Wall clock time and date at job start Sat Apr 11 2020 02:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50700 * 109.47053 * 2 1 4 4 N 1.30290 * 126.34707 * 270.15515 * 3 2 1 5 5 N 1.28533 * 110.05059 * 180.31346 * 4 3 2 6 6 C 1.31212 * 109.85840 * 359.72114 * 5 4 3 7 7 N 1.38588 * 126.47094 * 180.02562 * 6 5 4 8 8 C 1.46900 * 111.00051 * 292.90730 * 7 6 5 9 9 C 1.46895 * 110.99922 * 56.85793 * 7 6 5 10 10 H 1.08995 * 109.47536 * 300.00114 * 9 7 6 11 11 C 1.53001 * 109.47228 * 60.00148 * 9 7 6 12 12 C 1.50700 * 109.47252 * 179.97438 * 9 7 6 13 13 H 1.08005 * 120.00098 * 0.02562 * 12 9 7 14 14 C 1.37877 * 120.00457 * 180.02562 * 12 9 7 15 15 N 1.31513 * 120.00145 * 180.02562 * 14 12 9 16 16 Si 1.86802 * 119.99685 * 359.97438 * 14 12 9 17 17 H 1.48504 * 109.46616 * 90.00618 * 16 14 12 18 18 H 1.48499 * 109.47253 * 210.00139 * 16 14 12 19 19 H 1.48502 * 109.47337 * 330.00459 * 16 14 12 20 20 N 1.36445 * 107.05787 * 359.97438 * 6 5 4 21 21 C 1.46498 * 127.14006 * 180.02562 * 20 6 5 22 22 C 1.53000 * 109.47371 * 90.52021 * 21 20 6 23 23 S 1.81404 * 109.47257 * 180.02562 * 22 21 20 24 24 C 1.81400 * 101.92097 * 180.02562 * 23 22 21 25 25 O 1.42104 * 108.57561 * 294.48931 * 23 22 21 26 26 O 1.42096 * 108.57594 * 65.51232 * 23 22 21 27 27 H 1.09008 * 109.47498 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47280 * 299.99426 * 1 2 3 29 29 H 1.08997 * 109.47553 * 59.99825 * 1 2 3 30 30 H 1.09006 * 109.46876 * 240.00027 * 2 1 3 31 31 H 1.09005 * 109.47503 * 120.00518 * 2 1 3 32 32 H 1.08997 * 109.47508 * 66.34613 * 8 7 6 33 33 H 1.08998 * 109.47406 * 186.35107 * 8 7 6 34 34 H 1.09003 * 109.46809 * 306.34793 * 8 7 6 35 35 H 1.09005 * 109.47572 * 179.97438 * 11 9 7 36 36 H 1.08997 * 109.47046 * 300.00024 * 11 9 7 37 37 H 1.09002 * 109.47199 * 59.99776 * 11 9 7 38 38 H 0.97004 * 119.99666 * 179.97438 * 15 14 12 39 39 H 1.09005 * 109.47094 * 330.52066 * 21 20 6 40 40 H 1.09000 * 109.47441 * 210.52579 * 21 20 6 41 41 H 1.09006 * 109.46812 * 60.00496 * 22 21 20 42 42 H 1.09000 * 109.47293 * 300.00648 * 22 21 20 43 43 H 1.08999 * 109.46995 * 59.99984 * 24 23 22 44 44 H 1.08998 * 109.46824 * 180.02562 * 24 23 22 45 45 H 1.09006 * 109.46754 * 300.00123 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2869 2.1498 -1.0494 5 7 2.7053 3.3104 -0.6888 6 6 2.7345 3.3866 0.6208 7 7 3.1291 4.4811 1.3738 8 6 4.5653 4.7426 1.2100 9 6 2.3354 5.6690 1.0318 10 1 2.4699 5.9042 -0.0239 11 6 0.8565 5.3910 1.3080 12 6 2.7916 6.8360 1.8691 13 1 3.5914 6.7082 2.5835 14 6 2.1879 8.0670 1.7231 15 7 2.5863 9.0855 2.4535 16 14 0.8050 8.2883 0.4869 17 1 -0.4963 8.0053 1.1442 18 1 0.8111 9.6848 -0.0180 19 1 1.0007 7.3507 -0.6479 20 7 2.3019 2.1850 1.1014 21 6 2.1618 1.7927 2.5059 22 6 0.7518 2.1334 2.9924 23 16 0.5785 1.6483 4.7318 24 6 -1.1325 2.1344 5.0877 25 8 0.6742 0.2332 4.8188 26 8 1.4503 2.4521 5.5148 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.7633 5.0542 0.1844 33 1 4.8713 5.5330 1.8954 34 1 5.1272 3.8345 1.4286 35 1 0.2675 6.2726 1.0547 36 1 0.5262 4.5469 0.7027 37 1 0.7219 5.1558 2.3638 38 1 2.1618 9.9516 2.3505 39 1 2.8938 2.3309 3.1082 40 1 2.3302 0.7201 2.6021 41 1 0.0197 1.5952 2.3901 42 1 0.5834 3.2060 2.8961 43 1 -1.8088 1.5956 4.4240 44 1 -1.3707 1.8931 6.1236 45 1 -1.2459 3.2069 4.9293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460446708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:33:00 Heat of formation + Delta-G solvation = 32.005989 kcal Electronic energy + Delta-G solvation = -28213.201114 eV Core-core repulsion = 24395.920834 eV Total energy + Delta-G solvation = -3817.280280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.77384 -37.39544 -37.24454 -36.34656 -35.87599 -33.91784 -32.76093 -31.15726 -30.38656 -29.86494 -28.80524 -25.82161 -24.67189 -24.51893 -24.06036 -21.92816 -20.35835 -19.64040 -19.17274 -17.58048 -16.99594 -16.58083 -16.47358 -16.15243 -15.85596 -15.43783 -15.15126 -14.81607 -14.45770 -14.15220 -13.88978 -13.60841 -13.50333 -13.38522 -13.22594 -12.83198 -12.60079 -12.35028 -12.31053 -12.24417 -12.07737 -12.00427 -11.82752 -11.50952 -11.35019 -11.29529 -11.18755 -10.94573 -10.83398 -10.77715 -10.34480 -10.21375 -10.02273 -9.67398 -9.31034 -8.71065 -8.63765 -7.99841 -6.18935 -4.19926 -0.37931 1.91618 2.36445 2.43225 3.11082 3.16485 3.29846 3.31661 3.34327 3.70227 4.14361 4.22387 4.28686 4.29397 4.30873 4.48392 4.56941 4.70250 4.75905 5.01371 5.05952 5.12271 5.24911 5.33260 5.35690 5.49923 5.53229 5.58553 5.84735 5.94432 6.04366 6.11284 6.16009 6.17734 6.25308 6.38602 6.57379 6.70425 6.84255 7.02080 7.33966 7.57152 7.87931 8.45261 8.84989 9.02589 9.40721 10.92852 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010441 B = 0.005323 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.084606 B = 5258.904223 C = 6680.477661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.033 4.033 3 C 0.163 3.837 4 N -0.287 5.287 5 N -0.316 5.316 6 C 0.376 3.624 7 N -0.463 5.463 8 C 0.049 3.951 9 C 0.196 3.804 10 H 0.023 0.977 11 C -0.148 4.148 12 C -0.514 4.514 13 H 0.089 0.911 14 C 0.078 3.922 15 N -0.891 5.891 16 Si 0.877 3.123 17 H -0.279 1.279 18 H -0.293 1.293 19 H -0.264 1.264 20 N -0.465 5.465 21 C 0.134 3.866 22 C -0.646 4.646 23 S 2.427 3.573 24 C -0.653 4.653 25 O -0.939 6.939 26 O -0.922 6.922 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.037 0.963 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.024 0.976 37 H 0.057 0.943 38 H 0.266 0.734 39 H 0.119 0.881 40 H 0.104 0.896 41 H 0.136 0.864 42 H 0.151 0.849 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.222 -18.736 2.711 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.073 4.073 3 C -0.105 4.105 4 N -0.127 5.127 5 N -0.159 5.159 6 C 0.021 3.979 7 N -0.190 5.190 8 C -0.098 4.098 9 C 0.090 3.910 10 H 0.040 0.960 11 C -0.206 4.206 12 C -0.552 4.552 13 H 0.107 0.893 14 C -0.125 4.125 15 N -0.528 5.528 16 Si 0.707 3.293 17 H -0.206 1.206 18 H -0.220 1.220 19 H -0.189 1.189 20 N -0.159 5.159 21 C 0.009 3.991 22 C -0.773 4.773 23 S 2.607 3.393 24 C -0.803 4.803 25 O -0.936 6.936 26 O -0.919 6.919 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.116 0.884 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.138 0.862 40 H 0.122 0.878 41 H 0.155 0.845 42 H 0.169 0.831 43 H 0.147 0.853 44 H 0.151 0.849 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.544 -18.595 2.344 19.852 hybrid contribution -1.636 0.624 -0.513 1.825 sum -8.180 -17.970 1.831 19.829 Atomic orbital electron populations 1.21812 0.93952 1.02434 1.02554 1.19950 0.96403 0.86573 1.04400 1.24716 1.05535 0.97454 0.82768 1.73978 1.15507 0.99126 1.24102 1.74727 1.19951 1.12452 1.08780 1.22899 0.98969 0.87666 0.88406 1.59034 1.06404 1.02791 1.50743 1.22278 0.84383 1.01223 1.01938 1.19823 0.88636 0.85832 0.96730 0.95976 1.22249 0.98739 0.99043 1.00550 1.20862 1.20857 0.91155 1.22314 0.89338 1.24821 0.96670 0.95695 0.95302 1.69853 1.41989 1.01353 1.39618 0.87007 0.82670 0.76974 0.82630 1.20579 1.22020 1.18937 1.46259 1.50163 1.12362 1.07146 1.21277 0.94783 1.02393 0.80689 1.31007 1.05580 1.14986 1.25760 1.07712 0.78477 0.75749 0.77369 1.30236 1.24352 1.13398 1.12331 1.93602 1.86101 1.28339 1.85522 1.93671 1.61858 1.70732 1.65615 0.91213 0.92964 0.91642 0.88286 0.90016 0.94415 0.88359 0.93400 0.93049 0.95719 0.92396 0.92349 0.86239 0.87786 0.84538 0.83056 0.85308 0.84929 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.89 37.15 0.37 -0.85 16 2 C -0.03 -0.32 6.31 -27.89 -0.18 -0.50 16 3 C 0.16 2.39 7.32 -154.02 -1.13 1.26 16 4 N -0.29 -5.36 12.18 32.99 0.40 -4.96 16 5 N -0.32 -6.66 12.07 30.31 0.37 -6.29 16 6 C 0.38 7.21 5.05 -318.88 -1.61 5.60 16 7 N -0.46 -9.46 4.66 -176.09 -0.82 -10.28 16 8 C 0.05 0.94 9.14 60.06 0.55 1.48 16 9 C 0.20 4.57 1.57 -68.87 -0.11 4.47 16 10 H 0.02 0.58 7.11 -51.93 -0.37 0.21 16 11 C -0.15 -3.17 8.22 37.16 0.31 -2.86 16 12 C -0.51 -13.61 8.53 -34.44 -0.29 -13.90 16 13 H 0.09 2.50 6.64 -52.48 -0.35 2.15 16 14 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 15 N -0.89 -26.01 13.96 55.43 0.77 -25.24 16 16 Si 0.88 21.37 24.37 -169.99 -4.14 17.23 16 17 H -0.28 -6.52 6.87 56.52 0.39 -6.13 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.26 -6.45 6.53 56.52 0.37 -6.08 16 20 N -0.46 -7.05 2.81 -114.09 -0.32 -7.37 16 21 C 0.13 1.55 6.03 -4.04 -0.02 1.52 16 22 C -0.65 -6.08 6.13 37.16 0.23 -5.85 16 23 S 2.43 21.27 5.36 -107.50 -0.58 20.70 16 24 C -0.65 -3.67 10.62 101.05 1.07 -2.59 16 25 O -0.94 -10.15 18.10 -57.83 -1.05 -11.19 16 26 O -0.92 -12.32 18.10 -57.83 -1.05 -13.36 16 27 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.05 0.40 6.21 -51.93 -0.32 0.08 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.61 7.27 -51.93 -0.38 0.23 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.95 6.33 -51.93 -0.33 1.62 16 34 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 35 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 36 H 0.02 0.49 7.22 -51.93 -0.38 0.11 16 37 H 0.06 1.13 6.88 -51.93 -0.36 0.77 16 38 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.10 0.88 7.26 -51.93 -0.38 0.50 16 41 H 0.14 0.92 6.21 -51.92 -0.32 0.60 16 42 H 0.15 1.63 6.50 -51.92 -0.34 1.30 16 43 H 0.13 0.43 8.14 -51.92 -0.42 0.01 16 44 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.13 0.70 8.14 -51.92 -0.42 0.28 16 LS Contribution 368.81 15.07 5.56 5.56 Total: -1.00 -37.52 368.81 -8.44 -45.95 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.67 Total: -0.59 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -0.91 Total: -10.16 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.40 Total: -54.13 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -2.09 Total: -24.55 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.14 Total: 17.23 kcal Atomic # 16 Polarization: 21.27 SS G_CDS: -0.58 Total: 20.70 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.52 -8.44 -45.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460446708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.960 kcal (2) G-P(sol) polarization free energy of solvation -37.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds