Wall clock time and date at job start Sat Apr 11 2020 02:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35833 * 116.99897 * 2 1 4 4 C 1.38898 * 119.91096 * 180.02562 * 3 2 1 5 5 C 1.37814 * 120.08841 * 180.02562 * 4 3 2 6 6 C 1.39625 * 119.91082 * 0.02562 * 5 4 3 7 7 C 1.47772 * 120.08779 * 180.02562 * 6 5 4 8 8 C 1.36776 * 126.82422 * 179.71008 * 7 6 5 9 9 C 1.41874 * 103.81846 * 180.26503 * 8 7 6 10 10 C 1.48341 * 126.83831 * 179.97438 * 9 8 7 11 11 O 1.21488 * 120.00403 * 353.38913 * 10 9 8 12 12 N 1.34779 * 119.99723 * 173.38446 * 10 9 8 13 13 C 1.46501 * 120.00058 * 3.64510 * 12 10 9 14 14 C 1.46501 * 119.99846 * 183.63817 * 12 10 9 15 15 H 1.09000 * 109.47403 * 0.02562 * 14 12 10 16 16 C 1.52998 * 109.47161 * 240.00331 * 14 12 10 17 17 C 1.50703 * 109.46895 * 120.00635 * 14 12 10 18 18 H 1.07999 * 119.99998 * 359.97438 * 17 14 12 19 19 C 1.37877 * 119.99845 * 180.02562 * 17 14 12 20 20 N 1.31509 * 120.00378 * 359.97438 * 19 17 14 21 21 Si 1.86806 * 119.99648 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47052 * 90.00081 * 21 19 17 23 23 H 1.48503 * 109.46847 * 209.99792 * 21 19 17 24 24 H 1.48499 * 109.47403 * 329.99636 * 21 19 17 25 25 N 1.31109 * 106.31778 * 359.97438 * 9 8 7 26 26 O 1.20873 * 111.77608 * 359.97438 * 25 9 8 27 27 C 1.39635 * 119.82612 * 0.27534 * 6 5 4 28 28 C 1.37816 * 119.90971 * 359.42250 * 27 6 5 29 29 H 1.09002 * 109.46898 * 299.99335 * 1 2 3 30 30 H 1.08997 * 109.47858 * 59.99216 * 1 2 3 31 31 H 1.09000 * 109.47632 * 179.97438 * 1 2 3 32 32 H 1.07999 * 119.95762 * 359.97438 * 4 3 2 33 33 H 1.08005 * 120.04373 * 180.02562 * 5 4 3 34 34 H 1.08002 * 128.09345 * 0.22593 * 8 7 6 35 35 H 1.08998 * 109.46995 * 84.06970 * 13 12 10 36 36 H 1.09001 * 109.46814 * 204.06952 * 13 12 10 37 37 H 1.09000 * 109.47066 * 324.07087 * 13 12 10 38 38 H 1.09009 * 109.47119 * 299.99939 * 16 14 12 39 39 H 1.08994 * 109.47195 * 60.00544 * 16 14 12 40 40 H 1.09004 * 109.47131 * 180.02562 * 16 14 12 41 41 H 0.97001 * 120.00075 * 180.02562 * 20 19 17 42 42 H 1.08001 * 120.04528 * 179.72668 * 27 6 5 43 43 H 1.07991 * 119.95451 * 180.27341 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0456 1.2103 0.0000 4 6 3.4328 1.2809 -0.0005 5 6 4.0622 2.5069 0.0000 6 6 3.3035 3.6790 0.0016 7 6 3.9744 4.9957 0.0016 8 6 3.3710 6.2232 -0.0025 9 6 4.4579 7.1350 -0.0068 10 6 4.3763 8.6161 -0.0127 11 8 3.2992 9.1647 -0.1355 12 7 5.4970 9.3533 0.1181 13 6 6.8036 8.6942 0.1860 14 6 5.4085 10.8138 0.1923 15 1 4.3640 11.1184 0.1261 16 6 6.1949 11.4319 -0.9654 17 6 5.9870 11.2861 1.5013 18 1 6.3808 10.5701 2.2074 19 6 6.0127 12.6324 1.7978 20 7 5.5328 13.5044 0.9382 21 14 6.7292 13.2178 3.4206 22 1 8.1813 13.4802 3.2546 23 1 6.0454 14.4671 3.8416 24 1 6.5302 12.1718 4.4557 25 7 5.5489 6.4078 -0.0044 26 8 5.2994 5.2251 0.0011 27 6 1.9092 3.6038 0.0085 28 6 1.2873 2.3740 0.0017 29 1 -0.3633 0.5137 0.8901 30 1 -0.3635 0.5139 -0.8898 31 1 -0.3634 -1.0276 -0.0005 32 1 4.0189 0.3738 -0.0005 33 1 5.1409 2.5609 -0.0008 34 1 2.3143 6.4462 -0.0030 35 1 7.1618 8.4929 -0.8236 36 1 7.5119 9.3439 0.7001 37 1 6.7091 7.7555 0.7319 38 1 7.2394 11.1272 -0.8987 39 1 5.7765 11.0903 -1.9121 40 1 6.1294 12.5185 -0.9099 41 1 5.5512 14.4515 1.1467 42 1 1.3189 4.5082 0.0142 43 1 0.2090 2.3150 0.0025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879103839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:32:16 Heat of formation + Delta-G solvation = 30.039454 kcal Electronic energy + Delta-G solvation = -27004.207980 eV Core-core repulsion = 23019.105722 eV Total energy + Delta-G solvation = -3985.102258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.88814 -40.50515 -39.01561 -37.96761 -35.45742 -33.98537 -33.16504 -32.46234 -31.54535 -29.67095 -29.19921 -27.66336 -26.20012 -25.26514 -24.59478 -23.74925 -22.69771 -22.05846 -20.65946 -19.00427 -18.50944 -17.69342 -17.46512 -16.75966 -16.48427 -16.30834 -16.18865 -15.37816 -15.23978 -14.62776 -14.43221 -14.38412 -14.24654 -13.78984 -13.60320 -13.25552 -13.03165 -12.59143 -12.51360 -12.41511 -12.36434 -11.92820 -11.78878 -11.61538 -11.23384 -11.13515 -10.87631 -10.83667 -10.68388 -10.33003 -10.21839 -10.19090 -9.97106 -9.46497 -9.40355 -9.18551 -8.46169 -8.20466 -7.67681 -6.09884 -4.18141 0.42248 0.93673 1.52894 2.02760 2.78351 2.86649 3.25993 3.32699 3.35681 3.41634 3.59281 3.74985 4.19539 4.32691 4.36830 4.43561 4.52269 4.67509 4.69747 4.83414 4.97757 5.02609 5.08031 5.15861 5.21064 5.28598 5.38038 5.58696 5.76600 5.86872 5.96307 6.02399 6.09110 6.14948 6.23713 6.50825 6.74107 6.82216 6.90295 7.02613 7.34248 7.46176 7.67852 7.95938 8.12166 8.14891 8.41862 8.73542 8.91628 9.47998 10.95533 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.027577 B = 0.002161 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.107894 B =12951.600591 C =13062.074105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.138 3.862 4 C -0.150 4.150 5 C -0.054 4.054 6 C -0.054 4.054 7 C 0.005 3.995 8 C -0.171 4.171 9 C -0.005 4.005 10 C 0.578 3.422 11 O -0.537 6.537 12 N -0.571 5.571 13 C 0.078 3.922 14 C 0.257 3.743 15 H 0.066 0.934 16 C -0.146 4.146 17 C -0.528 4.528 18 H 0.061 0.939 19 C 0.065 3.935 20 N -0.886 5.886 21 Si 0.901 3.099 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.274 1.274 25 N -0.325 5.325 26 O 0.114 5.886 27 C -0.048 4.048 28 C -0.206 4.206 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.180 0.820 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.031 0.969 39 H 0.012 0.988 40 H 0.096 0.904 41 H 0.264 0.736 42 H 0.136 0.864 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.796 -26.146 -2.888 27.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.092 3.908 4 C -0.168 4.168 5 C -0.072 4.072 6 C -0.056 4.056 7 C -0.058 4.058 8 C -0.193 4.193 9 C -0.163 4.163 10 C 0.362 3.638 11 O -0.415 6.415 12 N -0.301 5.301 13 C -0.066 4.066 14 C 0.157 3.843 15 H 0.083 0.917 16 C -0.204 4.204 17 C -0.566 4.566 18 H 0.079 0.921 19 C -0.138 4.138 20 N -0.524 5.524 21 Si 0.728 3.272 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.199 1.199 25 N -0.029 5.029 26 O 0.041 5.959 27 C -0.067 4.067 28 C -0.225 4.225 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.197 0.803 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.031 0.969 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.153 0.847 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.994 -25.421 -2.976 26.287 hybrid contribution -0.570 0.550 0.877 1.182 sum -6.565 -24.871 -2.098 25.808 Atomic orbital electron populations 1.23117 0.78021 1.04207 1.01675 1.86067 1.21715 1.26856 1.88215 1.19230 0.92433 0.84239 0.94900 1.20357 0.91274 0.98643 1.06573 1.21119 1.00478 0.90315 0.95287 1.17480 0.92422 0.88002 1.07682 1.22298 0.83483 0.94912 1.05118 1.22563 1.01518 0.89208 1.05968 1.23776 0.89272 0.97789 1.05500 1.16989 0.85231 0.82637 0.78923 1.90741 1.27995 1.71066 1.51653 1.48226 1.05022 1.09618 1.67239 1.21911 0.85778 0.97960 1.00945 1.19083 0.99020 0.71410 0.94740 0.91663 1.22085 0.98150 1.04739 0.95471 1.21296 1.41053 0.92278 1.01992 0.92126 1.24894 0.95143 0.96487 0.97229 1.69877 1.45326 1.02126 1.35115 0.86454 0.79013 0.78264 0.83439 1.20537 1.21040 1.19908 1.74374 1.22956 0.88683 1.16873 1.84865 1.23627 1.20811 1.66555 1.20943 0.92494 0.97951 0.95273 1.21143 1.00411 0.91716 1.09198 0.92347 0.92358 0.88066 0.84460 0.84108 0.80312 0.93671 0.89928 0.90896 0.94986 0.96875 0.88598 0.92596 0.84659 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.32 -2.45 10.49 -19.22 -0.20 -2.65 16 3 C 0.14 1.15 6.69 -39.09 -0.26 0.89 16 4 C -0.15 -1.21 9.97 -39.49 -0.39 -1.61 16 5 C -0.05 -0.47 9.72 -39.22 -0.38 -0.85 16 6 C -0.05 -0.55 5.87 -104.96 -0.62 -1.17 16 7 C 0.00 0.06 7.15 -36.21 -0.26 -0.20 16 8 C -0.17 -2.51 10.34 -38.72 -0.40 -2.91 16 9 C -0.01 -0.09 6.85 -82.63 -0.57 -0.66 16 10 C 0.58 13.04 7.70 -12.10 -0.09 12.95 16 11 O -0.54 -13.60 16.29 5.38 0.09 -13.51 16 12 N -0.57 -13.16 2.75 -176.19 -0.48 -13.64 16 13 C 0.08 1.51 8.59 59.85 0.51 2.02 16 14 C 0.26 6.75 2.63 -69.08 -0.18 6.57 16 15 H 0.07 1.95 6.90 -51.93 -0.36 1.59 16 16 C -0.15 -3.59 8.97 37.16 0.33 -3.25 16 17 C -0.53 -14.49 7.95 -34.44 -0.27 -14.77 16 18 H 0.06 1.65 7.44 -52.49 -0.39 1.26 16 19 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 20 N -0.89 -25.14 11.32 55.43 0.63 -24.51 16 21 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 N -0.33 -5.42 8.68 33.35 0.29 -5.13 16 26 O 0.11 1.60 11.01 16.03 0.18 1.78 16 27 C -0.05 -0.42 9.57 -39.21 -0.38 -0.80 16 28 C -0.21 -1.57 9.02 -39.49 -0.36 -1.93 16 29 H 0.06 0.20 7.65 -51.93 -0.40 -0.20 16 30 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 31 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.14 1.02 7.95 -52.48 -0.42 0.60 16 34 H 0.18 2.28 7.46 -52.49 -0.39 1.89 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.63 7.12 -51.93 -0.37 1.26 16 37 H 0.07 1.33 5.38 -51.93 -0.28 1.05 16 38 H 0.03 0.73 7.67 -51.92 -0.40 0.33 16 39 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.10 2.54 6.07 -51.93 -0.32 2.23 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.14 1.01 7.14 -52.49 -0.37 0.64 16 43 H 0.14 0.72 6.28 -52.49 -0.33 0.39 16 LS Contribution 363.03 15.07 5.47 5.47 Total: -1.00 -32.44 363.03 -6.72 -39.16 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.24 Total: -0.22 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -2.42 Total: -2.92 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.43 Total: -43.28 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.06 Total: -14.38 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.44 -6.72 -39.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879103839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.195 kcal (2) G-P(sol) polarization free energy of solvation -32.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds