Wall clock time and date at job start Sat Apr 11 2020 02:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00368 * 2 1 4 4 H 1.48499 * 109.47140 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46974 * 299.99923 * 3 2 1 6 6 H 1.48495 * 109.46832 * 59.99620 * 3 2 1 7 7 C 1.38819 * 119.99609 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99452 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00470 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00483 * 179.97438 * 9 7 2 11 11 H 1.09005 * 112.84611 * 336.20026 * 10 9 7 12 12 C 1.53786 * 113.68877 * 107.46371 * 10 9 7 13 13 C 1.53784 * 87.07539 * 139.99555 * 12 10 9 14 14 H 1.09003 * 113.68552 * 220.00497 * 13 12 10 15 15 N 1.46496 * 113.61229 * 89.12224 * 13 12 10 16 16 C 1.34779 * 120.00442 * 107.49814 * 15 13 12 17 17 O 1.21692 * 119.99697 * 359.97438 * 16 15 13 18 18 C 1.46653 * 119.99951 * 179.97438 * 16 15 13 19 19 C 1.36548 * 125.98618 * 180.02562 * 18 16 15 20 20 C 1.40362 * 106.71009 * 179.97438 * 19 18 16 21 21 C 1.35132 * 107.11380 * 0.02562 * 20 19 18 22 22 C 1.50705 * 125.61774 * 179.97438 * 21 20 19 23 23 N 1.46500 * 109.46775 * 90.00016 * 22 21 20 24 24 C 1.34946 * 126.03644 * 124.95183 * 23 22 21 25 25 C 1.35316 * 107.74870 * 180.02562 * 24 23 22 26 26 C 1.39875 * 107.91722 * 0.02562 * 25 24 23 27 27 N 1.30829 * 108.20298 * 0.02562 * 26 25 24 28 28 O 1.33933 * 108.76694 * 0.26330 * 21 20 19 29 29 C 1.53777 * 87.08486 * 334.56671 * 13 12 10 30 30 H 0.96996 * 119.99526 * 0.02562 * 1 2 3 31 31 H 0.97006 * 120.00056 * 0.02562 * 9 7 2 32 32 H 1.09002 * 113.61163 * 25.44876 * 12 10 9 33 33 H 1.09002 * 113.61581 * 254.54279 * 12 10 9 34 34 H 0.97005 * 119.99898 * 287.49335 * 15 13 12 35 35 H 1.07998 * 126.64670 * 359.97438 * 19 18 16 36 36 H 1.08004 * 126.44635 * 179.97438 * 20 19 18 37 37 H 1.08996 * 109.46901 * 330.00195 * 22 21 20 38 38 H 1.08993 * 109.47283 * 210.00443 * 22 21 20 39 39 H 1.07999 * 126.12479 * 0.04451 * 24 23 22 40 40 H 1.07999 * 126.03957 * 180.26092 * 25 24 23 41 41 H 1.08004 * 125.89587 * 180.02562 * 26 25 24 42 42 H 1.08999 * 113.61415 * 139.97687 * 29 13 12 43 43 H 1.08999 * 113.61574 * 270.80403 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 1 3.0656 -3.5639 -0.4048 12 6 2.0009 -4.4033 1.3439 13 6 1.8496 -5.6982 0.5282 14 1 1.1362 -6.4035 0.9546 15 7 3.1271 -6.3233 0.1774 16 6 3.5134 -7.4586 0.7927 17 8 2.8011 -7.9640 1.6400 18 6 4.7921 -8.0846 0.4410 19 6 5.3009 -9.2297 0.9836 20 6 6.5359 -9.4591 0.3572 21 6 6.7247 -8.4563 -0.5287 22 6 7.9228 -8.2941 -1.4285 23 7 7.6780 -8.9854 -2.6967 24 6 7.7538 -8.4368 -3.9274 25 6 7.4575 -9.4021 -4.8282 26 6 7.1909 -10.5808 -4.1239 27 7 7.3220 -10.3320 -2.8462 28 8 5.6747 -7.6269 -0.4709 29 6 1.2601 -4.8288 -0.5950 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 1.1230 -4.1590 1.9421 33 1 2.9296 -4.3512 1.9122 34 1 3.6951 -5.9203 -0.4978 35 1 4.8420 -9.8406 1.7469 36 1 7.2091 -10.2818 0.5481 37 1 8.8008 -8.7221 -0.9449 38 1 8.0932 -7.2346 -1.6191 39 1 8.0060 -7.4112 -4.1529 40 1 7.4349 -9.2843 -5.9015 41 1 6.9232 -11.5321 -4.5596 42 1 1.5907 -5.1203 -1.5919 43 1 0.1796 -4.7021 -0.5276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020184858.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:33:13 Heat of formation + Delta-G solvation = 78.395663 kcal Electronic energy + Delta-G solvation = -26686.547529 eV Core-core repulsion = 22735.834905 eV Total energy + Delta-G solvation = -3950.712624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.88114 -41.94795 -41.17128 -39.35284 -35.87031 -35.23723 -34.29543 -34.01055 -31.97345 -31.32581 -30.55799 -27.79921 -26.60884 -26.37572 -24.50417 -23.40680 -22.93772 -21.98936 -21.87012 -21.27515 -20.46144 -19.63525 -19.05373 -18.36854 -17.61113 -17.24459 -16.85768 -16.72866 -16.09020 -15.91249 -15.80643 -15.52273 -15.33092 -14.94545 -14.48362 -14.44344 -14.21830 -14.07826 -13.99004 -13.64230 -13.62096 -13.45211 -13.35684 -12.91151 -12.85965 -12.63237 -12.11741 -11.91403 -11.80220 -11.60057 -11.53503 -11.25877 -11.14948 -10.87547 -10.43523 -10.28571 -9.77735 -9.51955 -9.00716 -7.95665 -5.24348 -0.23055 0.88730 1.08629 1.40550 1.47697 1.48417 1.58190 1.84581 1.97361 1.98321 2.00532 2.55928 3.26290 3.35614 3.62122 3.66228 3.76040 3.80052 3.82614 3.92329 4.08470 4.24513 4.27646 4.27938 4.28603 4.47497 4.62471 4.65554 4.69822 4.79777 4.85346 4.87824 4.92531 5.05809 5.13278 5.16285 5.17878 5.24630 5.48599 5.57995 5.69739 5.74861 6.09813 6.26259 6.32458 6.76603 6.88606 7.32746 8.08380 8.31385 9.27730 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.012852 B = 0.002386 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.149968 B =11734.664743 C =12962.218575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.296 1.296 7 C -0.243 4.243 8 H 0.078 0.922 9 N -0.726 5.726 10 C 0.154 3.846 11 H 0.081 0.919 12 C -0.170 4.170 13 C 0.131 3.869 14 H 0.099 0.901 15 N -0.686 5.686 16 C 0.603 3.397 17 O -0.555 6.555 18 C -0.086 4.086 19 C -0.124 4.124 20 C -0.180 4.180 21 C -0.007 4.007 22 C 0.212 3.788 23 N -0.385 5.385 24 C 0.057 3.943 25 C -0.287 4.287 26 C 0.035 3.965 27 N -0.329 5.329 28 O -0.163 6.163 29 C -0.142 4.142 30 H 0.251 0.749 31 H 0.375 0.625 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.414 0.586 35 H 0.166 0.834 36 H 0.179 0.821 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.208 0.792 40 H 0.165 0.835 41 H 0.200 0.800 42 H 0.084 0.916 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.030 -21.516 -7.248 30.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.220 1.220 6 H -0.224 1.224 7 C -0.375 4.375 8 H 0.096 0.904 9 N -0.364 5.364 10 C 0.044 3.956 11 H 0.099 0.901 12 C -0.212 4.212 13 C 0.025 3.975 14 H 0.117 0.883 15 N -0.335 5.335 16 C 0.391 3.609 17 O -0.436 6.436 18 C -0.138 4.138 19 C -0.145 4.145 20 C -0.199 4.199 21 C -0.060 4.060 22 C 0.092 3.908 23 N -0.169 5.169 24 C -0.087 4.087 25 C -0.316 4.316 26 C -0.151 4.151 27 N -0.150 5.150 28 O -0.059 6.059 29 C -0.182 4.182 30 H 0.060 0.940 31 H 0.207 0.793 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.251 0.749 35 H 0.184 0.816 36 H 0.197 0.803 37 H 0.163 0.837 38 H 0.166 0.834 39 H 0.225 0.775 40 H 0.182 0.818 41 H 0.217 0.783 42 H 0.102 0.898 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 19.596 -21.821 -5.547 29.849 hybrid contribution -0.224 1.370 -0.763 1.584 sum 19.372 -20.451 -6.310 28.868 Atomic orbital electron populations 1.69820 1.06639 1.26007 1.59533 1.25583 0.96379 1.01170 1.03774 0.85093 0.78360 0.79888 0.76546 1.18830 1.22028 1.22371 1.19727 0.91563 0.85285 1.40894 0.90393 1.42585 1.05472 1.00973 1.87324 1.21941 0.95541 0.84092 0.94062 0.90132 1.24164 1.01581 0.95995 0.99496 1.21649 0.84967 0.93383 0.97513 0.88340 1.45522 1.21894 1.24620 1.41501 1.16721 0.82969 0.80344 0.80900 1.90857 1.53922 1.64760 1.34030 1.21867 0.93438 0.99787 0.98713 1.22232 0.95730 0.95619 1.00873 1.21876 0.98290 1.01140 0.98638 1.23158 0.90405 0.91677 1.00730 1.20431 0.90913 1.00509 0.78961 1.48864 1.54428 1.07515 1.06080 1.23260 1.00074 1.01468 0.83948 1.21908 1.14924 0.92982 1.01752 1.24410 0.99061 1.01095 0.90557 1.77343 1.22984 0.94396 1.20294 1.83982 1.26242 1.46413 1.49282 1.23692 1.01289 0.94992 0.98184 0.94037 0.79281 0.90509 0.92501 0.74894 0.81594 0.80312 0.83693 0.83415 0.77500 0.81754 0.78339 0.89754 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.76 13.06 21.65 0.28 -58.47 16 2 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.97 45.36 29.55 68.60 2.03 47.39 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.24 -13.16 9.97 84.04 0.84 -12.32 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 9 N -0.73 -35.58 5.40 -320.43 -1.73 -37.32 16 10 C 0.15 5.72 4.35 45.52 0.20 5.92 16 11 H 0.08 2.88 8.10 -2.38 -0.02 2.86 16 12 C -0.17 -5.90 7.68 31.12 0.24 -5.66 16 13 C 0.13 3.86 4.32 45.52 0.20 4.06 16 14 H 0.10 3.03 7.46 -2.39 -0.02 3.01 16 15 N -0.69 -18.24 5.26 -444.03 -2.33 -20.58 16 16 C 0.60 17.61 7.79 86.44 0.67 18.28 16 17 O -0.56 -19.63 16.46 -4.32 -0.07 -19.70 16 18 C -0.09 -2.13 7.13 24.07 0.17 -1.95 16 19 C -0.12 -2.71 10.62 22.39 0.24 -2.47 16 20 C -0.18 -3.07 10.77 22.07 0.24 -2.84 16 21 C -0.01 -0.11 6.75 24.97 0.17 0.05 16 22 C 0.21 1.91 7.04 85.63 0.60 2.51 16 23 N -0.39 -5.48 3.67 -351.80 -1.29 -6.77 16 24 C 0.06 0.64 11.45 83.54 0.96 1.60 16 25 C -0.29 -3.67 10.80 21.99 0.24 -3.43 16 26 C 0.03 0.54 12.03 85.24 1.03 1.57 16 27 N -0.33 -6.30 12.41 -57.02 -0.71 -7.01 16 28 O -0.16 -3.47 10.40 -5.04 -0.05 -3.52 16 29 C -0.14 -4.31 7.58 31.12 0.24 -4.07 16 30 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 31 H 0.37 19.79 7.93 -92.70 -0.73 19.06 16 32 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 33 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.41 9.48 8.46 -92.70 -0.78 8.70 16 35 H 0.17 3.39 8.06 -2.91 -0.02 3.37 16 36 H 0.18 2.21 8.06 -2.91 -0.02 2.18 16 37 H 0.15 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.15 0.44 8.07 -2.39 -0.02 0.42 16 39 H 0.21 0.76 8.06 -2.91 -0.02 0.74 16 40 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 41 H 0.20 2.02 8.06 -2.91 -0.02 1.99 16 42 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.09 2.90 8.12 -2.39 -0.02 2.88 16 Total: -1.00 -75.54 378.44 2.14 -73.40 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: -0.46 Total: 35.21 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 6.48 Total: -2.63 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -5.78 Total: -130.15 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.12 Total: -23.22 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -75.54 2.14 -73.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020184858.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.793 kcal (2) G-P(sol) polarization free energy of solvation -75.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds