Wall clock time and date at job start Sat Apr 11 2020 02:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47244 * 2 1 4 4 C 1.34779 * 120.00395 * 275.64092 * 3 2 1 5 5 O 1.21284 * 119.99494 * 4.93827 * 4 3 2 6 6 C 1.50694 * 120.00253 * 184.93042 * 4 3 2 7 7 H 1.09003 * 109.54925 * 328.13245 * 6 4 3 8 8 C 1.53034 * 109.55353 * 207.93974 * 6 4 3 9 9 C 1.52588 * 109.98978 * 176.49604 * 8 6 4 10 10 C 1.52585 * 110.64130 * 69.98896 * 9 8 6 11 11 C 1.53042 * 109.98787 * 290.01427 * 10 9 8 12 12 S 1.81671 * 109.55000 * 88.32573 * 6 4 3 13 13 O 1.42101 * 108.66247 * 288.48373 * 12 6 4 14 14 O 1.42101 * 108.66023 * 59.82493 * 12 6 4 15 15 C 1.46500 * 119.99998 * 95.64247 * 3 2 1 16 16 C 1.53502 * 114.20210 * 56.08501 * 15 3 2 17 17 N 1.47068 * 87.98529 * 220.34363 * 16 15 3 18 18 C 1.36938 * 136.06050 * 207.08506 * 17 16 15 19 19 H 1.07997 * 119.99729 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00133 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99814 * 359.71864 * 20 18 17 22 22 Si 1.86795 * 119.99907 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47050 * 89.99605 * 22 20 18 24 24 H 1.48503 * 109.47352 * 209.99785 * 22 20 18 25 25 H 1.48501 * 109.47555 * 329.99701 * 22 20 18 26 26 C 1.47065 * 87.88416 * 27.34445 * 17 16 15 27 27 H 1.08993 * 109.47365 * 175.04814 * 1 2 3 28 28 H 1.08992 * 109.47352 * 295.05520 * 1 2 3 29 29 H 1.09003 * 109.46508 * 55.05238 * 1 2 3 30 30 H 1.09000 * 109.46967 * 240.00167 * 2 1 3 31 31 H 1.09000 * 109.46746 * 120.00644 * 2 1 3 32 32 H 1.09004 * 109.38636 * 296.65836 * 8 6 4 33 33 H 1.09003 * 109.38165 * 56.44388 * 8 6 4 34 34 H 1.08998 * 109.24134 * 190.28898 * 9 8 6 35 35 H 1.09001 * 109.24239 * 309.68989 * 9 8 6 36 36 H 1.09000 * 109.39026 * 50.16718 * 10 9 8 37 37 H 1.08994 * 109.38611 * 169.96350 * 10 9 8 38 38 H 1.08992 * 109.55411 * 183.50395 * 11 10 9 39 39 H 1.09003 * 109.54934 * 303.70022 * 11 10 9 40 40 H 1.08997 * 113.42049 * 189.28534 * 15 3 2 41 41 H 1.09001 * 113.46705 * 105.56927 * 16 15 3 42 42 H 1.09000 * 113.52488 * 335.13649 * 16 15 3 43 43 H 0.97006 * 119.99765 * 179.97438 * 21 20 18 44 44 H 1.09004 * 113.47026 * 87.43381 * 26 17 16 45 45 H 1.08996 * 113.46885 * 217.87774 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1349 2.0548 -1.1615 5 8 1.7519 1.5506 -2.1959 6 6 2.7409 3.4345 -1.1749 7 1 2.5117 3.9426 -0.2382 8 6 2.1660 4.2350 -2.3457 9 6 2.7071 5.6615 -2.3178 10 6 4.1909 5.6810 -2.6731 11 6 5.0081 5.0534 -1.5415 12 16 4.5423 3.3054 -1.3716 13 8 5.0965 2.8006 -0.1644 14 8 4.8194 2.6414 -2.5970 15 6 2.3802 2.0302 1.2626 16 6 3.4364 1.2729 2.0794 17 7 2.6682 1.6093 3.2875 18 6 2.9483 1.7891 4.6159 19 1 3.9613 1.6795 4.9738 20 6 1.9301 2.1123 5.5023 21 7 0.6965 2.2514 5.0651 22 14 2.3121 2.3569 7.3143 23 1 2.6434 3.7831 7.5623 24 1 1.1282 1.9754 8.1257 25 1 3.4683 1.5066 7.6958 26 6 1.4658 1.6613 2.4424 27 1 -0.3634 -1.0237 -0.0887 28 1 -0.3633 0.4352 0.9309 29 1 -0.3632 0.5887 -0.8424 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.4502 3.7585 -3.2840 33 1 1.0791 4.2604 -2.2675 34 1 2.1574 6.2683 -3.0373 35 1 2.5712 6.0778 -1.3196 36 1 4.3506 5.1155 -3.5911 37 1 4.5137 6.7113 -2.8219 38 1 6.0703 5.1270 -1.7743 39 1 4.8020 5.5780 -0.6084 40 1 2.5750 3.0977 1.1607 41 1 4.4227 1.7360 2.0492 42 1 3.4662 0.2041 1.8675 43 1 -0.0151 2.4769 5.6847 44 1 0.9751 0.6949 2.3256 45 1 0.7731 2.4553 2.7213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950493421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:32:55 Heat of formation + Delta-G solvation = -37.990196 kcal Electronic energy + Delta-G solvation = -28453.184687 eV Core-core repulsion = 24600.576393 eV Total energy + Delta-G solvation = -3852.608293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -40.29139 -38.24661 -37.33261 -36.70942 -36.08317 -34.65474 -32.55670 -32.02368 -30.50444 -28.16321 -27.50994 -24.67482 -24.55766 -23.54489 -22.74822 -21.25544 -20.22522 -19.23472 -18.40515 -17.71109 -16.90501 -16.76087 -16.56157 -16.02688 -15.67717 -15.05104 -14.82741 -14.59454 -14.38651 -14.14486 -13.86996 -13.65140 -13.42231 -13.17246 -12.73013 -12.48941 -12.23015 -12.16055 -12.07194 -12.00441 -11.88966 -11.76372 -11.58046 -11.50207 -11.32120 -11.14766 -10.95044 -10.85833 -10.74724 -10.64586 -10.43742 -10.26767 -10.11350 -9.66525 -9.46898 -8.87121 -8.23617 -6.95711 -5.84067 -3.16505 -0.24970 2.43541 2.65294 2.94112 3.35856 3.41206 3.43018 3.55273 3.74148 4.17344 4.22391 4.27381 4.43581 4.48643 4.64194 4.70990 4.93128 5.11719 5.20503 5.24560 5.29866 5.38037 5.45163 5.48758 5.51154 5.60448 5.62590 5.65587 5.74336 5.78112 5.88628 5.95555 6.14802 6.18061 6.44978 6.56096 6.72406 6.75066 7.06000 7.12665 7.43772 7.61972 7.89640 8.17760 8.97249 9.63288 10.54640 11.33647 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014642 B = 0.004266 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.824448 B = 6562.598242 C = 7418.482098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 N -0.583 5.583 4 C 0.530 3.470 5 O -0.524 6.524 6 C -0.605 4.605 7 H 0.160 0.840 8 C -0.090 4.090 9 C -0.142 4.142 10 C -0.112 4.112 11 C -0.605 4.605 12 S 2.420 3.580 13 O -0.913 6.913 14 O -0.922 6.922 15 C 0.065 3.935 16 C 0.108 3.892 17 N -0.604 5.604 18 C -0.214 4.214 19 H 0.085 0.915 20 C -0.007 4.007 21 N -0.921 5.921 22 Si 0.915 3.085 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.149 3.851 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.110 0.890 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.254 0.746 44 H 0.038 0.962 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.824 7.030 -15.426 17.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.011 4.011 3 N -0.314 5.314 4 C 0.314 3.686 5 O -0.401 6.401 6 C -0.713 4.713 7 H 0.177 0.823 8 C -0.129 4.129 9 C -0.179 4.179 10 C -0.150 4.150 11 C -0.734 4.734 12 S 2.598 3.402 13 O -0.910 6.910 14 O -0.919 6.919 15 C -0.039 4.039 16 C -0.019 4.019 17 N -0.330 5.330 18 C -0.341 4.341 19 H 0.102 0.898 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.745 3.255 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.022 3.978 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.154 0.846 39 H 0.156 0.844 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.068 6.051 -15.583 17.205 hybrid contribution -0.404 0.841 1.363 1.652 sum 3.664 6.892 -14.220 16.221 Atomic orbital electron populations 1.22183 0.95516 1.02031 1.02906 1.21488 0.94900 0.81508 1.03185 1.48105 1.62894 1.14192 1.06249 1.19124 0.80381 0.84859 0.84187 1.90698 1.48868 1.68554 1.32005 1.30549 1.27016 1.03435 1.10343 0.82254 1.21189 1.03010 0.93161 0.95502 1.21755 0.95253 0.96932 1.03990 1.21325 0.93937 1.03265 0.96473 1.30291 1.10448 1.24067 1.08630 1.08351 0.77223 0.78649 0.75930 1.93671 1.74321 1.76778 1.46226 1.93600 1.81941 1.70974 1.45374 1.24086 1.01238 0.97238 0.81337 1.22834 0.96259 0.96870 0.85946 1.45325 1.04362 1.80572 1.02777 1.18939 0.94134 1.40743 0.80331 0.89762 1.24800 0.95289 1.02064 0.98248 1.69814 0.99392 1.53844 1.33772 0.86080 0.77111 0.77951 0.84389 1.21472 1.21639 1.20569 1.22588 0.91494 0.99673 0.83999 0.91905 0.91413 0.92373 0.90467 0.89336 0.88868 0.89158 0.89281 0.90360 0.89626 0.89333 0.84565 0.84415 0.87209 0.91812 0.94621 0.93575 0.94479 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 9.99 37.16 0.37 -2.09 16 2 C 0.11 1.75 5.09 -4.04 -0.02 1.73 16 3 N -0.58 -9.78 2.73 -165.73 -0.45 -10.24 16 4 C 0.53 8.60 6.70 -10.99 -0.07 8.53 16 5 O -0.52 -9.60 15.81 5.55 0.09 -9.51 16 6 C -0.60 -7.50 2.20 -27.87 -0.06 -7.56 16 7 H 0.16 1.68 5.86 -51.93 -0.30 1.38 16 8 C -0.09 -0.89 4.53 -26.92 -0.12 -1.02 16 9 C -0.14 -0.96 5.63 -27.15 -0.15 -1.11 16 10 C -0.11 -0.74 5.73 -26.92 -0.15 -0.90 16 11 C -0.60 -4.68 6.35 37.18 0.24 -4.44 16 12 S 2.42 30.59 4.67 -107.50 -0.50 30.09 16 13 O -0.91 -14.37 16.99 -57.81 -0.98 -15.35 16 14 O -0.92 -14.42 17.94 -57.81 -1.04 -15.46 16 15 C 0.07 1.20 4.16 -67.67 -0.28 0.92 16 16 C 0.11 2.26 8.09 -8.51 -0.07 2.19 16 17 N -0.60 -15.10 3.78 -184.61 -0.70 -15.79 16 18 C -0.21 -5.86 10.75 -15.06 -0.16 -6.02 16 19 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 21 N -0.92 -26.40 11.50 55.49 0.64 -25.76 16 22 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.15 3.32 6.49 -8.37 -0.05 3.27 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 1.07 6.52 -51.93 -0.34 0.73 16 29 H 0.06 0.88 8.01 -51.93 -0.42 0.46 16 30 H 0.08 1.18 7.67 -51.93 -0.40 0.78 16 31 H 0.09 1.41 5.93 -51.93 -0.31 1.10 16 32 H 0.09 1.00 7.86 -51.93 -0.41 0.59 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 36 H 0.09 0.58 8.02 -51.93 -0.42 0.17 16 37 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.14 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.14 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.11 1.84 5.60 -51.93 -0.29 1.55 16 41 H 0.06 1.34 7.43 -51.93 -0.39 0.95 16 42 H 0.04 0.73 6.79 -51.93 -0.35 0.38 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.04 0.83 5.31 -51.93 -0.28 0.55 16 45 H 0.08 1.88 7.10 -51.93 -0.37 1.51 16 LS Contribution 360.70 15.07 5.44 5.44 Total: -1.00 -35.37 360.70 -9.94 -45.31 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.77 Total: 1.51 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -0.64 Total: -6.80 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.51 Total: -51.79 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -1.93 Total: -40.32 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 30.59 SS G_CDS: -0.50 Total: 30.09 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.37 -9.94 -45.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950493421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.316 kcal (2) G-P(sol) polarization free energy of solvation -35.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds