -40.90085 -39.00658 -37.36310 -35.84792 -35.32380 -33.18738 -32.41005 -30.75162 -29.72978 -29.15293 -27.77155 -26.11013 -25.39743 -24.43540 -22.17415 -21.52258 -21.27364 -20.54175 -19.75521 -18.10973 -18.07242 -17.29225 -16.68310 -16.10951 -15.99220 -15.62891 -15.30589 -14.87360 -14.62924 -14.19918 -14.09202 -13.83566 -13.71632 -13.57804 -13.28835 -13.05805 -12.99798 -12.79030 -12.51323 -12.27444 -12.23839 -12.14830 -11.62461 -11.42962 -11.32022 -11.20937 -11.11894 -10.79942 -10.70615 -10.40972 -10.27868 -10.13339 -9.64015 -9.52620 -8.91007 -8.59437 -8.22432 -7.50198 -6.44668 -4.12094 1.63503 1.71851 2.11328 2.27877 2.40362 2.54243 3.14807 3.20432 3.25391 3.38363 4.21122 4.24823 4.37875 4.61536 4.68171 4.76737 4.79491 4.81698 4.85349 4.95183 5.05939 5.06183 5.22703 5.30707 5.37711 5.50796 5.61768 5.67583 5.69263 5.72651 5.87266 5.97062 6.05946 6.08509 6.12850 6.31654 6.39857 6.43237 6.75553 6.86952 6.95721 7.03423 7.07751 7.44496 7.45977 7.72391 7.96572 8.19191 8.89679 9.48537 10.62795 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014080 B = 0.002707 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.174870 B =10341.853697 C =12005.659007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.072 4.072 3 H 0.107 0.893 4 C -0.027 4.027 5 C -0.231 4.231 6 C 0.056 3.944 7 N -0.301 5.301 8 N -0.379 5.379 9 C 0.102 3.898 10 C 0.060 3.940 11 C 0.456 3.544 12 O -0.481 6.481 13 O -0.296 6.296 14 C 0.121 3.879 15 C -0.204 4.204 16 C -0.067 4.067 17 C -0.187 4.187 18 C 0.170 3.830 19 O -0.211 6.211 20 C -0.391 4.391 21 H 0.105 0.895 22 C 0.065 3.935 23 N -0.876 5.876 24 Si 0.906 3.094 25 H -0.272 1.272 26 H -0.281 1.281 27 H -0.259 1.259 28 C -0.219 4.219 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.183 0.817 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.175 0.825 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.280 0.720 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.651 3.936 -13.170 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 H 0.125 0.875 4 C -0.066 4.066 5 C -0.243 4.243 6 C -0.130 4.130 7 N -0.122 5.122 8 N -0.161 5.161 9 C -0.040 4.040 10 C -0.086 4.086 11 C 0.299 3.701 12 O -0.365 6.365 13 O -0.212 6.212 14 C 0.080 3.920 15 C -0.223 4.223 16 C -0.085 4.085 17 C -0.207 4.207 18 C 0.117 3.883 19 O -0.115 6.115 20 C -0.466 4.466 21 H 0.123 0.877 22 C -0.139 4.139 23 N -0.514 5.514 24 Si 0.731 3.269 25 H -0.198 1.198 26 H -0.207 1.207 27 H -0.183 1.183 28 C -0.238 4.238 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.199 0.801 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.193 0.807 39 H 0.135 0.865 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.090 0.910 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.621 4.177 -14.182 20.792 hybrid contribution 1.077 -0.488 1.133 1.637 sum -13.544 3.688 -13.049 19.165 Atomic orbital electron populations 1.21801 0.92035 1.02921 1.03315 1.21042 0.98349 1.00903 0.88889 0.87479 1.19767 1.01980 0.97410 0.87441 1.19959 0.97437 1.04201 1.02664 1.23822 0.98211 0.98130 0.92879 1.77348 1.02342 1.09373 1.23149 1.48450 1.14685 1.30176 1.22754 1.21854 1.01564 0.88043 0.92496 1.22437 0.98870 0.97433 0.89843 1.24090 0.77954 0.83498 0.84584 1.90732 1.33751 1.25514 1.86544 1.84514 1.72615 1.50047 1.13981 1.18235 0.92639 0.94087 0.87035 1.20571 0.98908 1.01885 1.00979 1.20488 0.94741 0.97513 0.95766 1.20319 0.92397 1.04295 1.03664 1.18852 0.85145 0.92685 0.91635 1.83593 1.13464 1.66136 1.48339 1.20757 0.87058 1.27680 1.11108 0.87742 1.24468 0.94322 0.96745 0.98322 1.69643 1.03420 1.40375 1.37951 0.86172 0.78491 0.79960 0.82233 1.19774 1.20697 1.18270 1.21321 0.95227 1.05462 1.01801 0.91998 0.91322 0.90886 0.89992 0.90068 0.80054 0.90790 0.89366 0.89379 0.80736 0.86550 0.85843 0.85909 0.90970 0.84489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.85 37.15 0.33 -1.02 16 2 C -0.07 -0.84 2.82 -91.78 -0.26 -1.09 16 3 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.03 -0.30 4.52 -27.88 -0.13 -0.43 16 5 C -0.23 -2.31 4.77 -105.05 -0.50 -2.81 16 6 C 0.06 0.55 10.65 -17.36 -0.18 0.37 16 7 N -0.30 -3.38 12.58 30.62 0.39 -2.99 16 8 N -0.38 -3.53 4.01 -68.16 -0.27 -3.81 16 9 C 0.10 0.53 11.47 59.85 0.69 1.22 16 10 C 0.06 0.55 11.40 -17.22 -0.20 0.35 16 11 C 0.46 7.53 7.12 36.01 0.26 7.79 16 12 O -0.48 -9.68 15.36 -18.75 -0.29 -9.97 16 13 O -0.30 -5.29 9.93 -23.62 -0.23 -5.52 16 14 C 0.12 2.43 5.18 -39.24 -0.20 2.23 16 15 C -0.20 -3.61 9.98 -39.38 -0.39 -4.00 16 16 C -0.07 -1.13 10.03 -39.63 -0.40 -1.53 16 17 C -0.19 -3.71 9.99 -39.37 -0.39 -4.10 16 18 C 0.17 4.02 6.65 -39.13 -0.26 3.76 16 19 O -0.21 -5.62 8.59 0.01 0.00 -5.62 16 20 C -0.39 -11.20 9.95 30.88 0.31 -10.89 16 21 H 0.11 3.11 5.43 -52.49 -0.29 2.82 16 22 C 0.07 1.84 5.49 -17.52 -0.10 1.74 16 23 N -0.88 -25.43 13.96 55.48 0.77 -24.65 16 24 Si 0.91 21.69 28.62 -169.99 -4.86 16.82 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 28 C -0.22 -5.05 8.60 -39.25 -0.34 -5.39 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 31 H 0.07 0.61 6.43 -51.93 -0.33 0.28 16 32 H 0.08 0.99 7.96 -51.93 -0.41 0.58 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 40 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 41 H 0.12 2.19 8.06 -52.48 -0.42 1.77 16 42 H 0.28 7.47 8.31 -40.82 -0.34 7.14 16 43 H 0.14 3.40 5.64 -52.48 -0.30 3.11 16 LS Contribution 372.86 15.07 5.62 5.62 Total: -1.00 -34.42 372.86 -6.19 -40.61 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.54 Total: 3.33 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -1.77 Total: -13.81 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.89 Total: -31.45 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.52 Total: -21.12 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.86 Total: 16.82 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.42 -6.19 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.789 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds