Wall clock time and date at job start Sat Apr 11 2020 02:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47063 * 2 1 4 4 O 1.42898 * 109.46862 * 119.99321 * 2 1 3 5 5 C 1.35808 * 116.99872 * 84.86988 * 4 2 1 6 6 C 1.38625 * 120.12123 * 354.57831 * 5 4 2 7 7 C 1.38150 * 120.06341 * 180.02562 * 6 5 4 8 8 C 1.38410 * 120.30419 * 0.02562 * 7 6 5 9 9 C 1.37980 * 120.25002 * 359.97327 * 8 7 6 10 10 C 1.39318 * 119.93013 * 0.02720 * 9 8 7 11 11 C 1.48323 * 120.15398 * 180.02562 * 10 9 8 12 12 C 1.42334 * 126.94117 * 359.97438 * 11 10 9 13 13 C 1.35201 * 103.93760 * 179.97438 * 12 11 10 14 14 C 1.50693 * 126.65491 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.47095 * 90.00385 * 14 13 12 16 16 C 1.34780 * 120.00262 * 179.97438 * 15 14 13 17 17 O 1.21687 * 119.99878 * 0.02562 * 16 15 14 18 18 C 1.46372 * 120.00097 * 180.02562 * 16 15 14 19 19 H 1.08000 * 119.99768 * 359.97438 * 18 16 15 20 20 C 1.40054 * 119.99830 * 180.02562 * 18 16 15 21 21 N 1.30670 * 120.00174 * 359.97438 * 20 18 16 22 22 Si 1.86796 * 119.99804 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47455 * 60.00020 * 22 20 18 24 24 H 1.48503 * 109.47231 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47258 * 299.99671 * 22 20 18 26 26 O 1.34075 * 106.69148 * 0.02562 * 13 12 11 27 27 N 1.20912 * 111.84861 * 359.74657 * 26 13 12 28 28 H 1.08998 * 109.47398 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47492 * 300.00661 * 1 2 3 30 30 H 1.08999 * 109.46920 * 59.99907 * 1 2 3 31 31 H 1.09000 * 109.47223 * 239.99798 * 2 1 3 32 32 H 1.09002 * 109.47080 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46889 * 299.99540 * 3 2 1 34 34 H 1.08993 * 109.47890 * 59.99636 * 3 2 1 35 35 H 1.08002 * 119.96540 * 0.04435 * 6 5 4 36 36 H 1.07998 * 119.84615 * 180.27062 * 7 6 5 37 37 H 1.08001 * 119.87554 * 180.02562 * 8 7 6 38 38 H 1.07991 * 120.03657 * 180.02562 * 9 8 7 39 39 H 1.07996 * 128.02605 * 359.96603 * 12 11 10 40 40 H 1.09006 * 109.47439 * 210.00363 * 14 13 12 41 41 H 1.09001 * 109.47159 * 330.00130 * 14 13 12 42 42 H 0.96994 * 120.00063 * 0.02562 * 15 14 13 43 43 H 0.96995 * 120.00084 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0062 -0.6735 1.1669 5 6 2.1097 -2.0259 1.0990 6 6 1.6561 -2.7030 -0.0224 7 6 1.7615 -4.0788 -0.0899 8 6 2.3188 -4.7889 0.9594 9 6 2.7743 -4.1279 2.0816 10 6 2.6730 -2.7407 2.1604 11 6 3.1617 -2.0251 3.3642 12 6 3.7564 -2.6037 4.5207 13 6 4.0216 -1.5428 5.3158 14 6 4.6592 -1.5787 6.6807 15 7 6.1135 -1.4677 6.5434 16 6 6.8967 -1.4769 7.6403 17 8 6.3958 -1.5778 8.7447 18 6 8.3497 -1.3654 7.5031 19 1 8.7942 -1.2763 6.5229 20 6 9.1635 -1.3755 8.6429 21 7 8.6256 -1.4839 9.8288 22 14 11.0178 -1.2340 8.4678 23 1 11.3554 0.0473 7.7973 24 1 11.6462 -1.2700 9.8128 25 1 11.5261 -2.3675 7.6541 26 8 3.6063 -0.4528 4.6548 27 7 3.1373 -0.7322 3.5760 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.2203 -2.1543 -0.8442 36 1 1.4110 -4.6023 -0.9671 37 1 2.3981 -5.8643 0.8991 38 1 3.2089 -4.6854 2.8981 39 1 3.9506 -3.6477 4.7173 40 1 4.2861 -0.7467 7.2781 41 1 4.4114 -2.5192 7.1729 42 1 6.5128 -1.3869 5.6632 43 1 9.1892 -1.4905 10.6182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901398564.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:32:27 Heat of formation + Delta-G solvation = -15.635055 kcal Electronic energy + Delta-G solvation = -27002.586100 eV Core-core repulsion = 23015.503247 eV Total energy + Delta-G solvation = -3987.082853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.88080 -41.31146 -39.44318 -38.72510 -35.94454 -35.41199 -34.55022 -34.10083 -32.62039 -31.60880 -30.57023 -29.03748 -28.21861 -26.86578 -25.24722 -24.27158 -23.49604 -21.91228 -21.66877 -21.34189 -19.67620 -18.96882 -18.58060 -18.10735 -17.42313 -17.07669 -16.64911 -16.45512 -16.19337 -15.96679 -15.77625 -15.53985 -15.17066 -14.80638 -14.42590 -14.40620 -14.32218 -13.84919 -13.78149 -13.31648 -13.28222 -13.23420 -13.09555 -12.86124 -12.71848 -12.62490 -12.61499 -12.36102 -12.10113 -12.04655 -11.82977 -11.73016 -11.57605 -10.91262 -10.70862 -9.87279 -9.74950 -9.59937 -9.07855 -8.29483 -6.86204 -0.15510 0.41044 0.44425 1.42282 1.45156 1.49040 1.57106 1.98371 2.21778 2.27053 2.46256 2.83324 3.02143 3.15709 3.29523 3.60242 3.74896 3.85202 3.88491 3.99838 4.04033 4.11347 4.16938 4.26951 4.37255 4.47644 4.51638 4.61752 4.63398 4.73841 4.75923 4.79861 4.84878 4.88961 5.02532 5.14646 5.20257 5.32031 5.32598 5.42247 5.51595 5.81564 5.84181 6.06010 6.22217 6.47160 6.86587 7.22965 7.44477 8.44491 8.65389 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.017575 B = 0.002346 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.785688 B =11934.341289 C =12438.698680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.065 3.935 3 C -0.146 4.146 4 O -0.315 6.315 5 C 0.137 3.863 6 C -0.218 4.218 7 C -0.062 4.062 8 C -0.158 4.158 9 C -0.059 4.059 10 C -0.093 4.093 11 C 0.058 3.942 12 C -0.199 4.199 13 C -0.035 4.035 14 C 0.217 3.783 15 N -0.752 5.752 16 C 0.543 3.457 17 O -0.626 6.626 18 C -0.571 4.571 19 H 0.086 0.914 20 C 0.030 3.970 21 N -0.818 5.818 22 Si 0.997 3.003 23 H -0.257 1.257 24 H -0.273 1.273 25 H -0.254 1.254 26 O 0.085 5.915 27 N -0.358 5.358 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.104 0.896 34 H 0.053 0.947 35 H 0.152 0.848 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.148 0.852 39 H 0.199 0.801 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.395 0.605 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.568 -4.355 -25.530 29.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.010 3.990 3 C -0.203 4.203 4 O -0.228 6.228 5 C 0.089 3.911 6 C -0.236 4.236 7 C -0.080 4.080 8 C -0.176 4.176 9 C -0.078 4.078 10 C -0.095 4.095 11 C -0.099 4.099 12 C -0.221 4.221 13 C -0.098 4.098 14 C 0.092 3.908 15 N -0.408 5.408 16 C 0.348 3.652 17 O -0.513 6.513 18 C -0.608 4.608 19 H 0.104 0.896 20 C -0.185 4.185 21 N -0.448 5.448 22 Si 0.817 3.183 23 H -0.181 1.181 24 H -0.198 1.198 25 H -0.178 1.178 26 O 0.018 5.982 27 N -0.063 5.063 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.072 0.928 35 H 0.170 0.830 36 H 0.179 0.821 37 H 0.176 0.824 38 H 0.165 0.835 39 H 0.216 0.784 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.228 0.772 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.337 -3.190 -25.063 29.556 hybrid contribution 0.895 -0.326 0.260 0.988 sum -14.442 -3.516 -24.803 28.916 Atomic orbital electron populations 1.22345 0.93907 1.03108 1.03690 1.22761 0.95285 0.94049 0.86916 1.21855 1.01455 0.93330 1.03638 1.86326 1.80450 1.16125 1.39941 1.19316 0.94234 0.83360 0.94178 1.21503 1.07310 0.96485 0.98298 1.21509 0.94666 0.92761 0.99113 1.21365 1.01200 1.01765 0.93286 1.21275 0.96577 0.90526 0.99462 1.17374 1.07427 0.93413 0.91249 1.22153 1.01582 0.89389 0.96753 1.22743 1.04640 1.02071 0.92645 1.24363 1.01654 0.86253 0.97550 1.19219 0.81672 1.02959 0.86933 1.45887 1.04181 1.81141 1.09598 1.18539 0.88132 0.76198 0.82325 1.90570 1.76415 1.56975 1.27326 1.21360 0.90058 1.54242 0.95094 0.89551 1.26940 1.06443 0.91279 0.93852 1.70157 1.39091 1.35970 0.99555 0.85077 0.74655 0.80192 0.78421 1.18096 1.19794 1.17764 1.84839 1.57355 1.33977 1.21996 1.74327 1.16280 1.17220 0.98454 0.91913 0.92918 0.88443 0.89490 0.92909 0.87753 0.92780 0.83024 0.82122 0.82376 0.83473 0.78386 0.91906 0.89172 0.77192 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 9.17 71.98 0.66 -1.74 16 2 C 0.07 1.14 2.85 30.59 0.09 1.23 16 3 C -0.15 -2.40 9.56 71.98 0.69 -1.71 16 4 O -0.32 -8.37 8.18 -91.40 -0.75 -9.11 16 5 C 0.14 3.34 6.60 22.74 0.15 3.49 16 6 C -0.22 -3.65 8.24 22.34 0.18 -3.47 16 7 C -0.06 -0.80 10.03 22.29 0.22 -0.57 16 8 C -0.16 -2.21 10.03 22.25 0.22 -1.99 16 9 C -0.06 -1.14 9.60 22.47 0.22 -0.92 16 10 C -0.09 -2.43 5.89 -19.95 -0.12 -2.55 16 11 C 0.06 1.81 7.03 42.97 0.30 2.11 16 12 C -0.20 -5.77 10.45 22.59 0.24 -5.53 16 13 C -0.04 -1.18 6.84 24.98 0.17 -1.01 16 14 C 0.22 8.38 6.23 85.63 0.53 8.91 16 15 N -0.75 -33.86 5.54 -471.15 -2.61 -36.47 16 16 C 0.54 31.15 7.75 86.36 0.67 31.82 16 17 O -0.63 -41.15 15.02 -4.31 -0.06 -41.21 16 18 C -0.57 -32.17 9.54 24.83 0.24 -31.93 16 19 H 0.09 4.38 7.85 -2.91 -0.02 4.36 16 20 C 0.03 1.68 5.50 85.31 0.47 2.15 16 21 N -0.82 -49.58 11.83 21.84 0.26 -49.33 16 22 Si 1.00 40.67 29.56 68.60 2.03 42.70 16 23 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 24 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 25 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 26 O 0.09 3.09 11.18 71.31 0.80 3.89 16 27 N -0.36 -12.79 10.67 -49.44 -0.53 -13.31 16 28 H 0.06 0.86 6.91 -2.39 -0.02 0.84 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 1.20 6.32 -2.39 -0.02 1.18 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 35 H 0.15 1.82 5.42 -2.91 -0.02 1.80 16 36 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 37 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 38 H 0.15 2.31 7.23 -2.92 -0.02 2.29 16 39 H 0.20 4.45 7.58 -2.91 -0.02 4.43 16 40 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 41 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 42 H 0.39 15.99 8.44 -92.71 -0.78 15.21 16 43 H 0.28 15.14 8.29 -92.71 -0.77 14.38 16 Total: -1.00 -79.92 369.74 4.34 -75.59 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 0.27 Total: 28.97 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 4.93 Total: -1.71 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -2.88 Total: -99.11 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -0.02 Total: -46.44 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -79.92 4.34 -75.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901398564.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.950 kcal (2) G-P(sol) polarization free energy of solvation -79.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds