Wall clock time and date at job start Sat Apr 11 2020 02:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47158 * 2 1 4 4 C 1.36248 * 126.39862 * 269.97792 * 3 2 1 5 5 O 1.35190 * 125.01181 * 0.04244 * 4 3 2 6 6 N 1.30932 * 109.97081 * 180.02562 * 4 3 2 7 7 C 1.35534 * 109.72150 * 0.02562 * 6 4 3 8 8 C 1.40039 * 133.25863 * 180.02562 * 7 6 4 9 9 C 1.36182 * 120.09110 * 179.97438 * 8 7 6 10 10 C 1.40216 * 120.48711 * 0.02562 * 9 8 7 11 11 C 1.47369 * 119.95209 * 179.97438 * 10 9 8 12 12 O 1.21524 * 119.99733 * 185.04404 * 11 10 9 13 13 O 1.34770 * 119.99871 * 5.04188 * 11 10 9 14 14 C 1.45200 * 116.99935 * 185.03457 * 13 11 10 15 15 C 1.52992 * 109.47302 * 184.93868 * 14 13 11 16 16 C 1.50704 * 115.54892 * 54.24322 * 15 14 13 17 17 H 1.08002 * 119.99669 * 215.59416 * 16 15 14 18 18 C 1.37880 * 120.00111 * 35.31389 * 16 15 14 19 19 N 1.31508 * 119.99675 * 355.74723 * 18 16 15 20 20 Si 1.86799 * 120.00081 * 175.74132 * 18 16 15 21 21 H 1.48500 * 109.47027 * 90.00026 * 20 18 16 22 22 H 1.48493 * 109.47258 * 210.00150 * 20 18 16 23 23 H 1.48505 * 109.47124 * 330.00543 * 20 18 16 24 24 C 1.53005 * 117.50112 * 199.91057 * 15 14 13 25 25 C 1.53002 * 117.50044 * 268.57139 * 15 14 13 26 26 C 1.39592 * 120.09259 * 0.26345 * 10 9 8 27 27 C 1.38194 * 119.59047 * 359.46108 * 26 10 9 28 28 H 1.08996 * 109.47167 * 179.97438 * 1 2 3 29 29 H 1.09010 * 109.47196 * 299.99908 * 1 2 3 30 30 H 1.09002 * 109.47453 * 59.99285 * 1 2 3 31 31 H 1.08998 * 109.47265 * 240.00559 * 2 1 3 32 32 H 1.09000 * 109.47357 * 119.99945 * 2 1 3 33 33 H 0.96696 * 114.00588 * 90.00297 * 5 4 3 34 34 H 1.07993 * 119.95307 * 359.96004 * 8 7 6 35 35 H 1.08000 * 119.75871 * 179.97438 * 9 8 7 36 36 H 1.09003 * 109.47103 * 64.93830 * 14 13 11 37 37 H 1.09003 * 109.47114 * 304.93840 * 14 13 11 38 38 H 0.97007 * 119.99867 * 184.99700 * 19 18 16 39 39 H 1.09001 * 117.49913 * 215.00311 * 24 15 14 40 40 H 1.08997 * 117.49336 * 0.02562 * 24 15 14 41 41 H 1.08994 * 117.49548 * 359.97438 * 25 15 14 42 42 H 1.09003 * 117.49557 * 144.97452 * 25 15 14 43 43 H 1.08005 * 120.20460 * 179.70526 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2882 2.1434 -1.0967 5 8 2.1442 1.7372 -2.3780 6 7 2.7072 3.3273 -0.7264 7 6 2.7336 3.4005 0.6267 8 6 3.0914 4.4124 1.5262 9 6 3.0136 4.1923 2.8679 10 6 2.5765 2.9548 3.3615 11 6 2.4973 2.7292 4.8157 12 8 2.2072 1.6299 5.2450 13 8 2.7466 3.7418 5.6693 14 6 2.7609 3.4218 7.0855 15 6 2.9355 4.7070 7.8970 16 6 1.9377 5.7989 7.6079 17 1 2.2463 6.8335 7.6358 18 6 0.6324 5.4767 7.3021 19 7 0.2775 4.2163 7.1805 20 14 -0.6318 6.8306 7.0608 21 1 -0.6581 7.2342 5.6320 22 1 -1.9727 6.3325 7.4593 23 1 -0.2693 8.0015 7.8993 24 6 3.4368 4.5712 9.3362 25 6 4.3623 5.1298 8.2524 26 6 2.2221 1.9343 2.4775 27 6 2.2943 2.1558 1.1153 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.2697 1.9139 -2.7509 34 1 3.4298 5.3686 1.1554 35 1 3.2913 4.9763 3.5568 36 1 3.5878 2.7437 7.2965 37 1 1.8202 2.9441 7.3595 38 1 -0.6217 3.9911 6.8947 39 1 3.0451 5.2716 10.0738 40 1 3.6426 3.5662 9.7046 41 1 5.1765 4.4921 7.9084 42 1 4.5794 6.1977 8.2767 43 1 1.8897 0.9788 2.8558 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847651985.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:31:28 Heat of formation + Delta-G solvation = -13.816190 kcal Electronic energy + Delta-G solvation = -27901.266602 eV Core-core repulsion = 23914.262621 eV Total energy + Delta-G solvation = -3987.003981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.35984 -39.52254 -38.22474 -36.88746 -36.34092 -35.22215 -34.87963 -32.16651 -31.43006 -29.70295 -29.40260 -26.49010 -25.39039 -24.24734 -23.66979 -22.68019 -21.27019 -20.80519 -20.49194 -19.14828 -18.59644 -17.79975 -17.39154 -16.69074 -16.37076 -15.81513 -15.37612 -15.18210 -14.85385 -14.56947 -14.52768 -14.20622 -13.90190 -13.81593 -13.28597 -13.22636 -12.99425 -12.71243 -12.16890 -12.05270 -11.92151 -11.74219 -11.59409 -11.30495 -11.24999 -10.99988 -10.77014 -10.59383 -10.49231 -10.32780 -10.09663 -9.96608 -9.56468 -9.28681 -8.96916 -8.75294 -8.41960 -8.24390 -8.14941 -5.97202 -4.10768 0.53043 1.44051 1.94552 2.28350 3.21630 3.28306 3.35739 3.38281 3.39532 3.55526 4.04372 4.25464 4.30870 4.37169 4.56909 4.80870 4.86403 4.96179 5.07838 5.12196 5.26047 5.30900 5.31681 5.48537 5.54689 5.65729 5.76535 6.03782 6.08496 6.15635 6.22742 6.35784 6.41126 6.49353 6.51647 6.64796 6.67523 6.77558 6.82753 6.98900 7.24113 7.24620 7.48071 7.59545 7.61780 7.93067 8.33623 8.69383 8.87768 9.51517 10.97203 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015732 B = 0.003170 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.424177 B = 8830.521119 C = 9111.360114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.488 5.488 4 C 0.452 3.548 5 O -0.443 6.443 6 N -0.490 5.490 7 C 0.082 3.918 8 C -0.080 4.080 9 C -0.067 4.067 10 C -0.089 4.089 11 C 0.505 3.495 12 O -0.523 6.523 13 O -0.312 6.312 14 C 0.119 3.881 15 C 0.046 3.954 16 C -0.480 4.480 17 H 0.062 0.938 18 C 0.074 3.926 19 N -0.883 5.883 20 Si 0.896 3.104 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.196 4.196 25 C -0.209 4.209 26 C -0.043 4.043 27 C 0.039 3.961 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.408 0.592 34 H 0.138 0.862 35 H 0.153 0.847 36 H 0.020 0.980 37 H 0.120 0.880 38 H 0.262 0.738 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.188 -7.689 -15.794 17.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 N -0.191 5.191 4 C 0.149 3.851 5 O -0.244 6.244 6 N -0.221 5.221 7 C -0.037 4.037 8 C -0.100 4.100 9 C -0.087 4.087 10 C -0.092 4.092 11 C 0.349 3.651 12 O -0.415 6.415 13 O -0.226 6.226 14 C 0.046 3.954 15 C 0.046 3.954 16 C -0.517 4.517 17 H 0.080 0.920 18 C -0.129 4.129 19 N -0.520 5.520 20 Si 0.724 3.276 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.234 4.234 25 C -0.246 4.246 26 C -0.064 4.064 27 C -0.068 4.068 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.266 0.734 34 H 0.156 0.844 35 H 0.171 0.829 36 H 0.038 0.962 37 H 0.138 0.862 38 H 0.072 0.928 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.646 -7.796 -16.205 18.057 hybrid contribution -1.485 -0.146 0.196 1.505 sum 0.161 -7.941 -16.009 17.871 Atomic orbital electron populations 1.22179 0.94007 1.03460 1.03236 1.21856 0.95641 0.79393 1.05070 1.45743 1.54825 1.13507 1.04976 1.20362 0.97942 0.85608 0.81148 1.84761 1.39212 1.81774 1.18655 1.70612 1.23824 1.15838 1.11800 1.18974 1.02068 0.93596 0.89059 1.19961 1.01036 0.97979 0.91004 1.21089 0.96170 0.96425 0.95016 1.19022 1.04610 0.94960 0.90590 1.20682 0.74121 0.83075 0.87211 1.90750 1.45254 1.25965 1.79534 1.86494 1.79276 1.36816 1.19978 1.22883 1.01929 0.96308 0.74258 1.18928 0.90993 0.94420 0.91109 1.20450 0.92383 0.91473 1.47439 0.91955 1.24945 0.98224 0.95490 0.94201 1.69760 1.19623 1.16164 1.46476 0.86515 0.80639 0.81914 0.78567 1.20455 1.21201 1.19791 1.22991 1.06260 0.99812 0.94360 1.22953 0.95284 0.99706 1.06646 1.19898 0.98879 0.99691 0.87945 1.18356 1.07282 0.92617 0.88521 0.90169 0.91331 0.92239 0.88515 0.88642 0.73416 0.84409 0.82932 0.96159 0.86237 0.92765 0.89824 0.91450 0.91249 0.90311 0.84521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 10.24 37.16 0.38 -0.74 16 2 C 0.10 0.78 6.81 -4.04 -0.03 0.76 16 3 N -0.49 -5.60 2.83 -116.01 -0.33 -5.92 16 4 C 0.45 5.41 8.98 -88.90 -0.80 4.61 16 5 O -0.44 -3.72 13.51 -17.27 -0.23 -3.95 16 6 N -0.49 -7.25 11.29 -12.18 -0.14 -7.39 16 7 C 0.08 1.26 7.22 -84.61 -0.61 0.65 16 8 C -0.08 -1.17 10.03 -39.65 -0.40 -1.57 16 9 C -0.07 -1.07 9.53 -39.58 -0.38 -1.44 16 10 C -0.09 -1.58 5.88 -104.93 -0.62 -2.20 16 11 C 0.50 10.89 7.87 34.45 0.27 11.16 16 12 O -0.52 -12.18 16.04 -19.28 -0.31 -12.49 16 13 O -0.31 -7.34 8.96 -40.68 -0.36 -7.71 16 14 C 0.12 2.91 4.45 37.15 0.17 3.08 16 15 C 0.05 1.12 2.21 -155.66 -0.34 0.78 16 16 C -0.48 -12.75 8.79 -34.44 -0.30 -13.05 16 17 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 18 C 0.07 1.96 5.35 -17.82 -0.10 1.87 16 19 N -0.88 -24.16 10.16 55.43 0.56 -23.60 16 20 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 C -0.20 -4.28 9.96 -26.69 -0.27 -4.55 16 25 C -0.21 -4.43 9.92 -26.69 -0.26 -4.69 16 26 C -0.04 -0.67 9.58 -39.09 -0.37 -1.05 16 27 C 0.04 0.56 6.87 -83.89 -0.58 -0.02 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 0.56 8.12 -51.93 -0.42 0.14 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.41 1.25 9.06 45.56 0.41 1.67 16 34 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 35 H 0.15 2.42 7.59 -52.49 -0.40 2.03 16 36 H 0.02 0.46 8.09 -51.93 -0.42 0.04 16 37 H 0.12 3.24 5.76 -51.93 -0.30 2.94 16 38 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 39 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 43 H 0.14 2.01 7.65 -52.48 -0.40 1.61 16 LS Contribution 372.92 15.07 5.62 5.62 Total: -1.00 -32.51 372.92 -9.32 -41.83 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -4.88 Total: 4.27 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -4.23 Total: -6.41 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.10 Total: -36.91 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.91 Total: -24.15 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.51 -9.32 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847651985.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.015 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds