Wall clock time and date at job start Sat Apr 11 2020 02:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00368 * 2 1 4 4 H 1.48499 * 109.47140 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46974 * 299.99923 * 3 2 1 6 6 H 1.48495 * 109.46832 * 59.99620 * 3 2 1 7 7 C 1.38819 * 119.99609 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99452 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00470 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00483 * 179.97438 * 9 7 2 11 11 H 1.09005 * 112.84611 * 336.20026 * 10 9 7 12 12 C 1.53786 * 113.68877 * 107.46371 * 10 9 7 13 13 C 1.53784 * 87.07539 * 139.99555 * 12 10 9 14 14 H 1.09003 * 113.68552 * 220.00497 * 13 12 10 15 15 N 1.46496 * 113.61229 * 89.12224 * 13 12 10 16 16 C 1.34779 * 120.00442 * 107.49814 * 15 13 12 17 17 O 1.21692 * 119.99697 * 359.97438 * 16 15 13 18 18 C 1.46653 * 119.99951 * 179.97438 * 16 15 13 19 19 C 1.36548 * 125.98618 * 180.02562 * 18 16 15 20 20 C 1.40362 * 106.71009 * 179.97438 * 19 18 16 21 21 C 1.35132 * 107.11380 * 0.02562 * 20 19 18 22 22 C 1.50705 * 125.61774 * 179.97438 * 21 20 19 23 23 N 1.46500 * 109.46775 * 90.00016 * 22 21 20 24 24 C 1.34946 * 126.03644 * 124.95183 * 23 22 21 25 25 C 1.35316 * 107.74870 * 180.02562 * 24 23 22 26 26 C 1.39875 * 107.91722 * 0.02562 * 25 24 23 27 27 N 1.30829 * 108.20298 * 0.02562 * 26 25 24 28 28 O 1.33933 * 108.76694 * 0.26330 * 21 20 19 29 29 C 1.53777 * 87.08486 * 334.56671 * 13 12 10 30 30 H 0.96996 * 119.99526 * 0.02562 * 1 2 3 31 31 H 0.97006 * 120.00056 * 0.02562 * 9 7 2 32 32 H 1.09002 * 113.61163 * 25.44876 * 12 10 9 33 33 H 1.09002 * 113.61581 * 254.54279 * 12 10 9 34 34 H 0.97005 * 119.99898 * 287.49335 * 15 13 12 35 35 H 1.07998 * 126.64670 * 359.97438 * 19 18 16 36 36 H 1.08004 * 126.44635 * 179.97438 * 20 19 18 37 37 H 1.08996 * 109.46901 * 330.00195 * 22 21 20 38 38 H 1.08993 * 109.47283 * 210.00443 * 22 21 20 39 39 H 1.07999 * 126.12479 * 0.04451 * 24 23 22 40 40 H 1.07999 * 126.03957 * 180.26092 * 25 24 23 41 41 H 1.08004 * 125.89587 * 180.02562 * 26 25 24 42 42 H 1.08999 * 113.61415 * 139.97687 * 29 13 12 43 43 H 1.08999 * 113.61574 * 270.80403 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 1 3.0656 -3.5639 -0.4048 12 6 2.0009 -4.4033 1.3439 13 6 1.8496 -5.6982 0.5282 14 1 1.1362 -6.4035 0.9546 15 7 3.1271 -6.3233 0.1774 16 6 3.5134 -7.4586 0.7927 17 8 2.8011 -7.9640 1.6400 18 6 4.7921 -8.0846 0.4410 19 6 5.3009 -9.2297 0.9836 20 6 6.5359 -9.4591 0.3572 21 6 6.7247 -8.4563 -0.5287 22 6 7.9228 -8.2941 -1.4285 23 7 7.6780 -8.9854 -2.6967 24 6 7.7538 -8.4368 -3.9274 25 6 7.4575 -9.4021 -4.8282 26 6 7.1909 -10.5808 -4.1239 27 7 7.3220 -10.3320 -2.8462 28 8 5.6747 -7.6269 -0.4709 29 6 1.2601 -4.8288 -0.5950 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 1.1230 -4.1590 1.9421 33 1 2.9296 -4.3512 1.9122 34 1 3.6951 -5.9203 -0.4978 35 1 4.8420 -9.8406 1.7469 36 1 7.2091 -10.2818 0.5481 37 1 8.8008 -8.7221 -0.9449 38 1 8.0932 -7.2346 -1.6191 39 1 8.0060 -7.4112 -4.1529 40 1 7.4349 -9.2843 -5.9015 41 1 6.9232 -11.5321 -4.5596 42 1 1.5907 -5.1203 -1.5919 43 1 0.1796 -4.7021 -0.5276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020184858.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:33:14 Heat of formation + Delta-G solvation = 102.018065 kcal Electronic energy + Delta-G solvation = -26685.523185 eV Core-core repulsion = 22735.834905 eV Total energy + Delta-G solvation = -3949.688280 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.05923 -41.40311 -39.91513 -37.98858 -34.66815 -34.14696 -33.29819 -32.66502 -30.79541 -30.15399 -29.69604 -27.03831 -25.18153 -24.70080 -23.23373 -22.17933 -22.02624 -21.40344 -21.16553 -20.44492 -19.04792 -18.54523 -17.79390 -17.13489 -16.69390 -16.22222 -15.88940 -15.45671 -15.05400 -14.68336 -14.60330 -14.34716 -13.98240 -13.84442 -13.77892 -13.44410 -13.29637 -13.28921 -13.12511 -12.71921 -12.37952 -12.20282 -11.90816 -11.68633 -11.02678 -10.95370 -10.84559 -10.39621 -10.38723 -10.33000 -10.18821 -9.94847 -9.85198 -9.61651 -9.14329 -9.00212 -8.93325 -8.79001 -7.02175 -5.83386 -3.12552 0.65110 1.48317 1.79334 2.22860 2.41815 2.53090 3.04038 3.05890 3.38991 3.44518 3.46956 4.00383 4.09084 4.46176 4.54353 4.55803 4.61316 4.67670 4.78064 4.96758 5.14405 5.19361 5.31241 5.39104 5.40584 5.41789 5.44904 5.55393 5.66647 5.81852 5.84251 6.01178 6.05347 6.21175 6.26581 6.27313 6.35967 6.51355 6.56159 6.58999 6.63223 7.00941 7.32844 7.42620 7.64437 8.00873 8.34856 9.46292 10.03148 10.37746 11.38953 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.012852 B = 0.002386 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.149968 B =11734.664743 C =12962.218575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.711 5.711 10 C 0.167 3.833 11 H 0.073 0.927 12 C -0.175 4.175 13 C 0.113 3.887 14 H 0.100 0.900 15 N -0.693 5.693 16 C 0.602 3.398 17 O -0.520 6.520 18 C -0.055 4.055 19 C -0.127 4.127 20 C -0.172 4.172 21 C -0.018 4.018 22 C 0.218 3.782 23 N -0.378 5.378 24 C 0.057 3.943 25 C -0.272 4.272 26 C 0.046 3.954 27 N -0.288 5.288 28 O -0.157 6.157 29 C -0.159 4.159 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.405 0.595 35 H 0.163 0.837 36 H 0.159 0.841 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.176 0.824 40 H 0.149 0.851 41 H 0.184 0.816 42 H 0.065 0.935 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.493 -21.036 -6.144 28.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.349 5.349 10 C 0.054 3.946 11 H 0.091 0.909 12 C -0.217 4.217 13 C 0.008 3.992 14 H 0.118 0.882 15 N -0.342 5.342 16 C 0.387 3.613 17 O -0.397 6.397 18 C -0.108 4.108 19 C -0.148 4.148 20 C -0.193 4.193 21 C -0.071 4.071 22 C 0.097 3.903 23 N -0.161 5.161 24 C -0.087 4.087 25 C -0.301 4.301 26 C -0.141 4.141 27 N -0.108 5.108 28 O -0.053 6.053 29 C -0.198 4.198 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.240 0.760 35 H 0.181 0.819 36 H 0.176 0.824 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.194 0.806 40 H 0.167 0.833 41 H 0.200 0.800 42 H 0.083 0.917 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 17.003 -21.299 -4.427 27.611 hybrid contribution 0.446 1.345 -1.071 1.776 sum 17.450 -19.954 -5.498 27.072 Atomic orbital electron populations 1.69669 1.05140 1.25709 1.57357 1.24781 0.95540 0.97829 1.02717 0.86115 0.78771 0.84038 0.77235 1.20541 1.21803 1.21796 1.19328 0.91074 0.84191 1.43041 0.91078 1.42400 1.05792 0.99820 1.86921 1.21620 0.95078 0.85242 0.92630 0.90871 1.24325 1.02200 0.94874 1.00332 1.21934 0.84329 0.94344 0.98605 0.88220 1.45639 1.22343 1.24803 1.41411 1.16519 0.82547 0.80624 0.81611 1.90884 1.52565 1.63805 1.32486 1.22269 0.93215 0.98722 0.96614 1.21979 0.95143 0.96300 1.01337 1.21607 0.98666 1.00299 0.98678 1.22421 0.90663 0.92738 1.01277 1.19977 0.91956 0.98576 0.79824 1.48719 1.54352 1.07930 1.05142 1.22666 1.01348 1.00184 0.84540 1.21572 1.14729 0.93137 1.00677 1.23966 0.99578 0.99842 0.90679 1.77411 1.21256 0.92926 1.19256 1.84000 1.25871 1.45856 1.49567 1.23871 1.01747 0.97086 0.97141 0.93441 0.77964 0.89276 0.92295 0.75986 0.81915 0.82375 0.86182 0.86371 0.80643 0.83343 0.79958 0.91673 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.76 13.06 55.49 0.72 -27.03 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.25 -6.68 9.97 -15.06 -0.15 -6.83 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -17.41 5.40 -52.63 -0.28 -17.70 16 10 C 0.17 3.17 4.35 -67.12 -0.29 2.88 16 11 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 12 C -0.18 -3.06 7.68 -25.91 -0.20 -3.26 16 13 C 0.11 1.72 4.32 -67.12 -0.29 1.43 16 14 H 0.10 1.56 7.46 -51.93 -0.39 1.18 16 15 N -0.69 -9.59 5.26 -54.33 -0.29 -9.87 16 16 C 0.60 8.91 7.79 -12.86 -0.10 8.81 16 17 O -0.52 -9.14 16.46 5.20 0.09 -9.06 16 18 C -0.06 -0.71 7.13 -36.80 -0.26 -0.97 16 19 C -0.13 -1.44 10.62 -39.39 -0.42 -1.86 16 20 C -0.17 -1.63 10.77 -39.89 -0.43 -2.06 16 21 C -0.02 -0.17 6.75 -35.41 -0.24 -0.41 16 22 C 0.22 1.33 7.04 -5.19 -0.04 1.30 16 23 N -0.38 -3.17 3.67 -62.55 -0.23 -3.40 16 24 C 0.06 0.41 11.45 -17.22 -0.20 0.21 16 25 C -0.27 -2.02 10.80 -40.01 -0.43 -2.45 16 26 C 0.05 0.39 12.03 -17.37 -0.21 0.18 16 27 N -0.29 -2.98 12.41 30.63 0.38 -2.60 16 28 O -0.16 -1.81 10.40 5.00 0.05 -1.76 16 29 C -0.16 -2.50 7.58 -25.92 -0.20 -2.70 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.39 10.03 7.93 -40.82 -0.32 9.70 16 32 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.41 4.96 8.46 -40.82 -0.35 4.62 16 35 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 37 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.12 0.42 8.07 -51.93 -0.42 0.00 16 39 H 0.18 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.18 1.02 8.06 -52.48 -0.42 0.59 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.09 1.51 8.12 -51.93 -0.42 1.09 16 LS Contribution 378.44 15.07 5.70 5.70 Total: -1.00 -34.75 378.44 -8.10 -42.85 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -5.67 Total: 12.05 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -3.55 Total: -6.20 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.30 Total: -60.60 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.14 Total: -10.82 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.75 -8.10 -42.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020184858.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.864 kcal (2) G-P(sol) polarization free energy of solvation -34.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds