Wall clock time and date at job start Sat Apr 11 2020 02:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47244 * 2 1 4 4 C 1.34779 * 120.00395 * 275.64092 * 3 2 1 5 5 O 1.21284 * 119.99494 * 4.93827 * 4 3 2 6 6 C 1.50694 * 120.00253 * 184.93042 * 4 3 2 7 7 H 1.09003 * 109.54925 * 328.13245 * 6 4 3 8 8 C 1.53034 * 109.55353 * 207.93974 * 6 4 3 9 9 C 1.52588 * 109.98978 * 176.49604 * 8 6 4 10 10 C 1.52585 * 110.64130 * 69.98896 * 9 8 6 11 11 C 1.53042 * 109.98787 * 290.01427 * 10 9 8 12 12 S 1.81671 * 109.55000 * 88.32573 * 6 4 3 13 13 O 1.42101 * 108.66247 * 288.48373 * 12 6 4 14 14 O 1.42101 * 108.66023 * 59.82493 * 12 6 4 15 15 C 1.46500 * 119.99998 * 95.64247 * 3 2 1 16 16 C 1.53502 * 114.20210 * 56.08501 * 15 3 2 17 17 N 1.47068 * 87.98529 * 220.34363 * 16 15 3 18 18 C 1.36938 * 136.06050 * 207.08506 * 17 16 15 19 19 H 1.07997 * 119.99729 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00133 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99814 * 359.71864 * 20 18 17 22 22 Si 1.86795 * 119.99907 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47050 * 89.99605 * 22 20 18 24 24 H 1.48503 * 109.47352 * 209.99785 * 22 20 18 25 25 H 1.48501 * 109.47555 * 329.99701 * 22 20 18 26 26 C 1.47065 * 87.88416 * 27.34445 * 17 16 15 27 27 H 1.08993 * 109.47365 * 175.04814 * 1 2 3 28 28 H 1.08992 * 109.47352 * 295.05520 * 1 2 3 29 29 H 1.09003 * 109.46508 * 55.05238 * 1 2 3 30 30 H 1.09000 * 109.46967 * 240.00167 * 2 1 3 31 31 H 1.09000 * 109.46746 * 120.00644 * 2 1 3 32 32 H 1.09004 * 109.38636 * 296.65836 * 8 6 4 33 33 H 1.09003 * 109.38165 * 56.44388 * 8 6 4 34 34 H 1.08998 * 109.24134 * 190.28898 * 9 8 6 35 35 H 1.09001 * 109.24239 * 309.68989 * 9 8 6 36 36 H 1.09000 * 109.39026 * 50.16718 * 10 9 8 37 37 H 1.08994 * 109.38611 * 169.96350 * 10 9 8 38 38 H 1.08992 * 109.55411 * 183.50395 * 11 10 9 39 39 H 1.09003 * 109.54934 * 303.70022 * 11 10 9 40 40 H 1.08997 * 113.42049 * 189.28534 * 15 3 2 41 41 H 1.09001 * 113.46705 * 105.56927 * 16 15 3 42 42 H 1.09000 * 113.52488 * 335.13649 * 16 15 3 43 43 H 0.97006 * 119.99765 * 179.97438 * 21 20 18 44 44 H 1.09004 * 113.47026 * 87.43381 * 26 17 16 45 45 H 1.08996 * 113.46885 * 217.87774 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1349 2.0548 -1.1615 5 8 1.7519 1.5506 -2.1959 6 6 2.7409 3.4345 -1.1749 7 1 2.5117 3.9426 -0.2382 8 6 2.1660 4.2350 -2.3457 9 6 2.7071 5.6615 -2.3178 10 6 4.1909 5.6810 -2.6731 11 6 5.0081 5.0534 -1.5415 12 16 4.5423 3.3054 -1.3716 13 8 5.0965 2.8006 -0.1644 14 8 4.8194 2.6414 -2.5970 15 6 2.3802 2.0302 1.2626 16 6 3.4364 1.2729 2.0794 17 7 2.6682 1.6093 3.2875 18 6 2.9483 1.7891 4.6159 19 1 3.9613 1.6795 4.9738 20 6 1.9301 2.1123 5.5023 21 7 0.6965 2.2514 5.0651 22 14 2.3121 2.3569 7.3143 23 1 2.6434 3.7831 7.5623 24 1 1.1282 1.9754 8.1257 25 1 3.4683 1.5066 7.6958 26 6 1.4658 1.6613 2.4424 27 1 -0.3634 -1.0237 -0.0887 28 1 -0.3633 0.4352 0.9309 29 1 -0.3632 0.5887 -0.8424 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.4502 3.7585 -3.2840 33 1 1.0791 4.2604 -2.2675 34 1 2.1574 6.2683 -3.0373 35 1 2.5712 6.0778 -1.3196 36 1 4.3506 5.1155 -3.5911 37 1 4.5137 6.7113 -2.8219 38 1 6.0703 5.1270 -1.7743 39 1 4.8020 5.5780 -0.6084 40 1 2.5750 3.0977 1.1607 41 1 4.4227 1.7360 2.0492 42 1 3.4662 0.2041 1.8675 43 1 -0.0151 2.4769 5.6847 44 1 0.9751 0.6949 2.3256 45 1 0.7731 2.4553 2.7213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950493421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:32:53 Heat of formation + Delta-G solvation = -63.847678 kcal Electronic energy + Delta-G solvation = -28454.305951 eV Core-core repulsion = 24600.576393 eV Total energy + Delta-G solvation = -3853.729558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.67552 -39.74624 -38.34595 -37.55785 -37.13074 -36.16525 -34.06776 -33.43262 -31.66654 -29.51886 -28.86371 -26.41293 -25.48973 -25.33107 -23.87436 -22.01193 -21.76263 -20.37938 -19.58250 -19.13424 -18.47842 -17.93353 -17.63736 -17.34244 -16.76507 -16.66196 -15.96293 -15.90702 -15.63360 -15.39774 -14.93189 -14.74215 -14.48793 -14.39562 -14.09957 -13.81464 -13.65822 -13.38614 -13.27938 -13.23011 -13.09398 -12.93740 -12.78984 -12.77021 -12.59454 -12.54795 -12.25965 -12.14590 -11.96604 -11.95802 -11.77157 -11.56568 -11.36815 -11.33373 -10.89331 -10.80433 -9.71655 -8.94911 -7.91694 -5.25750 -1.17594 1.31628 1.48846 1.50228 1.57914 1.58938 1.68807 2.45953 2.58689 2.86581 3.07589 3.29859 3.43132 3.57990 3.64450 3.67907 3.74963 3.78520 4.03898 4.12063 4.16334 4.28460 4.30645 4.38118 4.47005 4.56033 4.68502 4.75499 4.80982 4.87689 4.91685 4.98617 5.00442 5.15775 5.17852 5.19146 5.24583 5.29751 5.36970 5.43547 5.51814 5.88687 6.21526 6.85261 6.90307 7.57832 8.55970 9.25712 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014642 B = 0.004266 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.824448 B = 6562.598242 C = 7418.482098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.104 3.896 3 N -0.588 5.588 4 C 0.524 3.476 5 O -0.549 6.549 6 C -0.605 4.605 7 H 0.178 0.822 8 C -0.090 4.090 9 C -0.139 4.139 10 C -0.118 4.118 11 C -0.570 4.570 12 S 2.400 3.600 13 O -0.955 6.955 14 O -0.965 6.965 15 C 0.097 3.903 16 C 0.108 3.892 17 N -0.631 5.631 18 C -0.229 4.229 19 H 0.086 0.914 20 C -0.060 4.060 21 N -0.950 5.950 22 Si 0.980 3.020 23 H -0.282 1.282 24 H -0.295 1.295 25 H -0.271 1.271 26 C 0.151 3.849 27 H 0.084 0.916 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.124 0.876 38 H 0.161 0.839 39 H 0.167 0.833 40 H 0.130 0.870 41 H 0.063 0.937 42 H 0.040 0.960 43 H 0.250 0.750 44 H 0.034 0.966 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.683 9.532 -15.894 19.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.018 4.018 3 N -0.319 5.319 4 C 0.310 3.690 5 O -0.427 6.427 6 C -0.714 4.714 7 H 0.195 0.805 8 C -0.129 4.129 9 C -0.176 4.176 10 C -0.156 4.156 11 C -0.704 4.704 12 S 2.583 3.417 13 O -0.952 6.952 14 O -0.962 6.962 15 C -0.008 4.008 16 C -0.019 4.019 17 N -0.357 5.357 18 C -0.356 4.356 19 H 0.104 0.896 20 C -0.253 4.253 21 N -0.599 5.599 22 Si 0.808 3.192 23 H -0.208 1.208 24 H -0.222 1.222 25 H -0.196 1.196 26 C 0.025 3.975 27 H 0.103 0.897 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.129 0.871 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.142 0.858 38 H 0.178 0.822 39 H 0.185 0.815 40 H 0.148 0.852 41 H 0.082 0.918 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.934 8.493 -16.078 18.841 hybrid contribution -0.648 0.069 1.404 1.548 sum 4.286 8.562 -14.674 17.522 Atomic orbital electron populations 1.22084 0.94588 1.03202 1.01738 1.21589 0.95690 0.81350 1.03125 1.48111 1.63231 1.14583 1.05997 1.19754 0.79681 0.86196 0.83329 1.90678 1.49854 1.69615 1.32547 1.30645 1.27003 1.01260 1.12444 0.80484 1.21284 1.02969 0.95011 0.93642 1.21812 0.95496 0.94499 1.05835 1.21504 0.93546 1.04948 0.95580 1.30090 1.12017 1.17378 1.10935 1.08683 0.76890 0.81621 0.74457 1.93617 1.74764 1.79551 1.47289 1.93545 1.82290 1.74077 1.46278 1.23633 0.98105 0.98013 0.81001 1.22909 0.96578 0.97398 0.84978 1.45600 1.06139 1.80924 1.03058 1.19285 0.94386 1.40205 0.81767 0.89618 1.25591 0.95173 1.02317 1.02230 1.69988 1.00087 1.54996 1.34779 0.85060 0.76783 0.78018 0.79328 1.20823 1.22153 1.19615 1.22511 0.90971 0.98674 0.85379 0.89722 0.92866 0.92921 0.90075 0.89768 0.90268 0.89367 0.87072 0.88624 0.90051 0.85807 0.82154 0.81506 0.85221 0.91841 0.94198 0.94089 0.94815 0.93178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.68 9.99 71.98 0.72 -3.96 16 2 C 0.10 3.35 5.09 86.38 0.44 3.79 16 3 N -0.59 -19.91 2.73 -796.64 -2.18 -22.08 16 4 C 0.52 17.04 6.70 87.65 0.59 17.63 16 5 O -0.55 -20.39 15.81 -3.04 -0.05 -20.44 16 6 C -0.61 -14.33 2.20 29.86 0.07 -14.26 16 7 H 0.18 3.40 5.86 -2.39 -0.01 3.38 16 8 C -0.09 -1.64 4.53 30.47 0.14 -1.50 16 9 C -0.14 -1.32 5.63 30.32 0.17 -1.15 16 10 C -0.12 -1.03 5.73 30.47 0.17 -0.85 16 11 C -0.57 -6.46 6.35 72.00 0.46 -6.00 16 12 S 2.40 58.21 4.67 -56.49 -0.26 57.95 16 13 O -0.96 -29.78 16.99 -127.40 -2.17 -31.94 16 14 O -0.96 -30.44 17.94 -127.40 -2.29 -32.73 16 15 C 0.10 3.59 4.16 45.55 0.19 3.78 16 16 C 0.11 4.55 8.09 83.18 0.67 5.22 16 17 N -0.63 -31.93 3.78 -738.00 -2.79 -34.72 16 18 C -0.23 -12.59 10.75 84.03 0.90 -11.69 16 19 H 0.09 4.55 7.83 -2.91 -0.02 4.52 16 20 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 21 N -0.95 -55.30 11.50 21.65 0.25 -55.05 16 22 Si 0.98 44.44 29.55 68.60 2.03 46.47 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 26 C 0.15 6.89 6.49 83.27 0.54 7.43 16 27 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.05 1.72 6.52 -2.39 -0.02 1.70 16 29 H 0.05 1.60 8.01 -2.39 -0.02 1.58 16 30 H 0.08 2.53 7.67 -2.39 -0.02 2.51 16 31 H 0.08 2.75 5.93 -2.39 -0.01 2.73 16 32 H 0.08 1.66 7.86 -2.38 -0.02 1.64 16 33 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.10 0.63 8.09 -2.39 -0.02 0.61 16 36 H 0.08 0.85 8.02 -2.39 -0.02 0.83 16 37 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.16 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.17 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.13 4.23 5.60 -2.39 -0.01 4.22 16 41 H 0.06 2.68 7.43 -2.39 -0.02 2.67 16 42 H 0.04 1.66 6.79 -2.39 -0.02 1.64 16 43 H 0.25 14.15 8.31 -92.70 -0.77 13.38 16 44 H 0.03 1.56 5.31 -2.38 -0.01 1.55 16 45 H 0.05 2.54 7.10 -2.39 -0.02 2.52 16 Total: -1.00 -79.14 360.70 -0.93 -80.07 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 1.00 Total: 16.87 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 5.52 Total: -4.39 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -4.72 Total: -111.85 kcal Atomic # 8 Polarization: -80.61 SS G_CDS: -4.50 Total: -85.11 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: 58.21 SS G_CDS: -0.26 Total: 57.95 kcal Total: -79.14 -0.93 -80.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950493421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.225 kcal (2) G-P(sol) polarization free energy of solvation -79.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds