Wall clock time and date at job start Sat Apr 11 2020 02:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47049 * 2 1 4 4 N 1.39933 * 125.74202 * 269.97269 * 3 2 1 5 5 C 1.30436 * 108.91819 * 180.02562 * 4 3 2 6 6 C 1.41339 * 108.01310 * 359.97438 * 5 4 3 7 7 C 1.47286 * 126.42832 * 180.26135 * 6 5 4 8 8 O 1.21524 * 120.00284 * 179.68929 * 7 6 5 9 9 O 1.34756 * 119.99745 * 359.69064 * 7 6 5 10 10 C 1.45200 * 117.00162 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47597 * 179.97438 * 10 9 7 12 12 C 1.38298 * 119.93054 * 269.73621 * 11 10 9 13 13 C 1.38102 * 120.06623 * 179.72555 * 12 11 10 14 14 C 1.38878 * 119.92913 * 0.56063 * 13 12 11 15 15 O 1.35750 * 120.07066 * 179.68892 * 14 13 12 16 16 C 1.34833 * 117.00197 * 174.48832 * 15 14 13 17 17 H 1.07997 * 120.00269 * 5.05451 * 16 15 14 18 18 C 1.38656 * 119.99936 * 185.05584 * 16 15 14 19 19 N 1.31561 * 119.99744 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99971 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47144 * 89.99861 * 20 18 16 22 22 H 1.48499 * 109.47066 * 209.99500 * 20 18 16 23 23 H 1.48494 * 109.47336 * 330.00040 * 20 18 16 24 24 C 1.38880 * 119.86287 * 359.70643 * 14 13 12 25 25 C 1.38099 * 119.93001 * 0.02562 * 24 14 13 26 26 C 1.34224 * 125.74542 * 90.00223 * 3 2 1 27 27 C 1.50704 * 126.29750 * 359.93799 * 26 3 2 28 28 H 1.08996 * 109.47629 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47311 * 300.00072 * 1 2 3 30 30 H 1.09006 * 109.47158 * 60.00092 * 1 2 3 31 31 H 1.08993 * 109.47527 * 239.99817 * 2 1 3 32 32 H 1.09001 * 109.46720 * 119.99757 * 2 1 3 33 33 H 1.07995 * 125.99484 * 180.02562 * 5 4 3 34 34 H 1.09007 * 109.47518 * 300.00316 * 10 9 7 35 35 H 1.09007 * 109.46831 * 59.99742 * 10 9 7 36 36 H 1.07993 * 119.96671 * 359.96801 * 12 11 10 37 37 H 1.07998 * 120.04048 * 180.27183 * 13 12 11 38 38 H 0.97004 * 119.99253 * 180.02562 * 19 18 16 39 39 H 1.08003 * 120.03581 * 179.97438 * 24 14 13 40 40 H 1.08004 * 119.96138 * 179.97438 * 25 24 14 41 41 H 1.09003 * 109.47189 * 270.02473 * 27 26 3 42 42 H 1.09003 * 109.46668 * 30.01875 * 27 26 3 43 43 H 1.08997 * 109.47347 * 150.02286 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2912 2.1517 -1.1358 5 6 2.7078 3.3287 -0.7583 6 6 2.7167 3.3566 0.6548 7 6 3.1126 4.4926 1.5047 8 8 3.0700 4.3900 2.7148 9 8 3.5220 5.6457 0.9402 10 6 3.8964 6.7230 1.8388 11 6 4.3243 7.9230 1.0338 12 6 5.6515 8.0767 0.6768 13 6 6.0458 9.1723 -0.0658 14 6 5.1100 10.1262 -0.4439 15 8 5.4955 11.2076 -1.1684 16 6 4.5217 12.0345 -1.5994 17 1 3.4985 11.8680 -1.2964 18 6 4.8338 13.0987 -2.4317 19 7 6.0803 13.3018 -2.8003 20 14 3.4846 14.2439 -3.0294 21 1 3.3249 15.3648 -2.0684 22 1 3.8489 14.7841 -4.3637 23 1 2.2073 13.4934 -3.1310 24 6 3.7789 9.9718 -0.0790 25 6 3.3900 8.8711 0.6588 26 6 2.2797 2.1205 1.0894 27 6 2.1236 1.6828 2.5230 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 2.9946 4.1399 -1.4109 34 1 3.0430 6.9891 2.4626 35 1 4.7218 6.3976 2.4721 36 1 6.3797 7.3372 0.9755 37 1 7.0816 9.2897 -0.3481 38 1 6.2986 14.0465 -3.3823 39 1 3.0489 10.7121 -0.3712 40 1 2.3550 8.7507 0.9432 41 1 1.1172 1.9203 2.8679 42 1 2.2879 0.6076 2.5945 43 1 2.8527 2.2039 3.1434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869846341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:31:59 Heat of formation + Delta-G solvation = -16.843274 kcal Electronic energy + Delta-G solvation = -26416.309162 eV Core-core repulsion = 22429.173917 eV Total energy + Delta-G solvation = -3987.135245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.77197 -39.87591 -38.98899 -36.89243 -35.86247 -35.06553 -32.51919 -32.40921 -30.75347 -30.22202 -29.92219 -27.82015 -26.04179 -25.00174 -24.27400 -22.88434 -22.01754 -20.95952 -20.50210 -19.69799 -18.05080 -17.89546 -17.10501 -16.53514 -16.37508 -16.04817 -15.57799 -15.07966 -14.61559 -14.54747 -14.37411 -14.16646 -13.69051 -13.60953 -13.52638 -13.47874 -13.06664 -12.81669 -12.78272 -12.71571 -12.60299 -12.41162 -12.19936 -11.84769 -11.70183 -11.35578 -11.13050 -10.95771 -10.77173 -10.64885 -10.46836 -10.34125 -10.26069 -9.72414 -9.37783 -8.94383 -8.88060 -8.22561 -7.29443 -6.49703 -4.08221 1.13919 1.86893 1.92487 2.10068 2.19612 3.07288 3.12050 3.16665 3.17092 3.19575 3.93579 4.05142 4.16879 4.41143 4.51778 4.53987 4.68484 4.71774 4.96590 5.02080 5.06270 5.13351 5.20148 5.21229 5.27845 5.31788 5.35052 5.47623 5.55648 5.62965 5.70022 5.81024 5.82355 6.17040 6.21297 6.37657 6.49067 6.63377 6.67185 6.85148 7.00823 7.19247 7.28800 7.31519 7.39153 7.75813 7.95295 7.98833 8.95689 9.64099 10.67827 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.020199 B = 0.002053 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.883598 B =13636.662063 C =14301.665420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 N -0.359 5.359 4 N -0.301 5.301 5 C 0.108 3.892 6 C -0.284 4.284 7 C 0.542 3.458 8 O -0.528 6.528 9 O -0.346 6.346 10 C 0.132 3.868 11 C -0.202 4.202 12 C -0.048 4.048 13 C -0.196 4.196 14 C 0.163 3.837 15 O -0.173 6.173 16 C -0.393 4.393 17 H 0.094 0.906 18 C 0.040 3.960 19 N -0.859 5.859 20 Si 0.942 3.058 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.238 4.238 25 C -0.045 4.045 26 C 0.162 3.838 27 C -0.101 4.101 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.200 0.800 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.271 0.729 39 H 0.129 0.871 40 H 0.109 0.891 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.531 -24.791 7.917 27.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 N -0.139 5.139 4 N -0.119 5.119 5 C -0.080 4.080 6 C -0.296 4.296 7 C 0.388 3.612 8 O -0.420 6.420 9 O -0.262 6.262 10 C 0.060 3.940 11 C -0.203 4.203 12 C -0.067 4.067 13 C -0.215 4.215 14 C 0.108 3.892 15 O -0.075 6.075 16 C -0.469 4.469 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.767 3.233 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.257 4.257 25 C -0.063 4.063 26 C 0.030 3.970 27 C -0.159 4.159 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.217 0.783 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.081 0.919 39 H 0.147 0.853 40 H 0.127 0.873 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.488 -25.421 7.010 28.025 hybrid contribution -0.529 1.193 0.359 1.354 sum -10.018 -24.227 7.369 27.233 Atomic orbital electron populations 1.22194 0.93775 1.03405 1.03575 1.21805 0.95633 0.77355 1.04918 1.48610 1.49540 1.12363 1.03384 1.77270 1.22931 1.04610 1.07076 1.24275 0.94668 0.95203 0.93835 1.19146 1.22435 0.94508 0.93559 1.19915 0.73394 0.81974 0.85904 1.90763 1.52679 1.83189 1.15332 1.86689 1.75876 1.21809 1.41844 1.21674 0.99643 0.82730 0.89978 1.18875 0.94237 0.96908 1.10317 1.20514 0.94705 0.96020 0.95436 1.20196 0.99198 0.95711 1.06420 1.19440 0.92291 0.87254 0.90211 1.83978 1.35525 1.29178 1.58855 1.21365 0.88897 1.07139 1.29466 0.88886 1.25324 0.97728 0.97516 0.95948 1.70044 1.17353 1.29290 1.32682 0.85689 0.79578 0.79652 0.78402 1.19826 1.20202 1.19112 1.21141 0.96627 1.01270 1.06674 1.20624 0.97681 0.93033 0.94967 1.21482 0.93809 0.90441 0.91299 1.20732 1.05173 1.01765 0.88271 0.90136 0.91835 0.91307 0.88110 0.88552 0.78344 0.91272 0.91230 0.86870 0.86245 0.91909 0.85310 0.87316 0.89314 0.90914 0.87513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.76 10.24 37.16 0.38 -0.38 16 2 C 0.12 0.65 6.93 -4.05 -0.03 0.62 16 3 N -0.36 -3.44 3.58 -56.59 -0.20 -3.64 16 4 N -0.30 -3.61 12.50 30.87 0.39 -3.23 16 5 C 0.11 1.32 11.87 -16.97 -0.20 1.12 16 6 C -0.28 -3.61 6.13 -105.08 -0.64 -4.25 16 7 C 0.54 7.88 7.95 34.41 0.27 8.15 16 8 O -0.53 -8.19 14.64 -19.28 -0.28 -8.47 16 9 O -0.35 -5.35 10.05 -40.64 -0.41 -5.76 16 10 C 0.13 2.01 5.60 36.00 0.20 2.21 16 11 C -0.20 -3.54 5.52 -104.58 -0.58 -4.12 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 13 C -0.20 -4.10 9.99 -39.39 -0.39 -4.50 16 14 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 15 O -0.17 -4.87 9.76 0.04 0.00 -4.87 16 16 C -0.39 -10.83 9.49 30.89 0.29 -10.54 16 17 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 18 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 19 N -0.86 -24.92 13.67 55.48 0.76 -24.16 16 20 Si 0.94 20.29 29.55 -169.99 -5.02 15.27 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 C -0.24 -5.12 9.17 -39.39 -0.36 -5.48 16 25 C -0.04 -0.82 9.69 -39.61 -0.38 -1.21 16 26 C 0.16 1.67 7.01 -81.58 -0.57 1.10 16 27 C -0.10 -0.74 9.56 36.01 0.34 -0.40 16 28 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 0.27 7.02 -51.93 -0.36 -0.09 16 33 H 0.20 2.13 8.06 -52.49 -0.42 1.71 16 34 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 35 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 36 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 38 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.13 2.76 5.64 -52.48 -0.30 2.46 16 40 H 0.11 1.73 8.06 -52.48 -0.42 1.30 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.32 7.05 -51.93 -0.37 -0.05 16 43 H 0.11 0.96 6.52 -51.93 -0.34 0.62 16 LS Contribution 374.88 15.07 5.65 5.65 Total: -1.00 -33.33 374.88 -6.95 -40.28 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.42 Total: 3.26 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -2.41 Total: -14.32 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 0.94 Total: -31.03 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.69 Total: -19.10 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.33 -6.95 -40.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869846341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.432 kcal (2) G-P(sol) polarization free energy of solvation -33.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds